Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86809 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47261 * 240.00372 * 3 2 1 5 5 H 1.48504 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47039 * 120.00427 * 3 2 1 7 7 C 1.39931 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00560 * 197.50622 * 7 2 1 9 9 C 1.41438 * 119.99712 * 17.50935 * 7 2 1 10 10 C 1.40810 * 120.60525 * 203.42469 * 9 7 2 11 11 N 1.31497 * 120.67079 * 180.02562 * 10 9 7 12 12 C 1.31936 * 122.11966 * 359.97438 * 11 10 9 13 13 C 1.39687 * 121.15250 * 359.97438 * 12 11 10 14 14 C 1.48380 * 120.41232 * 179.97438 * 13 12 11 15 15 C 1.39397 * 120.05275 * 179.74792 * 14 13 12 16 16 C 1.38079 * 119.93028 * 179.72678 * 15 14 13 17 17 F 1.35103 * 119.98388 * 180.29884 * 16 15 14 18 18 C 1.39000 * 120.04105 * 0.57153 * 16 15 14 19 19 O 1.35950 * 119.95178 * 179.72066 * 18 16 15 20 20 C 1.38823 * 120.10397 * 359.70458 * 18 16 15 21 21 Cl 1.73599 * 119.96761 * 180.02562 * 20 18 16 22 22 C 1.38081 * 120.06940 * 359.97438 * 20 18 16 23 23 C 1.39190 * 119.17336 * 0.02562 * 13 12 11 24 24 H 0.96998 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.66528 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.42569 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.03081 * 0.02562 * 15 14 13 28 28 H 0.96697 * 113.99987 * 269.97780 * 19 18 16 29 29 H 1.07997 * 120.02064 * 180.02562 * 22 20 18 30 30 H 1.08006 * 120.94917 * 179.72574 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0505 -1.2336 0.2808 9 6 1.3500 -2.4082 -0.3696 10 6 1.8318 -3.6562 0.0698 11 7 1.2213 -4.7693 -0.2730 12 6 0.1432 -4.7726 -1.0336 13 6 -0.4055 -3.5814 -1.5144 14 6 -1.6181 -3.6042 -2.3692 15 6 -2.1625 -2.4107 -2.8406 16 6 -3.2877 -2.4352 -3.6405 17 9 -3.8127 -1.2794 -4.1030 18 6 -3.8841 -3.6479 -3.9656 19 8 -4.9953 -3.6696 -4.7486 20 6 -3.3467 -4.8372 -3.4922 21 17 -4.0940 -6.3498 -3.9010 22 6 -2.2177 -4.8182 -2.6975 23 6 0.2001 -2.3728 -1.1826 24 1 -0.4850 0.8400 0.0004 25 1 2.7116 -3.6997 0.6947 26 1 -0.3232 -5.7127 -1.2889 27 1 -1.7017 -1.4681 -2.5844 28 1 -5.8253 -3.6191 -4.2550 29 1 -1.8000 -5.7439 -2.3300 30 1 -0.1974 -1.4352 -1.5423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244501691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -50.913860 kcal Electronic energy + Delta-G solvation = -19942.519766 eV Core-core repulsion = 16449.594112 eV Total energy + Delta-G solvation = -3492.925654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.81589 -39.71713 -38.44972 -36.75584 -36.43798 -34.27498 -31.89359 -30.78000 -30.24024 -27.96376 -25.85783 -23.48769 -23.05447 -21.40774 -20.69926 -18.71409 -17.82318 -16.85884 -16.56928 -16.27569 -15.77528 -15.35808 -14.97780 -14.72612 -14.31369 -14.04722 -13.73030 -13.14603 -12.99338 -12.58330 -12.55196 -12.13849 -11.72827 -11.62693 -11.46596 -11.28698 -11.23057 -10.99688 -10.72933 -10.58185 -10.08443 -9.53926 -9.24914 -8.68451 -8.32536 -8.08726 -7.50090 -7.03218 -4.68013 0.80748 1.09100 2.00843 2.41986 2.69609 2.93430 2.94889 3.06112 3.62708 3.72554 3.90863 4.36222 4.43544 4.86519 4.98862 5.28709 5.42689 5.45776 5.73589 5.83675 5.99000 6.05728 6.25901 6.32232 6.54083 6.70315 6.82470 6.89990 6.99226 7.41821 7.45202 7.62905 7.68453 8.20083 8.46520 8.49152 9.40920 9.87237 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.004797 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.875812 B = 5835.833113 C = 7223.815127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.060 3.940 10 C -0.010 4.010 11 N -0.467 5.467 12 C -0.020 4.020 13 C -0.102 4.102 14 C 0.033 3.967 15 C -0.133 4.133 16 C 0.093 3.907 17 F -0.130 7.130 18 C 0.057 3.943 19 O -0.478 6.478 20 C -0.031 4.031 21 Cl -0.055 7.055 22 C -0.110 4.110 23 C -0.110 4.110 24 H 0.287 0.713 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.153 0.847 28 H 0.387 0.613 29 H 0.147 0.853 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -2.809 -5.067 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.056 3.944 10 C -0.171 4.171 11 N -0.174 5.174 12 C -0.177 4.177 13 C -0.104 4.104 14 C 0.031 3.969 15 C -0.152 4.152 16 C 0.073 3.927 17 F -0.108 7.108 18 C 0.010 3.990 19 O -0.287 6.287 20 C -0.058 4.058 21 Cl -0.026 7.026 22 C -0.129 4.129 23 C -0.135 4.135 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.171 0.829 28 H 0.243 0.757 29 H 0.165 0.835 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.053 -3.568 -5.276 9.503 hybrid contribution -0.642 1.776 0.004 1.888 sum -7.695 -1.792 -5.273 9.498 Atomic orbital electron populations 1.69747 1.07752 1.30116 1.33708 1.25994 0.94832 1.01790 0.91841 0.86251 0.80160 0.79518 0.80312 1.18540 1.20088 1.18669 1.19573 0.98291 0.90728 1.38896 0.89577 1.18465 0.92056 0.93860 0.90063 1.22619 1.02327 0.87938 1.04216 1.66974 1.07707 1.31945 1.10752 1.21778 0.96833 0.95173 1.03953 1.19281 0.94826 0.95991 1.00293 1.18709 0.93761 0.90774 0.93624 1.21438 0.95023 1.00956 0.97807 1.17700 0.95710 0.80738 0.98596 1.91501 1.85874 1.46454 1.86983 1.17944 0.92620 0.89788 0.98663 1.84896 1.14443 1.95803 1.33588 1.20915 0.97453 0.86462 1.00957 1.98359 1.81744 1.29799 1.92714 1.21149 0.94182 0.99494 0.98096 1.21865 0.97636 0.95935 0.98097 0.90210 0.85279 0.85815 0.82946 0.75707 0.83543 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.35 10.91 55.55 0.61 -17.75 16 2 C 0.07 1.69 5.18 -17.35 -0.09 1.60 16 3 Si 0.91 17.01 29.59 -169.99 -5.03 11.98 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.45 -10.66 9.08 -37.73 -0.34 -11.00 16 8 H 0.09 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.06 1.46 5.59 -106.71 -0.60 0.87 16 10 C -0.01 -0.23 10.96 -16.72 -0.18 -0.41 16 11 N -0.47 -10.80 10.32 -12.28 -0.13 -10.93 16 12 C -0.02 -0.42 10.60 -16.97 -0.18 -0.60 16 13 C -0.10 -2.15 5.88 -104.83 -0.62 -2.77 16 14 C 0.03 0.59 5.88 -104.89 -0.62 -0.03 16 15 C -0.13 -2.31 9.40 -39.21 -0.37 -2.68 16 16 C 0.09 1.49 7.30 -39.36 -0.29 1.20 16 17 F -0.13 -2.09 17.10 2.25 0.04 -2.05 16 18 C 0.06 0.84 6.71 -39.08 -0.26 0.57 16 19 O -0.48 -6.17 12.81 -19.58 -0.25 -6.42 16 20 C -0.03 -0.44 6.33 -39.42 -0.25 -0.69 16 21 Cl -0.06 -0.70 28.49 -51.86 -1.48 -2.18 16 22 C -0.11 -1.73 9.21 -39.24 -0.36 -2.09 16 23 C -0.11 -2.57 8.16 -38.23 -0.31 -2.89 16 24 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 25 H 0.13 2.79 8.06 -52.48 -0.42 2.37 16 26 H 0.12 2.27 6.19 -52.48 -0.33 1.95 16 27 H 0.15 2.74 6.25 -52.49 -0.33 2.41 16 28 H 0.39 3.23 9.06 45.56 0.41 3.64 16 29 H 0.15 2.10 6.21 -52.49 -0.33 1.77 16 30 H 0.13 3.12 4.43 -52.48 -0.23 2.89 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -26.01 287.23 -7.15 -33.16 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -0.77 Total: 8.78 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -4.47 Total: -18.92 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.48 Total: -28.68 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.25 Total: -6.42 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.01 -7.15 -33.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244501691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.758 kcal (2) G-P(sol) polarization free energy of solvation -26.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds