Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86809 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47261 * 240.00372 * 3 2 1 5 5 H 1.48504 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47039 * 120.00427 * 3 2 1 7 7 C 1.39931 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00560 * 197.50622 * 7 2 1 9 9 C 1.41438 * 119.99712 * 17.50935 * 7 2 1 10 10 C 1.40810 * 120.60525 * 203.42469 * 9 7 2 11 11 N 1.31497 * 120.67079 * 180.02562 * 10 9 7 12 12 C 1.31936 * 122.11966 * 359.97438 * 11 10 9 13 13 C 1.39687 * 121.15250 * 359.97438 * 12 11 10 14 14 C 1.48380 * 120.41232 * 179.97438 * 13 12 11 15 15 C 1.39397 * 120.05275 * 179.74792 * 14 13 12 16 16 C 1.38079 * 119.93028 * 179.72678 * 15 14 13 17 17 F 1.35103 * 119.98388 * 180.29884 * 16 15 14 18 18 C 1.39000 * 120.04105 * 0.57153 * 16 15 14 19 19 O 1.35950 * 119.95178 * 179.72066 * 18 16 15 20 20 C 1.38823 * 120.10397 * 359.70458 * 18 16 15 21 21 Cl 1.73599 * 119.96761 * 180.02562 * 20 18 16 22 22 C 1.38081 * 120.06940 * 359.97438 * 20 18 16 23 23 C 1.39190 * 119.17336 * 0.02562 * 13 12 11 24 24 H 0.96998 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.66528 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.42569 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.03081 * 0.02562 * 15 14 13 28 28 H 0.96697 * 113.99987 * 269.97780 * 19 18 16 29 29 H 1.07997 * 120.02064 * 180.02562 * 22 20 18 30 30 H 1.08006 * 120.94917 * 179.72574 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0505 -1.2336 0.2808 9 6 1.3500 -2.4082 -0.3696 10 6 1.8318 -3.6562 0.0698 11 7 1.2213 -4.7693 -0.2730 12 6 0.1432 -4.7726 -1.0336 13 6 -0.4055 -3.5814 -1.5144 14 6 -1.6181 -3.6042 -2.3692 15 6 -2.1625 -2.4107 -2.8406 16 6 -3.2877 -2.4352 -3.6405 17 9 -3.8127 -1.2794 -4.1030 18 6 -3.8841 -3.6479 -3.9656 19 8 -4.9953 -3.6696 -4.7486 20 6 -3.3467 -4.8372 -3.4922 21 17 -4.0940 -6.3498 -3.9010 22 6 -2.2177 -4.8182 -2.6975 23 6 0.2001 -2.3728 -1.1826 24 1 -0.4850 0.8400 0.0004 25 1 2.7116 -3.6997 0.6947 26 1 -0.3232 -5.7127 -1.2889 27 1 -1.7017 -1.4681 -2.5844 28 1 -5.8253 -3.6191 -4.2550 29 1 -1.8000 -5.7439 -2.3300 30 1 -0.1974 -1.4352 -1.5423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244501691.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -65.364795 kcal Electronic energy + Delta-G solvation = -19943.146405 eV Core-core repulsion = 16449.594112 eV Total energy + Delta-G solvation = -3493.552293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.08606 -41.06820 -39.98776 -37.96924 -37.57520 -36.00331 -33.40020 -32.39710 -31.65603 -29.40259 -27.59456 -24.94553 -24.45946 -22.99135 -22.24142 -19.87961 -19.41048 -18.22891 -17.96972 -17.76939 -17.15535 -16.93039 -16.32471 -16.07193 -15.83798 -15.43859 -15.07319 -14.59856 -14.50343 -14.00715 -13.94492 -13.62754 -13.21666 -13.16871 -13.13670 -12.69929 -12.55717 -12.31445 -12.14903 -11.77706 -11.73288 -11.21976 -10.67721 -10.08553 -9.92428 -9.83137 -9.04921 -8.72319 -6.48519 -0.53205 -0.17369 0.80530 0.86708 1.01930 1.39927 1.49917 1.53947 2.16747 2.25772 2.71158 2.74428 3.15379 3.47962 3.68391 3.72137 3.96196 4.12527 4.19158 4.47315 4.60523 4.65884 4.71895 4.78642 4.93835 5.13753 5.20444 5.29547 5.44836 5.73025 5.86039 5.95583 6.43012 6.53902 6.70574 6.72408 7.64193 8.19435 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.004797 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.875812 B = 5835.833113 C = 7223.815127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.477 4.477 8 H 0.088 0.912 9 C 0.036 3.964 10 C -0.032 4.032 11 N -0.478 5.478 12 C -0.025 4.025 13 C -0.094 4.094 14 C 0.008 3.992 15 C -0.135 4.135 16 C 0.084 3.916 17 F -0.131 7.131 18 C 0.081 3.919 19 O -0.480 6.480 20 C -0.032 4.032 21 Cl -0.031 7.031 22 C -0.096 4.096 23 C -0.134 4.134 24 H 0.293 0.707 25 H 0.137 0.863 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.412 0.588 29 H 0.162 0.838 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 -3.341 -6.031 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.506 4.506 8 H 0.106 0.894 9 C 0.032 3.968 10 C -0.192 4.192 11 N -0.185 5.185 12 C -0.183 4.183 13 C -0.096 4.096 14 C 0.007 3.993 15 C -0.154 4.154 16 C 0.064 3.936 17 F -0.110 7.110 18 C 0.034 3.966 19 O -0.293 6.293 20 C -0.059 4.059 21 Cl -0.002 7.002 22 C -0.114 4.114 23 C -0.159 4.159 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.174 0.826 27 H 0.155 0.845 28 H 0.272 0.728 29 H 0.180 0.820 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.431 -4.116 -6.230 11.262 hybrid contribution -0.432 1.808 0.191 1.869 sum -8.863 -2.308 -6.040 10.971 Atomic orbital electron populations 1.69793 1.08998 1.31277 1.33941 1.26771 0.95497 1.04570 0.90888 0.85218 0.78837 0.75359 0.80263 1.18432 1.19262 1.18135 1.19839 0.98695 0.91660 1.40417 0.89364 1.18781 0.92847 0.94523 0.90667 1.22769 1.03160 0.88043 1.05227 1.66998 1.08444 1.31763 1.11303 1.22329 0.96316 0.96547 1.03092 1.19495 0.95389 0.95153 0.99601 1.18508 0.93683 0.92052 0.95068 1.21316 0.95561 1.00299 0.98244 1.17673 0.95654 0.81295 0.98979 1.91495 1.85802 1.46696 1.87005 1.17911 0.92703 0.89201 0.96828 1.84836 1.15048 1.95610 1.33823 1.20886 0.97114 0.87446 1.00465 1.98375 1.81199 1.28150 1.92454 1.21226 0.93914 0.98968 0.97302 1.21910 0.98234 0.96700 0.99103 0.89556 0.84522 0.82615 0.84492 0.72833 0.82038 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.88 10.91 21.82 0.24 -38.64 16 2 C 0.04 1.82 5.18 85.25 0.44 2.27 16 3 Si 0.98 35.04 29.59 68.60 2.03 37.07 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.48 -23.61 9.08 23.47 0.21 -23.40 16 8 H 0.09 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.04 1.83 5.59 -21.22 -0.12 1.71 16 10 C -0.03 -1.53 10.96 85.37 0.94 -0.60 16 11 N -0.48 -22.25 10.32 -192.75 -1.99 -24.24 16 12 C -0.02 -1.05 10.60 85.03 0.90 -0.15 16 13 C -0.09 -4.02 5.88 -20.00 -0.12 -4.14 16 14 C 0.01 0.29 5.88 -20.04 -0.12 0.17 16 15 C -0.14 -4.69 9.40 22.51 0.21 -4.48 16 16 C 0.08 2.59 7.30 22.41 0.16 2.75 16 17 F -0.13 -4.09 17.10 44.97 0.77 -3.32 16 18 C 0.08 2.17 6.71 22.59 0.15 2.32 16 19 O -0.48 -10.73 12.81 -92.99 -1.19 -11.92 16 20 C -0.03 -0.83 6.33 22.37 0.14 -0.69 16 21 Cl -0.03 -0.68 28.49 -2.72 -0.08 -0.76 16 22 C -0.10 -2.77 9.21 22.49 0.21 -2.56 16 23 C -0.13 -6.48 8.16 23.14 0.19 -6.29 16 24 H 0.29 12.67 8.30 -92.71 -0.77 11.90 16 25 H 0.14 6.14 8.06 -2.91 -0.02 6.12 16 26 H 0.16 5.38 6.19 -2.91 -0.02 5.36 16 27 H 0.14 5.13 6.25 -2.91 -0.02 5.11 16 28 H 0.41 5.26 9.06 -74.06 -0.67 4.59 16 29 H 0.16 4.13 6.21 -2.91 -0.02 4.11 16 30 H 0.13 6.20 4.43 -2.91 -0.01 6.18 16 Total: -1.00 -55.98 287.23 3.55 -52.43 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.57 Total: 22.45 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.20 Total: -33.07 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -1.75 Total: -62.88 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.19 Total: -11.92 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.77 Total: -3.32 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -55.98 3.55 -52.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244501691.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.934 kcal (2) G-P(sol) polarization free energy of solvation -55.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds