Wall clock time and date at job start Tue Mar 31 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86801 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47156 * 85.12236 * 3 2 1 5 5 H 1.48496 * 109.47092 * 205.12629 * 3 2 1 6 6 H 1.48503 * 109.46847 * 325.12406 * 3 2 1 7 7 C 1.40124 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00392 * 188.63044 * 7 2 1 9 9 C 1.40748 * 119.99749 * 8.62174 * 7 2 1 10 10 N 1.33723 * 119.95064 * 350.82242 * 9 7 2 11 11 C 1.31267 * 121.64014 * 179.97438 * 10 9 7 12 12 C 1.39083 * 121.35424 * 359.97438 * 11 10 9 13 13 C 1.38332 * 119.73974 * 0.02562 * 12 11 10 14 14 C 1.39762 * 118.47343 * 359.74066 * 13 12 11 15 15 C 1.47694 * 120.65605 * 180.27382 * 14 13 12 16 16 C 1.39815 * 120.08426 * 129.95396 * 15 14 13 17 17 C 1.37896 * 119.90009 * 179.76580 * 16 15 14 18 18 F 1.35100 * 119.96579 * 180.27494 * 17 16 15 19 19 C 1.39190 * 120.06804 * 0.50899 * 17 16 15 20 20 O 1.35856 * 119.91574 * 179.76620 * 19 17 16 21 21 C 1.39006 * 120.16528 * 359.74181 * 19 17 16 22 22 Cl 1.73599 * 119.94664 * 180.02562 * 21 19 17 23 23 C 1.37887 * 120.09836 * 359.97438 * 21 19 17 24 24 H 0.97004 * 119.99849 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.32405 * 179.97438 * 11 10 9 26 26 H 1.07996 * 120.13147 * 180.02562 * 12 11 10 27 27 H 1.08006 * 120.76214 * 179.97438 * 13 12 11 28 28 H 1.08004 * 120.04681 * 0.02562 * 16 15 14 29 29 H 0.96701 * 113.99863 * 269.97726 * 20 19 17 30 30 H 1.07998 * 120.03301 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3856 2.1059 1.3950 5 1 3.5864 1.4125 -0.5945 6 1 1.4940 2.6207 -0.8006 7 6 2.0077 -1.2135 0.0005 8 1 3.0785 -1.2188 0.1409 9 6 1.3158 -2.4256 -0.1816 10 7 -0.0213 -2.4391 -0.1713 11 6 -0.7000 -3.5502 -0.3384 12 6 -0.0576 -4.7681 -0.5350 13 6 1.3247 -4.8192 -0.5559 14 6 2.0382 -3.6301 -0.3820 15 6 3.5150 -3.6283 -0.4018 16 6 4.2039 -2.7181 -1.2091 17 6 5.5828 -2.7164 -1.2210 18 9 6.2499 -1.8338 -1.9964 19 6 6.2881 -3.6264 -0.4387 20 8 7.6465 -3.6252 -0.4565 21 6 5.6059 -4.5360 0.3610 22 17 6.4912 -5.6680 1.3349 23 6 4.2272 -4.5398 0.3826 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7794 -3.5181 -0.3230 26 1 -0.6355 -5.6702 -0.6709 27 1 1.8405 -5.7560 -0.7069 28 1 3.6569 -2.0145 -1.8193 29 1 8.0316 -4.2046 -1.1281 30 1 3.6983 -5.2467 1.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244503035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:54 Heat of formation + Delta-G solvation = -56.218803 kcal Electronic energy + Delta-G solvation = -20339.937840 eV Core-core repulsion = 16846.782146 eV Total energy + Delta-G solvation = -3493.155693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.98766 -40.88694 -39.81531 -37.81055 -37.48291 -35.61627 -33.22251 -32.30294 -31.44885 -29.57414 -27.60421 -24.61889 -24.12050 -23.08908 -22.13248 -19.76014 -19.38398 -18.41085 -17.95668 -17.39035 -17.09107 -16.41137 -16.12868 -16.08529 -15.84576 -15.45684 -15.02944 -14.48953 -14.17304 -14.02305 -13.78072 -13.44008 -13.27711 -12.99154 -12.87549 -12.74037 -12.45575 -12.18021 -12.04052 -11.72084 -11.67889 -11.23196 -10.31944 -9.82818 -9.77011 -9.54055 -9.12677 -8.38939 -6.53202 -0.21926 -0.02480 0.85668 0.94398 1.14420 1.37161 1.46504 1.52252 2.16640 2.37161 2.78675 2.84741 3.29689 3.74858 3.87976 3.89677 4.17512 4.28527 4.39604 4.47537 4.71600 4.77437 4.86793 4.92767 4.98912 5.17200 5.35595 5.45477 5.57369 5.72160 5.86857 6.11407 6.25866 6.62241 6.66232 6.91255 8.13268 8.35006 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.006497 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.340277 B = 4308.643670 C = 5705.529743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.032 3.968 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.264 1.264 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.242 3.758 10 N -0.520 5.520 11 C 0.115 3.885 12 C -0.308 4.308 13 C -0.030 4.030 14 C -0.253 4.253 15 C 0.046 3.954 16 C -0.132 4.132 17 C 0.079 3.921 18 F -0.135 7.135 19 C 0.065 3.935 20 O -0.482 6.482 21 C -0.031 4.031 22 Cl -0.039 7.039 23 C -0.110 4.110 24 H 0.282 0.718 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.408 0.592 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -7.253 -1.370 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.109 0.891 9 C 0.119 3.881 10 N -0.232 5.232 11 C -0.052 4.052 12 C -0.331 4.331 13 C -0.054 4.054 14 C -0.257 4.257 15 C 0.045 3.955 16 C -0.151 4.151 17 C 0.059 3.941 18 F -0.114 7.114 19 C 0.018 3.982 20 O -0.294 6.294 21 C -0.058 4.058 22 Cl -0.010 7.010 23 C -0.129 4.129 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.267 0.733 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.543 -5.964 -0.723 10.443 hybrid contribution 0.588 -0.193 -0.600 0.862 sum 9.131 -6.157 -1.323 11.092 Atomic orbital electron populations 1.70177 1.08683 1.29396 1.28183 1.26873 0.95538 1.04146 0.92643 0.85419 0.79492 0.76869 0.79610 1.18666 1.18125 1.18808 1.19936 0.95714 0.90467 1.41687 0.89098 1.18889 0.88313 0.92043 0.88897 1.68712 1.08066 1.27944 1.18525 1.23110 1.00034 0.89247 0.92771 1.21614 0.94965 0.98979 1.17502 1.21309 0.94104 0.96189 0.93816 1.19397 0.91092 0.95292 1.19943 1.18360 0.92377 0.92399 0.92379 1.21377 0.91464 1.01031 1.01232 1.17756 0.89743 0.92204 0.94398 1.91469 1.80604 1.66511 1.72792 1.17903 0.84287 0.96754 0.99258 1.84824 1.13545 1.69893 1.61145 1.20878 0.92061 0.94666 0.98192 1.98355 1.75429 1.58540 1.68666 1.21247 0.91066 1.00577 1.00035 0.90728 0.84332 0.85043 0.84871 0.84834 0.73279 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.51 11.51 21.86 0.25 -38.25 16 2 C 0.03 1.56 5.48 85.32 0.47 2.03 16 3 Si 0.97 37.57 29.57 68.60 2.03 39.60 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.45 -22.92 7.72 23.34 0.18 -22.74 16 8 H 0.09 4.47 5.69 -2.91 -0.02 4.45 16 9 C 0.24 12.46 6.54 40.37 0.26 12.72 16 10 N -0.52 -27.37 7.91 -188.41 -1.49 -28.86 16 11 C 0.12 5.16 11.17 84.98 0.95 6.11 16 12 C -0.31 -12.00 10.10 22.50 0.23 -11.78 16 13 C -0.03 -1.16 9.66 22.66 0.22 -0.94 16 14 C -0.25 -11.09 5.53 -19.51 -0.11 -11.20 16 15 C 0.05 1.77 4.97 -20.03 -0.10 1.67 16 16 C -0.13 -5.01 7.63 22.57 0.17 -4.83 16 17 C 0.08 2.70 7.30 22.42 0.16 2.86 16 18 F -0.14 -4.63 17.10 44.97 0.77 -3.86 16 19 C 0.07 1.96 6.71 22.68 0.15 2.11 16 20 O -0.48 -12.27 12.80 -91.93 -1.18 -13.44 16 21 C -0.03 -0.90 6.32 22.37 0.14 -0.76 16 22 Cl -0.04 -0.96 28.49 -2.72 -0.08 -1.04 16 23 C -0.11 -3.57 9.31 22.56 0.21 -3.36 16 24 H 0.28 13.20 8.29 -92.71 -0.77 12.43 16 25 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 26 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 27 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.13 5.47 7.32 -2.91 -0.02 5.45 16 29 H 0.41 6.26 9.06 -74.06 -0.67 5.59 16 30 H 0.15 4.42 8.05 -2.91 -0.02 4.39 16 Total: -1.00 -59.18 289.75 3.79 -55.39 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.55 Total: 18.57 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 2.94 Total: -28.11 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.24 Total: -67.11 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.18 Total: -13.44 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.77 Total: -3.86 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -59.18 3.79 -55.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244503035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.831 kcal (2) G-P(sol) polarization free energy of solvation -59.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds