Wall clock time and date at job start Tue Mar 31 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86795 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27347 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27549 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27507 * 3 2 1 7 7 C 1.40095 * 119.99638 * 180.27448 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72757 * 7 2 1 9 9 C 1.40956 * 119.99895 * 359.72540 * 7 2 1 10 10 C 1.40898 * 119.67801 * 180.02562 * 9 7 2 11 11 C 1.36639 * 119.25866 * 180.02562 * 10 9 7 12 12 C 1.40310 * 118.60882 * 359.97438 * 11 10 9 13 13 C 1.47888 * 120.35178 * 180.02562 * 12 11 10 14 14 C 1.39769 * 120.14194 * 244.72538 * 13 12 11 15 15 F 1.35100 * 120.11623 * 0.02562 * 14 13 12 16 16 C 1.38627 * 119.76064 * 179.76681 * 14 13 12 17 17 O 1.35978 * 119.97560 * 180.22652 * 16 14 13 18 18 C 1.38781 * 120.04905 * 0.50839 * 16 14 13 19 19 C 1.38351 * 120.28795 * 359.74333 * 18 16 14 20 20 C 1.38046 * 120.24045 * 359.97438 * 19 18 16 21 21 Cl 1.73605 * 120.02560 * 180.02562 * 20 19 18 22 22 C 1.40136 * 119.30055 * 0.02562 * 12 11 10 23 23 N 1.31192 * 120.68141 * 359.71557 * 22 12 11 24 24 H 0.97000 * 119.99310 * 359.72764 * 1 2 3 25 25 H 1.08003 * 120.36798 * 0.02562 * 10 9 7 26 26 H 1.08004 * 120.69607 * 179.97438 * 11 10 9 27 27 H 0.96705 * 114.00648 * 270.28327 * 17 16 14 28 28 H 1.07999 * 119.85913 * 179.71821 * 18 16 14 29 29 H 1.08002 * 119.88016 * 179.97438 * 19 18 16 30 30 H 1.07999 * 119.66431 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4830 2.0496 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5418 1.4383 0.6942 7 6 2.0076 -1.2133 -0.0058 8 1 3.0876 -1.2133 -0.0103 9 6 1.3028 -2.4340 -0.0058 10 6 2.0140 -3.6502 -0.0111 11 6 1.3221 -4.8285 -0.0116 12 6 -0.0803 -4.7841 -0.0062 13 6 -0.8676 -6.0359 -0.0060 14 6 -1.6822 -6.3529 -1.0966 15 9 -1.7530 -5.5169 -2.1555 16 6 -2.4131 -7.5308 -1.0901 17 8 -3.2035 -7.8458 -2.1509 18 6 -2.3433 -8.3860 0.0006 19 6 -1.5417 -8.0717 1.0835 20 6 -0.8043 -6.9047 1.0872 21 17 0.2003 -6.5162 2.4487 22 6 -0.7270 -3.5409 -0.0011 23 7 -0.0351 -2.4263 0.0043 24 1 -0.4849 0.8401 0.0040 25 1 3.0940 -3.6512 -0.0148 26 1 1.8437 -5.7742 -0.0161 27 1 -4.1080 -7.5110 -2.0806 28 1 -2.9176 -9.3007 0.0044 29 1 -1.4926 -8.7418 1.9291 30 1 -1.8062 -3.4998 0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244541166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:22 Heat of formation + Delta-G solvation = -57.714009 kcal Electronic energy + Delta-G solvation = -20128.889665 eV Core-core repulsion = 16635.669135 eV Total energy + Delta-G solvation = -3493.220530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.87826 -40.72938 -39.88216 -38.15915 -36.96152 -35.65039 -33.39668 -32.46640 -30.76431 -30.27216 -27.49348 -24.35203 -23.99079 -23.33792 -22.31019 -19.52233 -19.41594 -18.54424 -17.89814 -17.57504 -17.00721 -16.56549 -16.08799 -15.98368 -15.80158 -15.49016 -14.70415 -14.45977 -14.25756 -13.97110 -13.95043 -13.65368 -13.22870 -12.88153 -12.84924 -12.76566 -12.41833 -12.08586 -11.88914 -11.82927 -11.59725 -11.25551 -10.28627 -10.05320 -9.57542 -9.55721 -9.28270 -8.36800 -6.58041 -0.13824 -0.03654 0.79853 1.15658 1.17059 1.39301 1.50472 1.54655 2.19299 2.30806 2.75771 2.96059 3.32674 3.73791 3.81365 3.95246 4.09944 4.14083 4.30894 4.53807 4.75713 4.84490 4.90726 4.94922 5.05058 5.08967 5.15234 5.42889 5.52917 5.64321 5.80040 6.05979 6.19141 6.64138 6.69021 6.87742 8.10097 8.36142 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.004650 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.266801 B = 6019.541635 C = 6805.275865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.021 3.979 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.452 4.452 8 H 0.095 0.905 9 C 0.225 3.775 10 C -0.285 4.285 11 C -0.020 4.020 12 C -0.267 4.267 13 C -0.023 4.023 14 C 0.052 3.948 15 F -0.144 7.144 16 C 0.085 3.915 17 O -0.495 6.495 18 C -0.103 4.103 19 C -0.089 4.089 20 C -0.032 4.032 21 Cl -0.060 7.060 22 C 0.142 3.858 23 N -0.520 5.520 24 H 0.282 0.718 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.413 0.587 28 H 0.186 0.814 29 H 0.176 0.824 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -13.431 2.218 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.202 4.202 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.308 4.308 11 C -0.044 4.044 12 C -0.272 4.272 13 C -0.025 4.025 14 C 0.032 3.968 15 F -0.122 7.122 16 C 0.039 3.961 17 O -0.308 6.308 18 C -0.122 4.122 19 C -0.108 4.108 20 C -0.059 4.059 21 Cl -0.031 7.031 22 C -0.024 4.024 23 N -0.232 5.232 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.273 0.727 28 H 0.203 0.797 29 H 0.193 0.807 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.462 -12.656 2.095 13.942 hybrid contribution 0.407 0.613 -0.135 0.748 sum -5.055 -12.043 1.959 13.207 Atomic orbital electron populations 1.70229 1.09129 1.29520 1.27980 1.27119 0.95745 1.04871 0.92431 0.85074 0.79048 0.75252 0.79560 1.18657 1.19106 1.17582 1.20087 0.95167 0.90449 1.42562 0.88739 1.19077 0.88783 0.93389 0.88659 1.21550 0.99584 0.93415 1.16227 1.20695 0.92580 0.97056 0.94033 1.18852 0.93413 0.91853 1.23111 1.18595 0.96755 0.94824 0.92350 1.18523 1.02799 0.90165 0.85320 1.91455 1.95152 1.71112 1.54524 1.18489 0.96230 0.91570 0.89816 1.84814 1.27577 1.78348 1.40065 1.21555 0.99956 1.00740 0.89910 1.21270 0.94679 0.94480 1.00336 1.21105 0.98549 0.96848 0.89395 1.98371 1.67976 1.94425 1.42329 1.22784 0.98600 0.88167 0.92847 1.68721 1.07787 1.27406 1.19322 0.90723 0.86855 0.86430 0.72700 0.79691 0.80708 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.67 11.44 21.85 0.25 -40.42 16 2 C 0.02 1.08 5.50 85.31 0.47 1.55 16 3 Si 0.99 37.77 29.56 68.60 2.03 39.80 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.45 -24.60 9.12 23.39 0.21 -24.39 16 8 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 9 C 0.22 12.66 6.55 40.16 0.26 12.93 16 10 C -0.29 -14.27 9.76 22.55 0.22 -14.05 16 11 C -0.02 -0.91 8.93 22.40 0.20 -0.71 16 12 C -0.27 -12.03 4.39 -19.76 -0.09 -12.11 16 13 C -0.02 -0.83 5.35 -19.98 -0.11 -0.94 16 14 C 0.05 1.79 7.26 22.73 0.16 1.96 16 15 F -0.14 -5.78 16.52 44.97 0.74 -5.04 16 16 C 0.08 2.16 6.70 22.49 0.15 2.31 16 17 O -0.49 -10.81 13.36 -93.30 -1.25 -12.05 16 18 C -0.10 -1.93 9.98 22.43 0.22 -1.70 16 19 C -0.09 -1.85 9.81 22.25 0.22 -1.63 16 20 C -0.03 -0.96 6.33 22.60 0.14 -0.81 16 21 Cl -0.06 -1.88 27.32 -2.72 -0.07 -1.95 16 22 C 0.14 7.27 10.74 85.25 0.92 8.18 16 23 N -0.52 -29.91 7.83 -188.19 -1.47 -31.38 16 24 H 0.28 13.78 8.29 -92.71 -0.77 13.01 16 25 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 26 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.41 4.87 9.07 -74.05 -0.67 4.20 16 28 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.12 5.74 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -68.91 293.26 3.75 -65.16 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.54 Total: 15.32 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 2.99 Total: -29.42 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.22 Total: -71.81 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.25 Total: -12.05 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.74 Total: -5.04 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -68.91 3.75 -65.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244541166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.446 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds