Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86798 * 120.00429 * 2 1 4 4 H 1.48499 * 109.47358 * 240.00295 * 3 2 1 5 5 H 1.48506 * 109.46702 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47436 * 119.99846 * 3 2 1 7 7 C 1.40041 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99439 * 179.97438 * 7 2 1 9 9 C 1.41427 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.40454 * 119.77833 * 180.02562 * 9 7 2 11 11 C 1.39344 * 118.83230 * 179.72399 * 10 9 7 12 12 C 1.48330 * 120.82150 * 180.29065 * 11 10 9 13 13 C 1.39456 * 120.11740 * 245.22465 * 12 11 10 14 14 F 1.35101 * 120.10393 * 0.02562 * 13 12 11 15 15 C 1.38706 * 119.79416 * 180.02562 * 13 12 11 16 16 O 1.35987 * 119.99344 * 179.97438 * 15 13 12 17 17 C 1.38714 * 120.02307 * 0.02562 * 15 13 12 18 18 C 1.38276 * 120.23200 * 359.97438 * 17 15 13 19 19 C 1.38141 * 120.20713 * 359.72315 * 18 17 15 20 20 Cl 1.73604 * 120.00780 * 180.27309 * 19 18 17 21 21 C 1.40054 * 118.35433 * 0.50971 * 11 10 9 22 22 C 1.38489 * 119.41975 * 359.48394 * 21 11 10 23 23 N 1.31492 * 121.14950 * 0.25239 * 22 21 11 24 24 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.57926 * 359.96859 * 10 9 7 26 26 H 0.96705 * 113.99248 * 90.00082 * 16 15 13 27 27 H 1.08000 * 119.88564 * 180.02562 * 17 15 13 28 28 H 1.07991 * 119.89336 * 179.97438 * 18 17 15 29 29 H 1.08002 * 120.29307 * 179.76261 * 21 11 10 30 30 H 1.08003 * 119.42600 * 180.27859 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3003 -2.4376 0.0005 10 6 2.0072 -3.6513 0.0016 11 6 1.2906 -4.8463 0.0075 12 6 1.9923 -6.1532 0.0153 13 6 1.8789 -7.0148 -1.0753 14 9 1.1300 -6.6617 -2.1429 15 6 2.5375 -8.2355 -1.0607 16 8 2.4293 -9.0790 -2.1218 17 6 3.3055 -8.5966 0.0365 18 6 3.4186 -7.7430 1.1185 19 6 2.7719 -6.5224 1.1114 20 17 2.9232 -5.4517 2.4696 21 6 -0.1085 -4.7830 0.0011 22 6 -0.7335 -3.5471 0.0001 23 7 -0.0362 -2.4323 0.0001 24 1 -0.4849 0.8401 0.0004 25 1 3.0872 -3.6581 0.0020 26 1 3.1053 -8.9459 -2.8005 27 1 3.8177 -9.5474 0.0454 28 1 4.0176 -8.0299 1.9700 29 1 -0.6949 -5.6899 0.0015 30 1 -1.8124 -3.4982 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244541324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -36.146304 kcal Electronic energy + Delta-G solvation = -20170.877731 eV Core-core repulsion = 16678.592447 eV Total energy + Delta-G solvation = -3492.285284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.64574 -39.62946 -38.19474 -37.05957 -35.85961 -33.73643 -32.27792 -30.04013 -29.56665 -28.76043 -25.72100 -23.58191 -22.65142 -21.38870 -20.82399 -18.61021 -17.47802 -17.24439 -16.72119 -15.97338 -15.39366 -15.21558 -14.72397 -14.48222 -14.21402 -14.07227 -13.59108 -13.20273 -12.89920 -12.67889 -12.30315 -12.01840 -12.00364 -11.26172 -11.19155 -11.05839 -10.84477 -10.71930 -10.66905 -10.43392 -10.02139 -9.41007 -8.87934 -8.51347 -8.01862 -7.68071 -7.61323 -6.42634 -4.55004 0.87101 1.01329 2.27399 2.72188 2.76607 3.07345 3.09366 3.17259 3.31411 3.90387 3.93326 4.30897 4.69038 4.70963 4.95169 5.05931 5.46575 5.71787 5.85790 5.91959 5.97470 6.04204 6.11431 6.41457 6.53532 6.66012 6.81523 7.08267 7.25829 7.41463 7.46457 7.58227 7.91755 8.19021 8.61650 8.87617 10.07643 10.29567 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.004863 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.771206 B = 5756.449916 C = 6283.265235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.430 4.430 8 H 0.083 0.917 9 C 0.256 3.744 10 C -0.232 4.232 11 C -0.011 4.011 12 C -0.028 4.028 13 C 0.096 3.904 14 F -0.118 7.118 15 C 0.071 3.929 16 O -0.487 6.487 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.012 4.012 20 Cl -0.040 7.040 21 C -0.290 4.290 22 C 0.126 3.874 23 N -0.478 5.478 24 H 0.274 0.726 25 H 0.100 0.900 26 H 0.391 0.609 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -12.162 0.500 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.156 4.156 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.131 3.869 10 C -0.255 4.255 11 C -0.017 4.017 12 C -0.030 4.030 13 C 0.075 3.925 14 F -0.096 7.096 15 C 0.025 3.975 16 O -0.297 6.297 17 C -0.136 4.136 18 C -0.128 4.128 19 C -0.039 4.039 20 Cl -0.010 7.010 21 C -0.314 4.314 22 C -0.039 4.039 23 N -0.191 5.191 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.247 0.753 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.112 0.888 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.719 -11.286 0.883 12.683 hybrid contribution 1.049 0.082 -0.389 1.122 sum 6.769 -11.204 0.494 13.099 Atomic orbital electron populations 1.70120 1.07167 1.27918 1.28385 1.26056 0.94905 1.01028 0.93619 0.86399 0.80109 0.80490 0.79907 1.18920 1.20175 1.18919 1.19574 0.94210 0.89333 1.43040 0.89874 1.18499 0.88295 0.91504 0.88574 1.21698 0.98322 0.92050 1.13471 1.18202 0.93214 0.89154 1.01144 1.18926 0.97059 0.95490 0.91537 1.17982 0.96025 0.92868 0.85602 1.91536 1.73450 1.91898 1.52721 1.18356 0.99714 0.88702 0.90709 1.84883 1.56813 1.56646 1.31310 1.21140 0.99097 1.00500 0.92893 1.20887 1.00358 0.92123 0.99415 1.20843 0.99726 0.92795 0.90545 1.98404 1.96505 1.64379 1.41761 1.21206 0.92713 0.98158 1.19279 1.22427 0.98848 0.88409 0.94203 1.68729 1.07221 1.26726 1.16430 0.91511 0.88185 0.75311 0.83822 0.83992 0.88834 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.00 11.46 55.55 0.64 -18.37 16 2 C 0.07 1.76 5.50 -17.34 -0.10 1.66 16 3 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.43 -11.44 9.14 -37.69 -0.34 -11.78 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 C 0.26 6.95 6.55 -85.03 -0.56 6.40 16 10 C -0.23 -5.64 8.70 -38.34 -0.33 -5.97 16 11 C -0.01 -0.24 4.36 -104.65 -0.46 -0.70 16 12 C -0.03 -0.53 5.38 -104.83 -0.56 -1.09 16 13 C 0.10 1.65 7.26 -38.95 -0.28 1.37 16 14 F -0.12 -2.25 16.54 2.25 0.04 -2.22 16 15 C 0.07 0.97 6.70 -39.23 -0.26 0.71 16 16 O -0.49 -5.80 13.37 -19.70 -0.26 -6.06 16 17 C -0.12 -1.34 9.97 -39.39 -0.39 -1.73 16 18 C -0.11 -1.34 9.81 -39.60 -0.39 -1.73 16 19 C -0.01 -0.19 6.33 -39.15 -0.25 -0.44 16 20 Cl -0.04 -0.67 27.32 -51.86 -1.42 -2.08 16 21 C -0.29 -6.66 9.72 -38.81 -0.38 -7.04 16 22 C 0.13 3.10 11.17 -17.60 -0.20 2.90 16 23 N -0.48 -13.20 7.85 -11.21 -0.09 -13.29 16 24 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 25 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.39 2.71 9.06 45.56 0.41 3.12 16 27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -30.72 293.49 -7.44 -38.16 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -1.25 Total: 3.38 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -4.50 Total: -17.44 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.55 Total: -31.65 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.26 Total: -6.06 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.42 Total: -2.08 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.72 -7.44 -38.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244541324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.011 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds