Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48501 * 109.47128 * 275.40975 * 3 2 1 5 5 H 1.48501 * 109.46962 * 35.40582 * 3 2 1 6 6 H 1.48497 * 109.47351 * 155.40609 * 3 2 1 7 7 C 1.39994 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 341.80362 * 7 2 1 9 9 C 1.41023 * 119.99971 * 161.81072 * 7 2 1 10 10 C 1.41328 * 120.54773 * 150.33188 * 9 7 2 11 11 C 1.36555 * 118.41830 * 179.97438 * 10 9 7 12 12 C 1.39969 * 119.46668 * 359.97438 * 11 10 9 13 13 C 1.47840 * 119.45699 * 179.97438 * 12 11 10 14 14 C 1.39738 * 120.07301 * 359.97438 * 13 12 11 15 15 C 1.37932 * 119.90328 * 180.02562 * 14 13 12 16 16 F 1.35102 * 119.96818 * 180.02562 * 15 14 13 17 17 C 1.39157 * 120.06141 * 359.97438 * 15 14 13 18 18 O 1.35858 * 119.92021 * 180.02562 * 17 15 14 19 19 C 1.38974 * 120.15438 * 359.75554 * 17 15 14 20 20 Cl 1.73595 * 119.95550 * 180.27470 * 19 17 15 21 21 C 1.37915 * 120.09162 * 0.49755 * 19 17 15 22 22 N 1.33067 * 121.08976 * 0.25771 * 12 11 10 23 23 C 1.31258 * 121.71556 * 359.47297 * 22 12 11 24 24 H 0.96997 * 120.00320 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.79398 * 359.94559 * 10 9 7 26 26 H 1.08002 * 120.26836 * 179.97438 * 11 10 9 27 27 H 1.07997 * 120.04830 * 0.04132 * 14 13 12 28 28 H 0.96692 * 114.00223 * 90.00602 * 18 17 15 29 29 H 1.08003 * 120.03044 * 179.77619 * 21 19 17 30 30 H 1.07998 * 119.79877 * 180.26773 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3754 2.1123 -1.3938 5 1 1.5014 2.6169 0.8112 6 1 3.5921 1.4098 0.5827 7 6 2.0081 -1.2124 0.0005 8 1 1.5085 -2.1242 0.2930 9 6 3.3654 -1.2431 -0.3807 10 6 4.2426 -2.2087 0.1630 11 6 5.5482 -2.1991 -0.2371 12 6 5.9769 -1.2433 -1.1654 13 6 7.3905 -1.2328 -1.5979 14 6 8.2879 -2.1710 -1.0811 15 6 9.6062 -2.1577 -1.4867 16 9 10.4749 -3.0645 -0.9883 17 6 10.0421 -1.2117 -2.4096 18 8 11.3410 -1.2015 -2.8075 19 6 9.1504 -0.2811 -2.9294 20 17 9.6981 0.8921 -4.0858 21 6 7.8321 -0.2853 -2.5244 22 7 5.1343 -0.3404 -1.6608 23 6 3.8694 -0.3121 -1.3114 24 1 -0.4850 0.8400 -0.0004 25 1 3.8889 -2.9366 0.8781 26 1 6.2444 -2.9233 0.1596 27 1 7.9498 -2.9056 -0.3654 28 1 11.5193 -1.7513 -3.5827 29 1 7.1408 0.4407 -2.9263 30 1 3.2118 0.4318 -1.7362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244501153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = -64.133646 kcal Electronic energy + Delta-G solvation = -19712.833681 eV Core-core repulsion = 16219.334775 eV Total energy + Delta-G solvation = -3493.498907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -50.01162 -41.06486 -40.11395 -37.90430 -37.54036 -35.91655 -33.45004 -33.00112 -31.49765 -30.46639 -27.14846 -24.86500 -24.24438 -23.34051 -22.26818 -19.82315 -19.68382 -18.77931 -18.02308 -17.59868 -17.15070 -16.64761 -16.34305 -16.23907 -15.80084 -15.41676 -15.01531 -14.97949 -14.70982 -14.31910 -13.96684 -13.72180 -13.46080 -13.16901 -13.06026 -12.83783 -12.46172 -12.32701 -12.17318 -11.90996 -11.71965 -11.34142 -10.53166 -10.27874 -10.09483 -9.86346 -9.14663 -9.10667 -6.63382 -0.48718 -0.08377 0.64137 0.77582 0.92341 1.24604 1.36404 1.41945 2.00843 2.17114 2.64484 2.78926 3.15306 3.44726 3.48031 3.80973 3.97037 4.08236 4.23634 4.40377 4.44610 4.61186 4.70599 4.73031 4.89437 4.98552 5.18493 5.26821 5.44081 5.58238 5.64057 5.93570 6.05826 6.40839 6.53787 6.59629 7.41940 7.94265 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.004172 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.667969 B = 6710.367919 C = 7670.419734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.057 3.943 3 Si 0.956 3.044 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.442 4.442 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.186 4.186 11 C -0.096 4.096 12 C -0.009 4.009 13 C 0.030 3.970 14 C -0.137 4.137 15 C 0.091 3.909 16 F -0.128 7.128 17 C 0.068 3.932 18 O -0.482 6.482 19 C -0.034 4.034 20 Cl -0.043 7.043 21 C -0.101 4.101 22 N -0.448 5.448 23 C -0.043 4.043 24 H 0.303 0.697 25 H 0.131 0.869 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.410 0.590 29 H 0.141 0.859 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.125 -1.496 -4.033 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.163 4.163 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.470 4.470 8 H 0.096 0.904 9 C 0.029 3.971 10 C -0.211 4.211 11 C -0.116 4.116 12 C -0.144 4.144 13 C 0.029 3.971 14 C -0.157 4.157 15 C 0.071 3.929 16 F -0.106 7.106 17 C 0.021 3.979 18 O -0.295 6.295 19 C -0.062 4.062 20 Cl -0.014 7.014 21 C -0.121 4.121 22 N -0.155 5.155 23 C -0.206 4.206 24 H 0.115 0.885 25 H 0.149 0.851 26 H 0.169 0.831 27 H 0.182 0.818 28 H 0.269 0.731 29 H 0.159 0.841 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.293 -0.369 -4.226 15.871 hybrid contribution -0.584 -0.319 0.205 0.696 sum 14.710 -0.688 -4.022 15.265 Atomic orbital electron populations 1.69655 1.08992 1.32483 1.32433 1.26777 0.95291 1.03919 0.90293 0.85622 0.79291 0.77122 0.80016 1.18003 1.19209 1.18770 1.19571 0.93641 0.96257 1.37573 0.90429 1.18857 0.93952 0.93301 0.90999 1.21363 0.93265 1.03006 1.03430 1.21656 0.96352 0.97686 0.95886 1.19111 0.92407 0.98798 1.04101 1.18225 0.90963 0.93665 0.94291 1.21282 0.90480 1.01204 1.02700 1.17546 0.87497 0.89595 0.98257 1.91508 1.68648 1.64590 1.85882 1.17990 0.85137 0.95908 0.98907 1.84822 1.20020 1.72277 1.52378 1.20954 0.93290 0.95118 0.96814 1.98365 1.89852 1.56148 1.57020 1.21148 0.93541 0.99779 0.97640 1.66921 1.03881 1.21366 1.23346 1.22466 0.92011 1.04108 1.02044 0.88548 0.85092 0.83100 0.81771 0.73092 0.84131 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.63 13.93 21.84 0.30 -39.33 16 2 C 0.06 2.76 5.41 85.27 0.46 3.22 16 3 Si 0.96 39.53 24.52 68.60 1.68 41.21 16 4 H -0.25 -10.18 6.71 99.48 0.67 -9.51 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -11.62 6.86 99.48 0.68 -10.93 16 7 C -0.44 -22.09 9.58 23.38 0.22 -21.87 16 8 H 0.08 4.07 8.06 -2.91 -0.02 4.04 16 9 C 0.03 1.59 5.12 -21.17 -0.11 1.48 16 10 C -0.19 -7.57 9.87 22.64 0.22 -7.35 16 11 C -0.10 -3.47 9.38 22.30 0.21 -3.26 16 12 C -0.01 -0.37 6.74 41.92 0.28 -0.08 16 13 C 0.03 0.97 5.88 -20.03 -0.12 0.85 16 14 C -0.14 -3.67 9.38 22.56 0.21 -3.46 16 15 C 0.09 2.34 7.30 22.42 0.16 2.50 16 16 F -0.13 -3.20 17.10 44.97 0.77 -2.43 16 17 C 0.07 1.72 6.71 22.67 0.15 1.87 16 18 O -0.48 -10.27 12.80 -91.96 -1.18 -11.45 16 19 C -0.03 -0.93 6.32 22.37 0.14 -0.79 16 20 Cl -0.04 -1.04 28.49 -2.72 -0.08 -1.12 16 21 C -0.10 -3.16 9.34 22.54 0.21 -2.95 16 22 N -0.45 -19.72 9.38 -182.73 -1.71 -21.43 16 23 C -0.04 -1.98 8.37 85.45 0.71 -1.26 16 24 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 25 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 26 H 0.15 4.11 6.14 -2.91 -0.02 4.09 16 27 H 0.16 3.69 6.14 -2.91 -0.02 3.67 16 28 H 0.41 4.83 9.06 -74.06 -0.67 4.16 16 29 H 0.14 4.67 7.51 -2.91 -0.02 4.65 16 30 H 0.13 6.02 4.73 -2.91 -0.01 6.00 16 Total: -1.00 -54.81 284.30 3.05 -51.76 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.50 Total: 13.88 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.77 Total: -31.10 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.41 Total: -60.76 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.18 Total: -11.45 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.77 Total: -2.43 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.68 Total: 41.21 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -54.81 3.05 -51.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244501153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.378 kcal (2) G-P(sol) polarization free energy of solvation -54.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds