Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48503 * 109.46831 * 270.00260 * 3 2 1 5 5 H 1.48494 * 109.47207 * 30.00159 * 3 2 1 6 6 H 1.48502 * 109.46903 * 150.00497 * 3 2 1 7 7 C 1.40031 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00152 * 165.47805 * 7 2 1 9 9 C 1.40845 * 120.00424 * 345.48058 * 7 2 1 10 10 C 1.41130 * 120.72136 * 332.86853 * 9 7 2 11 11 C 1.36866 * 118.40320 * 180.02562 * 10 9 7 12 12 C 1.38886 * 119.81668 * 0.27615 * 11 10 9 13 13 N 1.31731 * 121.50731 * 359.39861 * 12 11 10 14 14 C 1.32647 * 121.71269 * 0.63723 * 13 12 11 15 15 C 1.47682 * 119.99451 * 179.67938 * 14 13 12 16 16 C 1.39801 * 120.08388 * 316.30701 * 15 14 13 17 17 C 1.37904 * 119.90154 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.96516 * 180.02562 * 17 16 15 19 19 C 1.39174 * 120.06511 * 0.02781 * 17 16 15 20 20 O 1.35850 * 119.91604 * 179.97438 * 19 17 16 21 21 C 1.38996 * 120.16669 * 359.97144 * 19 17 16 22 22 Cl 1.73593 * 119.94830 * 180.02562 * 21 19 17 23 23 C 1.37888 * 120.09612 * 359.72842 * 21 19 17 24 24 H 0.97009 * 119.99832 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.79400 * 0.02562 * 10 9 7 26 26 H 1.08005 * 120.08973 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.24601 * 179.71889 * 12 11 10 28 28 H 1.08003 * 120.05159 * 0.02931 * 16 15 14 29 29 H 0.96699 * 114.00596 * 89.99542 * 20 19 17 30 30 H 1.08001 * 120.03394 * 180.28020 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0464 -1.4001 5 1 1.4394 2.6526 0.7000 6 1 3.5396 1.4401 0.6999 7 6 2.0081 -1.2127 -0.0005 8 1 3.0623 -1.2276 -0.2351 9 6 1.3377 -2.4132 0.3047 10 6 0.1944 -2.4102 1.1322 11 6 -0.4197 -3.6040 1.3984 12 6 0.0910 -4.7783 0.8609 13 7 1.1549 -4.7742 0.0841 14 6 1.7973 -3.6522 -0.2126 15 6 2.9906 -3.6924 -1.0818 16 6 3.9619 -4.6801 -0.8934 17 6 5.0749 -4.7138 -1.7068 18 9 6.0141 -5.6680 -1.5262 19 6 5.2316 -3.7658 -2.7137 20 8 6.3296 -3.8016 -3.5130 21 6 4.2677 -2.7826 -2.9035 22 17 4.4685 -1.6034 -4.1615 23 6 3.1491 -2.7464 -2.0980 24 1 -0.4850 0.8401 0.0004 25 1 -0.1866 -1.4879 1.5455 26 1 -1.2968 -3.6332 2.0280 27 1 -0.3982 -5.7157 1.0806 28 1 3.8407 -5.4157 -0.1119 29 1 6.2197 -4.3403 -4.3084 30 1 2.3985 -1.9847 -2.2494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244501914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -50.111504 kcal Electronic energy + Delta-G solvation = -20368.108610 eV Core-core repulsion = 16875.217749 eV Total energy + Delta-G solvation = -3492.890861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.60330 -39.44725 -38.37384 -36.44249 -36.08714 -34.36904 -31.36725 -30.86634 -30.04255 -28.18399 -25.85939 -23.20936 -22.53585 -21.54210 -20.62614 -18.42230 -17.58462 -17.13724 -16.51092 -15.74398 -15.68186 -15.13894 -14.75760 -14.61010 -14.23738 -13.97067 -13.58228 -12.98517 -12.75556 -12.38067 -12.36180 -11.99282 -11.71159 -11.58845 -11.49335 -11.20131 -10.88365 -10.81412 -10.69943 -10.38074 -10.02099 -9.58750 -8.71635 -8.40971 -8.28147 -8.19897 -7.57761 -7.09084 -4.72856 1.17514 1.44357 2.30133 2.44868 2.74943 2.91740 2.96213 3.04870 3.69542 3.81314 4.17684 4.36878 4.63867 5.10031 5.34320 5.37379 5.68777 5.70252 6.03431 6.11124 6.13426 6.34025 6.44034 6.52811 6.69188 6.80939 6.94477 6.99149 7.04564 7.50776 7.60079 7.69561 7.70845 8.16552 8.39091 8.45309 9.35553 9.78905 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.007365 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.115087 B = 3800.676605 C = 5462.352616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.438 4.438 8 H 0.091 0.909 9 C 0.091 3.909 10 C -0.125 4.125 11 C -0.144 4.144 12 C -0.028 4.028 13 N -0.447 5.447 14 C -0.006 4.006 15 C 0.065 3.935 16 C -0.131 4.131 17 C 0.081 3.919 18 F -0.136 7.136 19 C 0.051 3.949 20 O -0.479 6.479 21 C -0.037 4.037 22 Cl -0.061 7.061 23 C -0.085 4.085 24 H 0.288 0.712 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.384 0.616 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -1.674 -3.835 5.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.109 0.891 9 C 0.086 3.914 10 C -0.151 4.151 11 C -0.165 4.165 12 C -0.191 4.191 13 N -0.154 5.154 14 C -0.143 4.143 15 C 0.064 3.936 16 C -0.150 4.150 17 C 0.061 3.939 18 F -0.114 7.114 19 C 0.005 3.995 20 O -0.288 6.288 21 C -0.064 4.064 22 Cl -0.032 7.032 23 C -0.105 4.105 24 H 0.099 0.901 25 H 0.146 0.854 26 H 0.120 0.880 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.239 0.761 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.511 -1.838 -3.867 6.219 hybrid contribution -0.157 1.202 -0.039 1.213 sum 4.354 -0.636 -3.905 5.883 Atomic orbital electron populations 1.69751 1.07760 1.30271 1.32366 1.26021 0.94834 1.01778 0.91854 0.86270 0.80817 0.79836 0.80043 1.18689 1.19725 1.17909 1.19671 0.97480 0.90366 1.39055 0.89139 1.18295 0.91612 0.92301 0.89196 1.21427 0.97818 0.97123 0.98749 1.21476 0.99748 0.94432 1.00829 1.21686 0.97368 0.96641 1.03401 1.67000 1.07055 1.30140 1.11194 1.19151 0.99453 0.89908 1.05750 1.18144 0.92132 0.91400 0.91947 1.21304 0.92180 1.01087 1.00468 1.17658 0.88712 0.88584 0.98928 1.91464 1.63522 1.61716 1.94737 1.17959 0.89496 0.96321 0.95770 1.84868 1.33603 1.73291 1.37051 1.20902 0.96212 0.94202 0.95132 1.98343 1.97355 1.56480 1.51029 1.21432 0.96277 0.99952 0.92803 0.90064 0.85407 0.88031 0.85842 0.84067 0.76142 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.71 10.98 55.55 0.61 -17.10 16 2 C 0.08 1.69 5.21 -17.32 -0.09 1.60 16 3 Si 0.91 17.00 29.58 -169.99 -5.03 11.97 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.17 6.77 -37.92 -0.26 -10.43 16 8 H 0.09 2.07 6.42 -52.48 -0.34 1.73 16 9 C 0.09 2.17 5.55 -106.40 -0.59 1.58 16 10 C -0.13 -2.92 8.73 -38.98 -0.34 -3.26 16 11 C -0.14 -3.05 10.03 -39.84 -0.40 -3.45 16 12 C -0.03 -0.60 11.16 -17.35 -0.19 -0.80 16 13 N -0.45 -10.20 10.15 -9.18 -0.09 -10.30 16 14 C -0.01 -0.14 6.42 -82.25 -0.53 -0.67 16 15 C 0.07 1.35 5.25 -104.89 -0.55 0.80 16 16 C -0.13 -2.46 9.63 -39.12 -0.38 -2.84 16 17 C 0.08 1.43 7.30 -39.36 -0.29 1.14 16 18 F -0.14 -2.32 17.10 2.25 0.04 -2.28 16 19 C 0.05 0.87 6.71 -38.95 -0.26 0.61 16 20 O -0.48 -7.06 12.80 -19.27 -0.25 -7.31 16 21 C -0.04 -0.65 6.32 -39.43 -0.25 -0.90 16 22 Cl -0.06 -0.96 28.49 -51.86 -1.48 -2.44 16 23 C -0.09 -1.65 7.59 -39.15 -0.30 -1.95 16 24 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 25 H 0.13 3.01 6.34 -52.48 -0.33 2.67 16 26 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 27 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 28 H 0.14 2.60 8.06 -52.48 -0.42 2.18 16 29 H 0.38 3.84 9.06 45.56 0.41 4.26 16 30 H 0.16 3.19 6.76 -52.49 -0.35 2.84 16 LS Contribution 288.14 15.07 4.34 4.34 Total: -1.00 -25.36 288.14 -7.29 -32.65 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -1.01 Total: 9.03 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -4.42 Total: -18.57 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.52 Total: -27.40 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.25 Total: -7.31 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.36 -7.29 -32.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244501914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.461 kcal (2) G-P(sol) polarization free energy of solvation -25.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds