Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86798 * 120.00429 * 2 1 4 4 H 1.48499 * 109.47358 * 240.00295 * 3 2 1 5 5 H 1.48506 * 109.46702 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47436 * 119.99846 * 3 2 1 7 7 C 1.40041 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99439 * 179.97438 * 7 2 1 9 9 C 1.41427 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.40454 * 119.77833 * 180.02562 * 9 7 2 11 11 C 1.39344 * 118.83230 * 179.72399 * 10 9 7 12 12 C 1.48330 * 120.82150 * 180.29065 * 11 10 9 13 13 C 1.39456 * 120.11740 * 245.22465 * 12 11 10 14 14 F 1.35101 * 120.10393 * 0.02562 * 13 12 11 15 15 C 1.38706 * 119.79416 * 180.02562 * 13 12 11 16 16 O 1.35987 * 119.99344 * 179.97438 * 15 13 12 17 17 C 1.38714 * 120.02307 * 0.02562 * 15 13 12 18 18 C 1.38276 * 120.23200 * 359.97438 * 17 15 13 19 19 C 1.38141 * 120.20713 * 359.72315 * 18 17 15 20 20 Cl 1.73604 * 120.00780 * 180.27309 * 19 18 17 21 21 C 1.40054 * 118.35433 * 0.50971 * 11 10 9 22 22 C 1.38489 * 119.41975 * 359.48394 * 21 11 10 23 23 N 1.31492 * 121.14950 * 0.25239 * 22 21 11 24 24 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.57926 * 359.96859 * 10 9 7 26 26 H 0.96705 * 113.99248 * 90.00082 * 16 15 13 27 27 H 1.08000 * 119.88564 * 180.02562 * 17 15 13 28 28 H 1.07991 * 119.89336 * 179.97438 * 18 17 15 29 29 H 1.08002 * 120.29307 * 179.76261 * 21 11 10 30 30 H 1.08003 * 119.42600 * 180.27859 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3003 -2.4376 0.0005 10 6 2.0072 -3.6513 0.0016 11 6 1.2906 -4.8463 0.0075 12 6 1.9923 -6.1532 0.0153 13 6 1.8789 -7.0148 -1.0753 14 9 1.1300 -6.6617 -2.1429 15 6 2.5375 -8.2355 -1.0607 16 8 2.4293 -9.0790 -2.1218 17 6 3.3055 -8.5966 0.0365 18 6 3.4186 -7.7430 1.1185 19 6 2.7719 -6.5224 1.1114 20 17 2.9232 -5.4517 2.4696 21 6 -0.1085 -4.7830 0.0011 22 6 -0.7335 -3.5471 0.0001 23 7 -0.0362 -2.4323 0.0001 24 1 -0.4849 0.8401 0.0004 25 1 3.0872 -3.6581 0.0020 26 1 3.1053 -8.9459 -2.8005 27 1 3.8177 -9.5474 0.0454 28 1 4.0176 -8.0299 1.9700 29 1 -0.6949 -5.6899 0.0015 30 1 -1.8124 -3.4982 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244541324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = -55.625126 kcal Electronic energy + Delta-G solvation = -20171.722396 eV Core-core repulsion = 16678.592447 eV Total energy + Delta-G solvation = -3493.129950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99883 -40.83661 -39.88451 -38.24429 -37.05711 -35.57493 -33.83021 -31.95643 -30.78359 -30.15737 -27.65300 -24.98825 -23.85708 -23.17637 -22.44466 -19.89830 -18.86732 -18.63611 -18.00877 -17.47333 -16.90505 -16.60008 -16.19398 -16.04473 -15.87865 -15.63206 -14.80774 -14.54500 -14.29911 -14.21542 -13.98856 -13.59150 -13.23719 -12.93601 -12.84462 -12.77393 -12.31800 -12.12224 -11.93687 -11.82634 -11.71531 -11.23226 -10.37820 -9.71844 -9.62465 -9.57963 -9.54047 -8.31445 -6.54323 -0.25658 -0.15472 0.86700 0.98145 1.06202 1.39879 1.52533 1.53480 2.19654 2.22528 2.78714 2.86855 3.22363 3.50323 3.76045 3.85874 4.04779 4.17460 4.33361 4.59178 4.63633 4.77452 4.82122 4.91844 4.95434 5.03261 5.18133 5.39590 5.45235 5.58854 5.73693 6.04379 6.23438 6.64206 6.69354 6.91501 8.14130 8.43718 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.004863 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.771206 B = 5756.449916 C = 6283.265235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.226 3.774 10 C -0.244 4.244 11 C 0.001 3.999 12 C -0.063 4.063 13 C 0.067 3.933 14 F -0.139 7.139 15 C 0.086 3.914 16 O -0.491 6.491 17 C -0.091 4.091 18 C -0.090 4.090 19 C -0.024 4.024 20 Cl -0.056 7.056 21 C -0.292 4.292 22 C 0.109 3.891 23 N -0.515 5.515 24 H 0.280 0.720 25 H 0.104 0.896 26 H 0.415 0.585 27 H 0.192 0.808 28 H 0.180 0.820 29 H 0.110 0.890 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 -14.376 0.729 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.101 3.899 10 C -0.267 4.267 11 C -0.006 4.006 12 C -0.065 4.065 13 C 0.047 3.953 14 F -0.118 7.118 15 C 0.040 3.960 16 O -0.304 6.304 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.051 4.051 20 Cl -0.027 7.027 21 C -0.315 4.315 22 C -0.055 4.055 23 N -0.228 5.228 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.275 0.725 27 H 0.209 0.791 28 H 0.198 0.802 29 H 0.128 0.872 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.734 -13.532 1.095 15.624 hybrid contribution 0.439 0.486 -0.500 0.824 sum 8.173 -13.045 0.596 15.405 Atomic orbital electron populations 1.70224 1.08922 1.29238 1.29363 1.26999 0.95723 1.04545 0.92458 0.85202 0.78643 0.75374 0.80133 1.18224 1.19195 1.18205 1.19949 0.94749 0.90327 1.44713 0.89281 1.18943 0.88736 0.92974 0.89248 1.21720 0.98491 0.92154 1.14325 1.18478 0.93124 0.90745 0.98228 1.18783 0.99417 0.94488 0.93827 1.18322 0.97486 0.94481 0.85002 1.91474 1.74332 1.92328 1.53630 1.18446 0.98455 0.87146 0.91937 1.84830 1.58300 1.55623 1.31697 1.21641 0.96989 1.01513 0.90761 1.21332 0.98745 0.90075 1.00643 1.21011 1.00421 0.94095 0.89540 1.98399 1.96595 1.65313 1.42375 1.21464 0.93578 0.98145 1.18300 1.22822 0.99833 0.88644 0.94239 1.68684 1.07821 1.28201 1.18107 0.90976 0.87785 0.72488 0.79062 0.80249 0.87171 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.64 11.46 21.84 0.25 -41.39 16 2 C 0.02 1.27 5.50 85.29 0.47 1.74 16 3 Si 0.99 38.58 29.56 68.60 2.03 40.61 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.47 -25.79 9.14 23.49 0.21 -25.58 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.23 12.85 6.55 40.19 0.26 13.12 16 10 C -0.24 -12.32 8.70 23.08 0.20 -12.12 16 11 C 0.00 0.03 4.36 -19.88 -0.09 -0.05 16 12 C -0.06 -2.34 5.38 -20.00 -0.11 -2.45 16 13 C 0.07 2.25 7.26 22.68 0.16 2.41 16 14 F -0.14 -5.35 16.54 44.97 0.74 -4.60 16 15 C 0.09 2.07 6.70 22.50 0.15 2.22 16 16 O -0.49 -9.82 13.37 -93.40 -1.25 -11.07 16 17 C -0.09 -1.57 9.97 22.39 0.22 -1.35 16 18 C -0.09 -1.80 9.81 22.26 0.22 -1.59 16 19 C -0.02 -0.72 6.33 22.55 0.14 -0.57 16 20 Cl -0.06 -1.84 27.32 -2.72 -0.07 -1.92 16 21 C -0.29 -13.75 9.72 22.77 0.22 -13.52 16 22 C 0.11 5.53 11.17 84.80 0.95 6.48 16 23 N -0.51 -29.75 7.85 -189.37 -1.49 -31.23 16 24 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 25 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 26 H 0.42 4.12 9.06 -74.05 -0.67 3.45 16 27 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 28 H 0.18 2.32 8.06 -2.92 -0.02 2.30 16 29 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.14 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -70.92 293.49 3.78 -67.14 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.54 Total: 13.72 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.02 Total: -31.26 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.24 Total: -72.63 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.25 Total: -11.07 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.74 Total: -4.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.92 kcal Total: -70.92 3.78 -67.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244541324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.516 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds