Wall clock time and date at job start Tue Mar 31 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86795 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27347 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27549 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27507 * 3 2 1 7 7 C 1.40095 * 119.99638 * 180.27448 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72757 * 7 2 1 9 9 C 1.40956 * 119.99895 * 359.72540 * 7 2 1 10 10 C 1.40898 * 119.67801 * 180.02562 * 9 7 2 11 11 C 1.36639 * 119.25866 * 180.02562 * 10 9 7 12 12 C 1.40310 * 118.60882 * 359.97438 * 11 10 9 13 13 C 1.47888 * 120.35178 * 180.02562 * 12 11 10 14 14 C 1.39769 * 120.14194 * 244.72538 * 13 12 11 15 15 F 1.35100 * 120.11623 * 0.02562 * 14 13 12 16 16 C 1.38627 * 119.76064 * 179.76681 * 14 13 12 17 17 O 1.35978 * 119.97560 * 180.22652 * 16 14 13 18 18 C 1.38781 * 120.04905 * 0.50839 * 16 14 13 19 19 C 1.38351 * 120.28795 * 359.74333 * 18 16 14 20 20 C 1.38046 * 120.24045 * 359.97438 * 19 18 16 21 21 Cl 1.73605 * 120.02560 * 180.02562 * 20 19 18 22 22 C 1.40136 * 119.30055 * 0.02562 * 12 11 10 23 23 N 1.31192 * 120.68141 * 359.71557 * 22 12 11 24 24 H 0.97000 * 119.99310 * 359.72764 * 1 2 3 25 25 H 1.08003 * 120.36798 * 0.02562 * 10 9 7 26 26 H 1.08004 * 120.69607 * 179.97438 * 11 10 9 27 27 H 0.96705 * 114.00648 * 270.28327 * 17 16 14 28 28 H 1.07999 * 119.85913 * 179.71821 * 18 16 14 29 29 H 1.08002 * 119.88016 * 179.97438 * 19 18 16 30 30 H 1.07999 * 119.66431 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4830 2.0496 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5418 1.4383 0.6942 7 6 2.0076 -1.2133 -0.0058 8 1 3.0876 -1.2133 -0.0103 9 6 1.3028 -2.4340 -0.0058 10 6 2.0140 -3.6502 -0.0111 11 6 1.3221 -4.8285 -0.0116 12 6 -0.0803 -4.7841 -0.0062 13 6 -0.8676 -6.0359 -0.0060 14 6 -1.6822 -6.3529 -1.0966 15 9 -1.7530 -5.5169 -2.1555 16 6 -2.4131 -7.5308 -1.0901 17 8 -3.2035 -7.8458 -2.1509 18 6 -2.3433 -8.3860 0.0006 19 6 -1.5417 -8.0717 1.0835 20 6 -0.8043 -6.9047 1.0872 21 17 0.2003 -6.5162 2.4487 22 6 -0.7270 -3.5409 -0.0011 23 7 -0.0351 -2.4263 0.0043 24 1 -0.4849 0.8401 0.0040 25 1 3.0940 -3.6512 -0.0148 26 1 1.8437 -5.7742 -0.0161 27 1 -4.1080 -7.5110 -2.0806 28 1 -2.9176 -9.3007 0.0044 29 1 -1.4926 -8.7418 1.9291 30 1 -1.8062 -3.4998 0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244541166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:23 Heat of formation + Delta-G solvation = -39.145294 kcal Electronic energy + Delta-G solvation = -20128.084466 eV Core-core repulsion = 16635.669135 eV Total energy + Delta-G solvation = -3492.415330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.45729 -39.45154 -38.20110 -36.94853 -35.73815 -33.87168 -31.83679 -30.60214 -29.42188 -28.82594 -25.77067 -22.85955 -22.56212 -21.70460 -20.71245 -18.30770 -17.60670 -17.30099 -16.61400 -15.93010 -15.55429 -15.17316 -14.61594 -14.42742 -14.16382 -14.06019 -13.44205 -12.93905 -12.80016 -12.57159 -12.25080 -12.01443 -11.94554 -11.26794 -11.20825 -11.09139 -10.88431 -10.72648 -10.60004 -10.40410 -10.03943 -9.49937 -8.74418 -8.38270 -8.28725 -7.67707 -7.53806 -6.54186 -4.65880 1.03246 1.19093 2.40474 2.57322 3.01732 3.04021 3.04297 3.07638 3.49465 3.83773 4.03789 4.47402 4.59385 4.88029 5.13324 5.25183 5.68552 5.76675 5.96776 5.99072 6.05010 6.10098 6.21186 6.31487 6.67338 6.70693 6.78205 6.96957 7.27987 7.45484 7.54325 7.62362 7.91658 8.07996 8.50273 8.79005 9.98782 10.15700 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.004650 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.266801 B = 6019.541635 C = 6805.275865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.065 3.935 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.087 0.913 9 C 0.257 3.743 10 C -0.272 4.272 11 C -0.018 4.018 12 C -0.291 4.291 13 C 0.012 3.988 14 C 0.080 3.920 15 F -0.121 7.121 16 C 0.073 3.927 17 O -0.489 6.489 18 C -0.130 4.130 19 C -0.107 4.107 20 C -0.025 4.025 21 Cl -0.052 7.052 22 C 0.168 3.832 23 N -0.487 5.487 24 H 0.276 0.724 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.389 0.611 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -10.920 1.750 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.162 4.162 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.443 4.443 8 H 0.105 0.895 9 C 0.134 3.866 10 C -0.294 4.294 11 C -0.041 4.041 12 C -0.296 4.296 13 C 0.009 3.991 14 C 0.059 3.941 15 F -0.099 7.099 16 C 0.027 3.973 17 O -0.299 6.299 18 C -0.149 4.149 19 C -0.126 4.126 20 C -0.052 4.052 21 Cl -0.022 7.022 22 C 0.000 4.000 23 N -0.198 5.198 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.245 0.755 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.771 -10.109 1.628 11.296 hybrid contribution 0.380 0.174 0.034 0.419 sum -4.390 -9.935 1.662 10.988 Atomic orbital electron populations 1.70128 1.07350 1.28250 1.26448 1.26179 0.94985 1.01422 0.93652 0.86267 0.80487 0.80402 0.79417 1.19204 1.19924 1.18363 1.19740 0.94596 0.89564 1.40365 0.89486 1.18641 0.88468 0.91932 0.87597 1.21356 0.98808 0.93407 1.15854 1.20413 0.92189 0.96715 0.94776 1.18630 0.93110 0.90896 1.27003 1.18722 0.94976 0.95107 0.90253 1.18179 1.01397 0.88754 0.85726 1.91517 1.94826 1.70088 1.53491 1.18392 0.96963 0.92876 0.89035 1.84868 1.26047 1.78556 1.40426 1.21065 1.01480 1.00436 0.91926 1.20835 0.96829 0.95844 0.99111 1.20989 0.97788 0.96085 0.90309 1.98369 1.67561 1.94201 1.42112 1.22562 0.98264 0.87431 0.91782 1.68806 1.07113 1.25723 1.18160 0.91242 0.88097 0.88765 0.75477 0.84243 0.84488 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.25 11.44 55.55 0.64 -17.61 16 2 C 0.06 1.60 5.50 -17.33 -0.10 1.51 16 3 Si 0.91 17.99 29.56 -169.99 -5.02 12.96 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.41 -10.75 9.12 -37.86 -0.35 -11.09 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.26 6.90 6.55 -84.98 -0.56 6.34 16 10 C -0.27 -6.57 9.76 -39.15 -0.38 -6.95 16 11 C -0.02 -0.39 8.93 -39.38 -0.35 -0.74 16 12 C -0.29 -6.42 4.39 -104.46 -0.46 -6.88 16 13 C 0.01 0.23 5.35 -104.80 -0.56 -0.33 16 14 C 0.08 1.42 7.26 -38.87 -0.28 1.13 16 15 F -0.12 -2.39 16.52 2.25 0.04 -2.35 16 16 C 0.07 1.05 6.70 -39.24 -0.26 0.79 16 17 O -0.49 -6.21 13.36 -19.67 -0.26 -6.47 16 18 C -0.13 -1.57 9.98 -39.34 -0.39 -1.96 16 19 C -0.11 -1.37 9.81 -39.61 -0.39 -1.76 16 20 C -0.02 -0.40 6.33 -39.08 -0.25 -0.64 16 21 Cl -0.05 -0.84 27.32 -51.86 -1.42 -2.26 16 22 C 0.17 4.10 10.74 -17.11 -0.18 3.91 16 23 N -0.49 -13.27 7.83 -10.83 -0.08 -13.36 16 24 H 0.28 6.46 8.29 -40.82 -0.34 6.13 16 25 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 26 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 27 H 0.39 3.00 9.07 45.56 0.41 3.41 16 28 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -29.77 293.26 -7.45 -37.22 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -1.25 Total: 4.14 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.51 Total: -16.68 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.55 Total: -30.97 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.26 Total: -6.47 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.42 Total: -2.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.77 -7.45 -37.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244541166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.929 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds