Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48503 * 109.46831 * 270.00260 * 3 2 1 5 5 H 1.48494 * 109.47207 * 30.00159 * 3 2 1 6 6 H 1.48502 * 109.46903 * 150.00497 * 3 2 1 7 7 C 1.40031 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00152 * 165.47805 * 7 2 1 9 9 C 1.40845 * 120.00424 * 345.48058 * 7 2 1 10 10 C 1.41130 * 120.72136 * 332.86853 * 9 7 2 11 11 C 1.36866 * 118.40320 * 180.02562 * 10 9 7 12 12 C 1.38886 * 119.81668 * 0.27615 * 11 10 9 13 13 N 1.31731 * 121.50731 * 359.39861 * 12 11 10 14 14 C 1.32647 * 121.71269 * 0.63723 * 13 12 11 15 15 C 1.47682 * 119.99451 * 179.67938 * 14 13 12 16 16 C 1.39801 * 120.08388 * 316.30701 * 15 14 13 17 17 C 1.37904 * 119.90154 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.96516 * 180.02562 * 17 16 15 19 19 C 1.39174 * 120.06511 * 0.02781 * 17 16 15 20 20 O 1.35850 * 119.91604 * 179.97438 * 19 17 16 21 21 C 1.38996 * 120.16669 * 359.97144 * 19 17 16 22 22 Cl 1.73593 * 119.94830 * 180.02562 * 21 19 17 23 23 C 1.37888 * 120.09612 * 359.72842 * 21 19 17 24 24 H 0.97009 * 119.99832 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.79400 * 0.02562 * 10 9 7 26 26 H 1.08005 * 120.08973 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.24601 * 179.71889 * 12 11 10 28 28 H 1.08003 * 120.05159 * 0.02931 * 16 15 14 29 29 H 0.96699 * 114.00596 * 89.99542 * 20 19 17 30 30 H 1.08001 * 120.03394 * 180.28020 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0464 -1.4001 5 1 1.4394 2.6526 0.7000 6 1 3.5396 1.4401 0.6999 7 6 2.0081 -1.2127 -0.0005 8 1 3.0623 -1.2276 -0.2351 9 6 1.3377 -2.4132 0.3047 10 6 0.1944 -2.4102 1.1322 11 6 -0.4197 -3.6040 1.3984 12 6 0.0910 -4.7783 0.8609 13 7 1.1549 -4.7742 0.0841 14 6 1.7973 -3.6522 -0.2126 15 6 2.9906 -3.6924 -1.0818 16 6 3.9619 -4.6801 -0.8934 17 6 5.0749 -4.7138 -1.7068 18 9 6.0141 -5.6680 -1.5262 19 6 5.2316 -3.7658 -2.7137 20 8 6.3296 -3.8016 -3.5130 21 6 4.2677 -2.7826 -2.9035 22 17 4.4685 -1.6034 -4.1615 23 6 3.1491 -2.7464 -2.0980 24 1 -0.4850 0.8401 0.0004 25 1 -0.1866 -1.4879 1.5455 26 1 -1.2968 -3.6332 2.0280 27 1 -0.3982 -5.7157 1.0806 28 1 3.8407 -5.4157 -0.1119 29 1 6.2197 -4.3403 -4.3084 30 1 2.3985 -1.9847 -2.2494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244501914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = -63.824687 kcal Electronic energy + Delta-G solvation = -20368.703258 eV Core-core repulsion = 16875.217749 eV Total energy + Delta-G solvation = -3493.485509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.98868 -40.95367 -39.91560 -37.78186 -37.45550 -36.05360 -32.95256 -32.55482 -31.51958 -29.72563 -27.54754 -24.74190 -24.03743 -23.19505 -22.21124 -19.74669 -19.26734 -18.62373 -17.94962 -17.31305 -17.10946 -16.68575 -16.27939 -16.06849 -15.75355 -15.48043 -15.00173 -14.51158 -14.34638 -13.95922 -13.83050 -13.50100 -13.25836 -13.19353 -13.09666 -12.76388 -12.31583 -12.24809 -12.11390 -11.71409 -11.66354 -11.23335 -10.33813 -10.00578 -9.92414 -9.73987 -9.19397 -8.74500 -6.46455 -0.27782 -0.01478 0.76518 0.94777 1.08194 1.38910 1.47107 1.52666 2.14944 2.34139 2.69019 2.83211 3.25650 3.55637 3.69786 3.89541 4.19034 4.20441 4.49817 4.58474 4.70907 4.73279 4.81482 4.96310 5.02380 5.16137 5.30226 5.45014 5.56515 5.80806 5.90088 5.98960 6.44340 6.61842 6.68053 6.73878 7.64103 8.16207 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.007365 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.115087 B = 3800.676605 C = 5462.352616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.046 3.954 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.035 4.035 13 N -0.462 5.462 14 C -0.017 4.017 15 C 0.041 3.959 16 C -0.127 4.127 17 C 0.082 3.918 18 F -0.130 7.130 19 C 0.074 3.926 20 O -0.480 6.480 21 C -0.039 4.039 22 Cl -0.043 7.043 23 C -0.086 4.086 24 H 0.295 0.705 25 H 0.119 0.881 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.409 0.591 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -1.702 -4.531 7.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.104 0.896 9 C 0.060 3.940 10 C -0.174 4.174 11 C -0.163 4.163 12 C -0.197 4.197 13 N -0.170 5.170 14 C -0.153 4.153 15 C 0.039 3.961 16 C -0.147 4.147 17 C 0.062 3.938 18 F -0.109 7.109 19 C 0.027 3.973 20 O -0.292 6.292 21 C -0.066 4.066 22 Cl -0.014 7.014 23 C -0.105 4.105 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.150 0.850 27 H 0.172 0.828 28 H 0.159 0.841 29 H 0.268 0.732 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.480 -1.891 -4.583 7.389 hybrid contribution -0.407 1.108 0.094 1.184 sum 5.073 -0.783 -4.489 6.819 Atomic orbital electron populations 1.69778 1.08798 1.31368 1.32941 1.26652 0.95395 1.04072 0.91141 0.85412 0.79447 0.76496 0.80066 1.18271 1.18723 1.18306 1.19729 0.97351 0.90989 1.40258 0.89588 1.18618 0.92384 0.93155 0.89876 1.21485 0.98589 0.97688 0.99688 1.21776 1.00288 0.93631 1.00567 1.22262 0.96895 0.97976 1.02542 1.67076 1.07779 1.30186 1.11939 1.19503 1.00200 0.89759 1.05858 1.18112 0.92282 0.92908 0.92762 1.21249 0.92312 1.00499 1.00637 1.17574 0.88444 0.88912 0.98916 1.91479 1.63172 1.61523 1.94723 1.17873 0.89084 0.95065 0.95298 1.84807 1.32413 1.73974 1.38049 1.20868 0.95711 0.94755 0.95284 1.98348 1.97233 1.55817 1.49976 1.21244 0.96735 0.99388 0.93179 0.89344 0.86342 0.85010 0.82777 0.84072 0.73155 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.19 10.98 21.84 0.24 -36.95 16 2 C 0.05 2.06 5.21 85.28 0.44 2.50 16 3 Si 0.97 34.72 29.58 68.60 2.03 36.75 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.46 -21.68 6.77 23.34 0.16 -21.52 16 8 H 0.09 4.04 6.42 -2.91 -0.02 4.02 16 9 C 0.06 3.16 5.55 -21.02 -0.12 3.05 16 10 C -0.15 -7.05 8.73 22.66 0.20 -6.85 16 11 C -0.14 -5.97 10.03 22.10 0.22 -5.75 16 12 C -0.03 -1.45 11.16 84.86 0.95 -0.51 16 13 N -0.46 -21.14 10.15 -182.96 -1.86 -23.00 16 14 C -0.02 -0.78 6.42 42.43 0.27 -0.51 16 15 C 0.04 1.70 5.25 -20.04 -0.11 1.59 16 16 C -0.13 -4.74 9.63 22.57 0.22 -4.52 16 17 C 0.08 2.74 7.30 22.42 0.16 2.90 16 18 F -0.13 -4.18 17.10 44.97 0.77 -3.41 16 19 C 0.07 2.34 6.71 22.68 0.15 2.49 16 20 O -0.48 -12.60 12.80 -91.86 -1.18 -13.78 16 21 C -0.04 -1.31 6.32 22.37 0.14 -1.16 16 22 Cl -0.04 -1.27 28.49 -2.72 -0.08 -1.35 16 23 C -0.09 -3.34 7.59 22.55 0.17 -3.17 16 24 H 0.30 12.31 8.30 -92.70 -0.77 11.54 16 25 H 0.12 5.74 6.34 -2.91 -0.02 5.72 16 26 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.15 5.32 8.06 -2.91 -0.02 5.30 16 28 H 0.14 5.18 8.06 -2.91 -0.02 5.15 16 29 H 0.41 6.67 9.06 -74.06 -0.67 5.99 16 30 H 0.14 5.89 6.76 -2.91 -0.02 5.87 16 Total: -1.00 -53.70 288.14 3.35 -50.36 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.55 Total: 22.84 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 2.87 Total: -31.45 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -1.62 Total: -59.95 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.18 Total: -13.78 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -53.70 3.35 -50.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244501914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.467 kcal (2) G-P(sol) polarization free energy of solvation -53.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds