Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47518 * 275.39951 * 3 2 1 5 5 H 1.48506 * 109.46782 * 35.40336 * 3 2 1 6 6 H 1.48504 * 109.46919 * 155.39495 * 3 2 1 7 7 C 1.40044 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 341.62116 * 7 2 1 9 9 C 1.41531 * 120.00420 * 161.62215 * 7 2 1 10 10 C 1.41158 * 120.98229 * 330.84155 * 9 7 2 11 11 C 1.37716 * 119.08259 * 180.02562 * 10 9 7 12 12 N 1.31941 * 121.15991 * 359.97438 * 11 10 9 13 13 C 1.32803 * 122.20177 * 0.02562 * 12 11 10 14 14 C 1.48302 * 119.62076 * 180.26861 * 13 12 11 15 15 C 1.39438 * 120.05199 * 359.73433 * 14 13 12 16 16 C 1.38060 * 119.93084 * 180.02562 * 15 14 13 17 17 F 1.35095 * 119.98066 * 179.97438 * 16 15 14 18 18 C 1.39028 * 120.03389 * 359.97078 * 16 15 14 19 19 O 1.35920 * 119.93850 * 180.02562 * 18 16 15 20 20 C 1.38845 * 120.11631 * 0.05047 * 18 16 15 21 21 Cl 1.73599 * 119.96473 * 179.97438 * 20 18 16 22 22 C 1.38051 * 120.06762 * 359.67386 * 20 18 16 23 23 C 1.38950 * 120.76453 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.45892 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.41785 * 180.02562 * 11 10 9 27 27 H 1.08007 * 120.03442 * 359.97084 * 15 14 13 28 28 H 0.96700 * 114.00163 * 90.00152 * 19 18 16 29 29 H 1.08001 * 120.01700 * 180.32549 * 22 20 18 30 30 H 1.08007 * 120.61810 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3748 2.1124 -1.3938 5 1 1.5005 2.6170 0.8112 6 1 3.5913 1.4099 0.5830 7 6 2.0076 -1.2128 -0.0005 8 1 1.5089 -2.1244 0.2940 9 6 3.3687 -1.2439 -0.3870 10 6 3.8833 -0.3092 -1.3111 11 6 5.2139 -0.3757 -1.6600 12 7 6.0094 -1.2942 -1.1458 13 6 5.5769 -2.1967 -0.2729 14 6 6.5225 -3.2000 0.2736 15 6 7.8563 -3.1964 -0.1330 16 6 8.7344 -4.1318 0.3769 17 9 10.0267 -4.1296 -0.0168 18 6 8.2894 -5.0760 1.2953 19 8 9.1557 -5.9957 1.7965 20 6 6.9616 -5.0813 1.7010 21 17 6.4100 -6.2624 2.8475 22 6 6.0810 -4.1445 1.1983 23 6 4.2499 -2.2083 0.1390 24 1 -0.4850 0.8401 0.0004 25 1 3.2422 0.4471 -1.7394 26 1 5.6134 0.3370 -2.3663 27 1 8.2019 -2.4632 -0.8468 28 1 9.6068 -5.7123 2.6035 29 1 5.0495 -4.1461 1.5185 30 1 3.9007 -2.9431 0.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244500224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = -63.325196 kcal Electronic energy + Delta-G solvation = -19747.141110 eV Core-core repulsion = 16253.677260 eV Total energy + Delta-G solvation = -3493.463850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.05317 -41.13028 -40.11179 -37.95875 -37.57391 -35.95312 -33.41980 -32.89565 -31.69397 -29.59105 -27.90594 -25.05851 -24.42172 -22.92925 -22.44275 -19.90586 -19.65663 -18.29204 -18.03221 -17.69689 -17.19973 -16.58614 -16.44043 -16.06212 -15.89296 -15.66417 -15.15799 -14.89348 -14.73583 -14.55918 -13.98667 -13.60040 -13.48197 -13.26987 -12.81208 -12.73842 -12.62143 -12.32187 -12.17716 -11.80416 -11.71207 -11.27344 -10.41256 -10.21954 -10.04631 -9.91732 -9.12320 -9.00953 -6.73749 -0.58729 -0.16853 0.66698 0.77367 0.86857 1.26396 1.40396 1.47117 2.06410 2.17501 2.66775 2.70610 3.15600 3.21786 3.49193 3.73705 3.90487 4.01597 4.24961 4.45882 4.55250 4.57473 4.63667 4.68084 4.81293 5.03477 5.13792 5.23043 5.39875 5.44643 5.68810 5.99071 6.19936 6.47347 6.54210 6.64793 7.42015 8.05478 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.004306 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.293053 B = 6501.162636 C = 7529.909584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.056 3.944 3 Si 0.964 3.036 4 H -0.250 1.250 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.469 4.469 8 H 0.068 0.932 9 C 0.094 3.906 10 C -0.295 4.295 11 C 0.123 3.877 12 N -0.564 5.564 13 C 0.158 3.842 14 C -0.005 4.005 15 C -0.102 4.102 16 C 0.080 3.920 17 F -0.128 7.128 18 C 0.092 3.908 19 O -0.481 6.481 20 C -0.039 4.039 21 Cl -0.034 7.034 22 C -0.090 4.090 23 C -0.245 4.245 24 H 0.299 0.701 25 H 0.114 0.886 26 H 0.167 0.833 27 H 0.155 0.845 28 H 0.414 0.586 29 H 0.153 0.847 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -4.966 4.142 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.163 4.163 3 Si 0.787 3.213 4 H -0.175 1.175 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.500 4.500 8 H 0.086 0.914 9 C 0.086 3.914 10 C -0.317 4.317 11 C -0.032 4.032 12 N -0.278 5.278 13 C 0.026 3.974 14 C -0.006 4.006 15 C -0.121 4.121 16 C 0.059 3.941 17 F -0.106 7.106 18 C 0.045 3.955 19 O -0.294 6.294 20 C -0.067 4.067 21 Cl -0.005 7.005 22 C -0.109 4.109 23 C -0.267 4.267 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.184 0.816 27 H 0.173 0.827 28 H 0.274 0.726 29 H 0.171 0.829 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.605 -5.355 3.527 15.040 hybrid contribution -0.975 0.774 0.636 1.398 sum 12.631 -4.580 4.163 14.066 Atomic orbital electron populations 1.69653 1.09237 1.32119 1.34300 1.26829 0.95294 1.04236 0.89934 0.85501 0.79373 0.76431 0.80008 1.17474 1.20108 1.18195 1.19520 0.93822 0.96144 1.40465 0.91418 1.18040 0.92865 0.91218 0.89235 1.22141 0.98144 1.06046 1.05352 1.22451 0.89690 0.94766 0.96274 1.67441 1.38658 1.07075 1.14647 1.19324 0.90695 0.93357 0.94001 1.18301 0.92192 0.94244 0.95873 1.21303 0.91955 0.98429 1.00426 1.17654 0.79518 0.97192 0.99691 1.91507 1.33648 1.95993 1.89481 1.17992 0.88809 0.91179 0.97549 1.84826 1.57535 1.39504 1.47532 1.20845 0.93109 0.95085 0.97637 1.98382 1.89164 1.55596 1.57375 1.21234 1.00937 0.92825 0.95939 1.22102 0.93281 1.05195 1.06134 0.88981 0.86837 0.81565 0.82742 0.72588 0.82930 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.94 13.92 21.84 0.30 -41.63 16 2 C 0.06 2.74 5.42 85.29 0.46 3.20 16 3 Si 0.96 39.27 24.54 68.60 1.68 40.95 16 4 H -0.25 -9.44 6.70 99.48 0.67 -8.78 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.26 -10.94 6.85 99.48 0.68 -10.26 16 7 C -0.47 -24.32 9.63 23.52 0.23 -24.09 16 8 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 9 C 0.09 4.50 5.13 -21.12 -0.11 4.39 16 10 C -0.29 -12.93 7.28 22.86 0.17 -12.76 16 11 C 0.12 4.83 11.15 84.55 0.94 5.77 16 12 N -0.56 -22.66 9.39 -185.39 -1.74 -24.40 16 13 C 0.16 6.28 6.73 41.85 0.28 6.56 16 14 C 0.00 -0.15 5.88 -20.04 -0.12 -0.27 16 15 C -0.10 -3.02 9.54 22.52 0.21 -2.81 16 16 C 0.08 2.12 7.30 22.42 0.16 2.28 16 17 F -0.13 -3.37 17.10 44.97 0.77 -2.60 16 18 C 0.09 2.26 6.71 22.60 0.15 2.41 16 19 O -0.48 -9.75 12.81 -92.65 -1.19 -10.94 16 20 C -0.04 -1.00 6.32 22.37 0.14 -0.86 16 21 Cl -0.03 -0.77 28.49 -2.72 -0.08 -0.85 16 22 C -0.09 -2.59 9.18 22.50 0.21 -2.39 16 23 C -0.24 -10.56 9.25 23.07 0.21 -10.34 16 24 H 0.30 13.50 8.29 -92.71 -0.77 12.73 16 25 H 0.11 4.83 4.76 -2.91 -0.01 4.82 16 26 H 0.17 5.23 8.06 -2.91 -0.02 5.21 16 27 H 0.15 4.63 7.52 -2.91 -0.02 4.61 16 28 H 0.41 4.39 9.06 -74.06 -0.67 3.72 16 29 H 0.15 4.30 6.16 -2.91 -0.02 4.28 16 30 H 0.13 4.95 6.18 -2.91 -0.02 4.93 16 Total: -1.00 -56.41 284.54 3.19 -53.22 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.50 Total: 15.16 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 2.95 Total: -28.90 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -1.44 Total: -66.03 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.19 Total: -10.94 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.77 Total: -2.60 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.68 Total: 40.95 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -56.41 3.19 -53.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244500224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.105 kcal (2) G-P(sol) polarization free energy of solvation -56.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds