Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47341 * 240.00417 * 3 2 1 5 5 H 1.48504 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46676 * 120.00283 * 3 2 1 7 7 C 1.40011 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00034 * 163.38625 * 7 2 1 9 9 C 1.41041 * 119.99564 * 343.38801 * 7 2 1 10 10 C 1.41318 * 120.55227 * 335.48912 * 9 7 2 11 11 C 1.36568 * 118.41905 * 179.97438 * 10 9 7 12 12 C 1.39948 * 119.46521 * 0.27612 * 11 10 9 13 13 C 1.47870 * 119.45313 * 179.70394 * 12 11 10 14 14 C 1.39756 * 120.14046 * 310.63378 * 13 12 11 15 15 F 1.35092 * 120.12450 * 0.02666 * 14 13 12 16 16 C 1.38654 * 119.75401 * 179.81379 * 14 13 12 17 17 O 1.35983 * 119.97114 * 180.20820 * 16 14 13 18 18 C 1.38761 * 120.04856 * 0.44715 * 16 14 13 19 19 C 1.38334 * 120.29223 * 359.78452 * 18 16 14 20 20 C 1.38052 * 120.24177 * 0.02562 * 19 18 16 21 21 Cl 1.73597 * 120.02615 * 180.02562 * 20 19 18 22 22 N 1.33049 * 121.09008 * 359.41873 * 12 11 10 23 23 C 1.31264 * 121.71574 * 0.59850 * 22 12 11 24 24 H 0.97004 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.78777 * 0.02562 * 10 9 7 26 26 H 1.08007 * 120.26520 * 179.97438 * 11 10 9 27 27 H 0.96697 * 114.00703 * 270.23531 * 17 16 14 28 28 H 1.08000 * 119.85100 * 179.76488 * 18 16 14 29 29 H 1.08006 * 119.88069 * 179.97438 * 19 18 16 30 30 H 1.08002 * 119.79486 * 179.72109 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0081 -1.2125 -0.0005 8 1 3.0542 -1.2319 -0.2680 9 6 1.3469 -2.4086 0.3481 10 6 0.1963 -2.3806 1.1681 11 6 -0.4098 -3.5645 1.4782 12 6 0.1235 -4.7608 0.9852 13 6 -0.5291 -6.0430 1.3266 14 6 -0.8497 -6.3354 2.6550 15 9 -0.5652 -5.4473 3.6324 16 6 -1.4651 -7.5385 2.9656 17 8 -1.7829 -7.8257 4.2562 18 6 -1.7523 -8.4517 1.9611 19 6 -1.4313 -8.1664 0.6461 20 6 -0.8221 -6.9705 0.3228 21 17 -0.4224 -6.6180 -1.3293 22 7 1.2047 -4.7629 0.2098 23 6 1.8225 -3.6515 -0.1159 24 1 -0.4850 0.8401 0.0004 25 1 -0.1950 -1.4451 1.5399 26 1 -1.2907 -3.5778 2.1030 27 1 -1.0820 -8.2816 4.7418 28 1 -2.2282 -9.3894 2.2071 29 1 -1.6575 -8.8822 -0.1304 30 1 2.7005 -3.6897 -0.7437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244537780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = -65.326397 kcal Electronic energy + Delta-G solvation = -20137.208578 eV Core-core repulsion = 16643.657949 eV Total energy + Delta-G solvation = -3493.550628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.92967 -40.77584 -39.96144 -38.10951 -36.91121 -36.06135 -33.19926 -32.59559 -30.88839 -30.39580 -27.42326 -24.61542 -24.00553 -23.14257 -22.45987 -19.57198 -19.34387 -18.55843 -17.99826 -17.45998 -17.24043 -16.56468 -16.38135 -15.94162 -15.68441 -15.56785 -14.72275 -14.47857 -14.44809 -13.97633 -13.81476 -13.63305 -13.38738 -13.19944 -13.07475 -12.76497 -12.32963 -12.03672 -11.88608 -11.78052 -11.58489 -11.24844 -10.27607 -10.25754 -9.99111 -9.56716 -9.26436 -8.78027 -6.50838 -0.20462 -0.08798 0.76394 1.06135 1.22891 1.37430 1.49509 1.52723 2.13749 2.28559 2.63126 2.91685 3.29783 3.58513 3.61021 3.88458 4.04386 4.19837 4.41096 4.61986 4.72296 4.82664 4.90641 4.93815 5.03300 5.09298 5.15201 5.28724 5.52111 5.74291 5.84821 5.91905 6.40489 6.63595 6.69152 6.69213 7.61176 8.12897 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.004643 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.614428 B = 6029.319051 C = 6849.533949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.094 0.906 9 C 0.049 3.951 10 C -0.163 4.163 11 C -0.117 4.117 12 C -0.019 4.019 13 C -0.027 4.027 14 C 0.056 3.944 15 F -0.140 7.140 16 C 0.086 3.914 17 O -0.492 6.492 18 C -0.100 4.100 19 C -0.092 4.092 20 C -0.025 4.025 21 Cl -0.056 7.056 22 N -0.432 5.432 23 C -0.035 4.035 24 H 0.296 0.704 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.414 0.586 28 H 0.189 0.811 29 H 0.176 0.824 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -12.058 3.149 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.112 0.888 9 C 0.044 3.956 10 C -0.188 4.188 11 C -0.137 4.137 12 C -0.154 4.154 13 C -0.030 4.030 14 C 0.035 3.965 15 F -0.119 7.119 16 C 0.040 3.960 17 O -0.305 6.305 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.052 4.052 21 Cl -0.027 7.027 22 N -0.139 5.139 23 C -0.199 4.199 24 H 0.107 0.893 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.273 0.727 28 H 0.206 0.794 29 H 0.193 0.807 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.484 -12.369 2.599 13.110 hybrid contribution 0.503 1.978 0.459 2.092 sum -2.981 -10.391 3.058 11.234 Atomic orbital electron populations 1.69827 1.09443 1.31665 1.32276 1.27000 0.95527 1.05163 0.90713 0.85084 0.78706 0.74578 0.80466 1.17746 1.19077 1.18221 1.19952 0.98548 0.91576 1.39044 0.88766 1.18899 0.92365 0.94724 0.89580 1.21284 0.99521 0.96930 1.01072 1.21342 0.99288 0.93395 0.99668 1.18729 0.98543 0.90777 1.07360 1.18479 0.99296 0.94082 0.91135 1.18374 1.03576 0.90292 0.84279 1.91446 1.91805 1.67794 1.60857 1.18391 0.99044 0.91615 0.86924 1.84820 1.45011 1.80692 1.19963 1.21570 0.99932 1.00281 0.90103 1.21282 0.97157 0.94462 0.98126 1.21055 1.02260 0.96100 0.85832 1.98367 1.92716 1.95192 1.16444 1.67082 1.06294 1.31552 1.09004 1.22665 1.03435 0.87803 1.06032 0.89286 0.86617 0.87834 0.72671 0.79366 0.80652 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.44 10.91 21.84 0.24 -40.20 16 2 C 0.03 1.62 5.19 85.28 0.44 2.06 16 3 Si 0.99 35.59 29.59 68.60 2.03 37.62 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.27 -9.07 7.11 99.48 0.71 -8.37 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 7 C -0.46 -23.67 9.07 23.39 0.21 -23.46 16 8 H 0.09 4.49 7.90 -2.91 -0.02 4.47 16 9 C 0.05 2.63 5.59 -21.17 -0.12 2.52 16 10 C -0.16 -8.75 8.73 22.64 0.20 -8.55 16 11 C -0.12 -5.87 8.79 22.29 0.20 -5.68 16 12 C -0.02 -0.91 5.70 41.93 0.24 -0.67 16 13 C -0.03 -1.10 5.60 -19.99 -0.11 -1.21 16 14 C 0.06 2.00 7.15 22.74 0.16 2.16 16 15 F -0.14 -5.60 15.65 44.97 0.70 -4.89 16 16 C 0.09 2.28 6.70 22.49 0.15 2.43 16 17 O -0.49 -10.79 13.36 -93.35 -1.25 -12.04 16 18 C -0.10 -2.01 9.97 22.42 0.22 -1.79 16 19 C -0.09 -2.13 9.81 22.25 0.22 -1.91 16 20 C -0.02 -0.84 6.33 22.60 0.14 -0.69 16 21 Cl -0.06 -2.02 26.97 -2.72 -0.07 -2.09 16 22 N -0.43 -21.49 8.83 -182.74 -1.61 -23.11 16 23 C -0.03 -1.77 10.97 85.44 0.94 -0.84 16 24 H 0.30 13.28 8.30 -92.71 -0.77 12.51 16 25 H 0.12 6.34 6.21 -2.91 -0.02 6.32 16 26 H 0.10 4.90 7.70 -2.91 -0.02 4.88 16 27 H 0.41 4.83 9.06 -74.06 -0.67 4.15 16 28 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.14 6.62 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -64.82 289.56 3.48 -61.34 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.55 Total: 19.00 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 2.89 Total: -35.64 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.38 Total: -63.31 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.25 Total: -12.04 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.70 Total: -4.89 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -64.82 3.48 -61.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244537780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.986 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds