Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86801 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47156 * 85.12236 * 3 2 1 5 5 H 1.48496 * 109.47092 * 205.12629 * 3 2 1 6 6 H 1.48503 * 109.46847 * 325.12406 * 3 2 1 7 7 C 1.40124 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00392 * 188.63044 * 7 2 1 9 9 C 1.40748 * 119.99749 * 8.62174 * 7 2 1 10 10 N 1.33723 * 119.95064 * 350.82242 * 9 7 2 11 11 C 1.31267 * 121.64014 * 179.97438 * 10 9 7 12 12 C 1.39083 * 121.35424 * 359.97438 * 11 10 9 13 13 C 1.38332 * 119.73974 * 0.02562 * 12 11 10 14 14 C 1.39762 * 118.47343 * 359.74066 * 13 12 11 15 15 C 1.47694 * 120.65605 * 180.27382 * 14 13 12 16 16 C 1.39815 * 120.08426 * 129.95396 * 15 14 13 17 17 C 1.37896 * 119.90009 * 179.76580 * 16 15 14 18 18 F 1.35100 * 119.96579 * 180.27494 * 17 16 15 19 19 C 1.39190 * 120.06804 * 0.50899 * 17 16 15 20 20 O 1.35856 * 119.91574 * 179.76620 * 19 17 16 21 21 C 1.39006 * 120.16528 * 359.74181 * 19 17 16 22 22 Cl 1.73599 * 119.94664 * 180.02562 * 21 19 17 23 23 C 1.37887 * 120.09836 * 359.97438 * 21 19 17 24 24 H 0.97004 * 119.99849 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.32405 * 179.97438 * 11 10 9 26 26 H 1.07996 * 120.13147 * 180.02562 * 12 11 10 27 27 H 1.08006 * 120.76214 * 179.97438 * 13 12 11 28 28 H 1.08004 * 120.04681 * 0.02562 * 16 15 14 29 29 H 0.96701 * 113.99863 * 269.97726 * 20 19 17 30 30 H 1.07998 * 120.03301 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3856 2.1059 1.3950 5 1 3.5864 1.4125 -0.5945 6 1 1.4940 2.6207 -0.8006 7 6 2.0077 -1.2135 0.0005 8 1 3.0785 -1.2188 0.1409 9 6 1.3158 -2.4256 -0.1816 10 7 -0.0213 -2.4391 -0.1713 11 6 -0.7000 -3.5502 -0.3384 12 6 -0.0576 -4.7681 -0.5350 13 6 1.3247 -4.8192 -0.5559 14 6 2.0382 -3.6301 -0.3820 15 6 3.5150 -3.6283 -0.4018 16 6 4.2039 -2.7181 -1.2091 17 6 5.5828 -2.7164 -1.2210 18 9 6.2499 -1.8338 -1.9964 19 6 6.2881 -3.6264 -0.4387 20 8 7.6465 -3.6252 -0.4565 21 6 5.6059 -4.5360 0.3610 22 17 6.4912 -5.6680 1.3349 23 6 4.2272 -4.5398 0.3826 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7794 -3.5181 -0.3230 26 1 -0.6355 -5.6702 -0.6709 27 1 1.8405 -5.7560 -0.7069 28 1 3.6569 -2.0145 -1.8193 29 1 8.0316 -4.2046 -1.1281 30 1 3.6983 -5.2467 1.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244503035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -40.993013 kcal Electronic energy + Delta-G solvation = -20339.277600 eV Core-core repulsion = 16846.782146 eV Total energy + Delta-G solvation = -3492.495454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.60048 -39.45631 -38.26674 -36.52340 -36.21785 -33.89591 -31.65915 -30.66989 -30.00048 -28.05607 -25.90273 -23.11892 -22.68500 -21.43894 -20.59326 -18.47992 -17.68271 -16.98785 -16.55479 -15.83972 -15.65805 -14.98286 -14.66094 -14.48312 -14.32130 -14.01588 -13.65767 -12.89661 -12.71562 -12.46728 -12.31308 -12.05629 -11.75818 -11.38518 -11.29326 -11.09593 -11.08992 -10.85603 -10.55076 -10.41421 -10.09105 -9.53473 -8.74421 -8.42700 -8.19553 -7.81264 -7.52985 -6.67050 -4.75324 1.16444 1.35723 2.19807 2.52363 2.77861 2.99527 3.02124 3.10208 3.77284 3.79620 4.13102 4.51825 4.62412 5.19005 5.26126 5.58412 5.60328 5.79878 5.90783 5.98372 6.09230 6.26382 6.30519 6.46365 6.60880 6.82592 6.87409 6.96427 7.10984 7.36281 7.50218 7.65608 7.79384 8.00902 8.39090 8.66645 9.84920 10.04365 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.006497 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.340277 B = 4308.643670 C = 5705.529743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.270 3.730 10 N -0.480 5.480 11 C 0.140 3.860 12 C -0.319 4.319 13 C -0.023 4.023 14 C -0.252 4.252 15 C 0.068 3.932 16 C -0.128 4.128 17 C 0.088 3.912 18 F -0.133 7.133 19 C 0.044 3.956 20 O -0.479 6.479 21 C -0.029 4.029 22 Cl -0.064 7.064 23 C -0.122 4.122 24 H 0.278 0.722 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.383 0.617 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -5.729 -1.563 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.159 4.159 3 Si 0.725 3.275 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.197 1.197 7 C -0.445 4.445 8 H 0.110 0.890 9 C 0.148 3.852 10 N -0.191 5.191 11 C -0.030 4.030 12 C -0.342 4.342 13 C -0.047 4.047 14 C -0.257 4.257 15 C 0.067 3.933 16 C -0.147 4.147 17 C 0.068 3.932 18 F -0.112 7.112 19 C -0.003 4.003 20 O -0.287 6.287 21 C -0.056 4.056 22 Cl -0.035 7.035 23 C -0.141 4.141 24 H 0.089 0.911 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.169 0.831 29 H 0.237 0.763 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.761 -4.397 -0.900 8.115 hybrid contribution 1.007 -0.430 -0.533 1.218 sum 7.768 -4.827 -1.433 9.257 Atomic orbital electron populations 1.70101 1.07379 1.28510 1.26125 1.26144 0.94913 1.01419 0.93420 0.86358 0.80996 0.80565 0.79585 1.19080 1.17895 1.19670 1.19779 0.95629 0.89610 1.39456 0.88999 1.18494 0.87918 0.90605 0.88195 1.68789 1.07306 1.26095 1.16917 1.22680 0.98987 0.88945 0.92418 1.21248 0.94484 0.98592 1.19873 1.20905 0.93909 0.95389 0.94537 1.19143 0.89567 0.95606 1.21394 1.18461 0.93406 0.90808 0.90666 1.21527 0.90786 1.01326 1.01042 1.17754 0.90165 0.91587 0.93718 1.91477 1.80751 1.66315 1.72659 1.17939 0.83488 0.98073 1.00815 1.84889 1.14870 1.68957 1.60011 1.20900 0.92273 0.94326 0.98147 1.98341 1.76138 1.59612 1.69458 1.21206 0.90542 1.01439 1.00943 0.91097 0.86082 0.88345 0.88209 0.83093 0.76255 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.45 11.51 55.56 0.64 -16.81 16 2 C 0.07 1.64 5.48 -17.32 -0.09 1.55 16 3 Si 0.90 17.82 29.57 -169.99 -5.03 12.79 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.42 -10.24 7.72 -37.93 -0.29 -10.53 16 8 H 0.09 2.17 5.69 -52.49 -0.30 1.88 16 9 C 0.27 6.76 6.54 -84.70 -0.55 6.20 16 10 N -0.48 -12.25 7.91 -10.90 -0.09 -12.34 16 11 C 0.14 3.10 11.17 -17.48 -0.20 2.91 16 12 C -0.32 -6.48 10.10 -39.23 -0.40 -6.87 16 13 C -0.02 -0.46 9.66 -38.98 -0.38 -0.84 16 14 C -0.25 -5.54 5.53 -104.08 -0.58 -6.12 16 15 C 0.07 1.32 4.97 -104.87 -0.52 0.80 16 16 C -0.13 -2.42 7.63 -39.12 -0.30 -2.72 16 17 C 0.09 1.55 7.30 -39.35 -0.29 1.26 16 18 F -0.13 -2.35 17.10 2.25 0.04 -2.32 16 19 C 0.04 0.71 6.71 -38.94 -0.26 0.45 16 20 O -0.48 -6.89 12.80 -19.29 -0.25 -7.14 16 21 C -0.03 -0.47 6.32 -39.43 -0.25 -0.72 16 22 Cl -0.06 -0.90 28.49 -51.86 -1.48 -2.38 16 23 C -0.12 -2.10 9.31 -39.14 -0.36 -2.47 16 24 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 25 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 28 H 0.15 2.96 7.32 -52.48 -0.38 2.58 16 29 H 0.38 3.67 9.06 45.56 0.41 4.09 16 30 H 0.14 2.21 8.05 -52.49 -0.42 1.79 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -27.09 289.75 -7.35 -34.44 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -1.09 Total: 6.49 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -4.47 Total: -17.10 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.55 Total: -29.15 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.25 Total: -7.14 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.09 -7.35 -34.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244503035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.549 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds