Wall clock time and date at job start Tue Mar 31 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47518 * 275.39951 * 3 2 1 5 5 H 1.48506 * 109.46782 * 35.40336 * 3 2 1 6 6 H 1.48504 * 109.46919 * 155.39495 * 3 2 1 7 7 C 1.40044 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 341.62116 * 7 2 1 9 9 C 1.41531 * 120.00420 * 161.62215 * 7 2 1 10 10 C 1.41158 * 120.98229 * 330.84155 * 9 7 2 11 11 C 1.37716 * 119.08259 * 180.02562 * 10 9 7 12 12 N 1.31941 * 121.15991 * 359.97438 * 11 10 9 13 13 C 1.32803 * 122.20177 * 0.02562 * 12 11 10 14 14 C 1.48302 * 119.62076 * 180.26861 * 13 12 11 15 15 C 1.39438 * 120.05199 * 359.73433 * 14 13 12 16 16 C 1.38060 * 119.93084 * 180.02562 * 15 14 13 17 17 F 1.35095 * 119.98066 * 179.97438 * 16 15 14 18 18 C 1.39028 * 120.03389 * 359.97078 * 16 15 14 19 19 O 1.35920 * 119.93850 * 180.02562 * 18 16 15 20 20 C 1.38845 * 120.11631 * 0.05047 * 18 16 15 21 21 Cl 1.73599 * 119.96473 * 179.97438 * 20 18 16 22 22 C 1.38051 * 120.06762 * 359.67386 * 20 18 16 23 23 C 1.38950 * 120.76453 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.45892 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.41785 * 180.02562 * 11 10 9 27 27 H 1.08007 * 120.03442 * 359.97084 * 15 14 13 28 28 H 0.96700 * 114.00163 * 90.00152 * 19 18 16 29 29 H 1.08001 * 120.01700 * 180.32549 * 22 20 18 30 30 H 1.08007 * 120.61810 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3748 2.1124 -1.3938 5 1 1.5005 2.6170 0.8112 6 1 3.5913 1.4099 0.5830 7 6 2.0076 -1.2128 -0.0005 8 1 1.5089 -2.1244 0.2940 9 6 3.3687 -1.2439 -0.3870 10 6 3.8833 -0.3092 -1.3111 11 6 5.2139 -0.3757 -1.6600 12 7 6.0094 -1.2942 -1.1458 13 6 5.5769 -2.1967 -0.2729 14 6 6.5225 -3.2000 0.2736 15 6 7.8563 -3.1964 -0.1330 16 6 8.7344 -4.1318 0.3769 17 9 10.0267 -4.1296 -0.0168 18 6 8.2894 -5.0760 1.2953 19 8 9.1557 -5.9957 1.7965 20 6 6.9616 -5.0813 1.7010 21 17 6.4100 -6.2624 2.8475 22 6 6.0810 -4.1445 1.1983 23 6 4.2499 -2.2083 0.1390 24 1 -0.4850 0.8401 0.0004 25 1 3.2422 0.4471 -1.7394 26 1 5.6134 0.3370 -2.3663 27 1 8.2019 -2.4632 -0.8468 28 1 9.6068 -5.7123 2.6035 29 1 5.0495 -4.1461 1.5185 30 1 3.9007 -2.9431 0.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244500224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:02 Heat of formation + Delta-G solvation = -47.418203 kcal Electronic energy + Delta-G solvation = -19746.451331 eV Core-core repulsion = 16253.677260 eV Total energy + Delta-G solvation = -3492.774071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.90794 -39.82415 -38.65978 -36.82859 -36.47552 -34.20504 -31.74228 -31.42161 -30.46825 -28.20168 -26.14861 -23.66117 -23.12690 -21.45636 -20.87846 -18.77420 -18.13854 -16.92028 -16.75570 -16.21359 -15.93655 -15.17863 -15.07320 -14.58749 -14.41056 -14.37129 -13.89396 -13.34363 -13.19341 -13.09704 -12.69368 -12.40377 -12.02694 -11.74355 -11.31884 -11.25633 -11.06139 -10.95575 -10.76083 -10.69559 -9.99523 -9.56433 -9.07634 -8.75907 -8.48442 -8.35390 -7.64700 -7.22160 -4.88246 0.67806 1.01028 1.95524 2.26299 2.42954 2.94795 3.05686 3.13764 3.46597 3.76865 3.80503 4.26814 4.40519 4.59711 4.91417 5.18711 5.21116 5.24296 5.60332 5.75387 5.84359 5.94748 6.12635 6.25336 6.37008 6.56684 6.58778 6.71608 6.91245 7.00802 7.36579 7.45415 7.69313 8.04080 8.24524 8.47599 9.08625 9.78503 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.004306 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.293053 B = 6501.162636 C = 7529.909584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.434 4.434 8 H 0.097 0.903 9 C 0.106 3.894 10 C -0.281 4.281 11 C 0.123 3.877 12 N -0.564 5.564 13 C 0.152 3.848 14 C 0.021 3.979 15 C -0.108 4.108 16 C 0.082 3.918 17 F -0.130 7.130 18 C 0.068 3.932 19 O -0.478 6.478 20 C -0.036 4.036 21 Cl -0.050 7.050 22 C -0.098 4.098 23 C -0.228 4.228 24 H 0.290 0.710 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.157 0.843 28 H 0.389 0.611 29 H 0.151 0.849 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.816 -4.820 3.944 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.099 3.901 10 C -0.304 4.304 11 C -0.032 4.032 12 N -0.279 5.279 13 C 0.022 3.978 14 C 0.020 3.980 15 C -0.128 4.128 16 C 0.062 3.938 17 F -0.108 7.108 18 C 0.021 3.979 19 O -0.287 6.287 20 C -0.063 4.063 21 Cl -0.021 7.021 22 C -0.117 4.117 23 C -0.251 4.251 24 H 0.101 0.899 25 H 0.128 0.872 26 H 0.148 0.852 27 H 0.175 0.825 28 H 0.245 0.755 29 H 0.169 0.831 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.246 -5.202 3.313 12.827 hybrid contribution -0.478 0.953 0.643 1.245 sum 10.768 -4.250 3.957 12.234 Atomic orbital electron populations 1.69635 1.08236 1.30903 1.32527 1.26219 0.94769 1.02026 0.90563 0.86257 0.81224 0.79382 0.79189 1.19181 1.21365 1.16833 1.19550 0.92687 0.96446 1.37675 0.88541 1.17845 0.93125 0.90194 0.88985 1.21993 0.97158 1.05989 1.05227 1.21890 0.90329 0.94577 0.96359 1.67301 1.38625 1.07122 1.14867 1.18926 0.90516 0.93391 0.95015 1.18487 0.92077 0.93555 0.93897 1.21380 0.92364 0.98289 1.00744 1.17740 0.79591 0.97072 0.99360 1.91498 1.33886 1.95995 1.89438 1.18021 0.88699 0.92315 0.98838 1.84885 1.57774 1.39970 1.46101 1.20876 0.93169 0.94971 0.97332 1.98370 1.89264 1.56394 1.58112 1.21228 1.00612 0.93171 0.96726 1.21918 0.92756 1.04979 1.05414 0.89897 0.87188 0.85166 0.82515 0.75476 0.83105 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.42 13.92 55.55 0.77 -18.64 16 2 C 0.09 2.08 5.42 -17.34 -0.09 1.99 16 3 Si 0.91 19.14 24.54 -169.99 -4.17 14.97 16 4 H -0.27 -5.36 6.70 56.52 0.38 -4.98 16 5 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.25 -5.33 6.85 56.52 0.39 -4.94 16 7 C -0.43 -10.77 9.63 -37.65 -0.36 -11.14 16 8 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.11 2.50 5.13 -106.56 -0.55 1.95 16 10 C -0.28 -6.26 7.28 -38.67 -0.28 -6.54 16 11 C 0.12 2.53 11.15 -17.70 -0.20 2.33 16 12 N -0.56 -11.78 9.39 -9.95 -0.09 -11.88 16 13 C 0.15 3.09 6.73 -83.04 -0.56 2.54 16 14 C 0.02 0.36 5.88 -104.89 -0.62 -0.25 16 15 C -0.11 -1.71 9.54 -39.20 -0.37 -2.09 16 16 C 0.08 1.20 7.30 -39.35 -0.29 0.92 16 17 F -0.13 -1.88 17.10 2.25 0.04 -1.84 16 18 C 0.07 0.94 6.71 -39.06 -0.26 0.68 16 19 O -0.48 -5.71 12.81 -19.49 -0.25 -5.96 16 20 C -0.04 -0.50 6.32 -39.43 -0.25 -0.75 16 21 Cl -0.05 -0.63 28.49 -51.86 -1.48 -2.11 16 22 C -0.10 -1.48 9.18 -39.23 -0.36 -1.84 16 23 C -0.23 -4.87 9.25 -38.34 -0.35 -5.23 16 24 H 0.29 6.41 8.29 -40.82 -0.34 6.08 16 25 H 0.11 2.39 4.76 -52.48 -0.25 2.14 16 26 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.16 2.49 7.52 -52.48 -0.39 2.09 16 28 H 0.39 2.84 9.06 45.56 0.41 3.25 16 29 H 0.15 2.19 6.16 -52.49 -0.32 1.86 16 30 H 0.11 2.22 6.18 -52.48 -0.32 1.90 16 LS Contribution 284.54 15.07 4.29 4.29 Total: -1.00 -26.37 284.54 -6.33 -32.70 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -0.90 Total: 5.91 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -4.54 Total: -17.44 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.68 Total: -30.52 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.25 Total: -5.96 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.17 Total: 14.97 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.37 -6.33 -32.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244500224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.719 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds