Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48500 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46866 * 120.00079 * 3 2 1 6 6 H 1.48497 * 109.47307 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99877 * 179.72796 * 2 1 3 8 8 H 1.08002 * 119.99648 * 153.01631 * 7 2 1 9 9 C 1.41366 * 120.00079 * 333.01637 * 7 2 1 10 10 C 1.40710 * 119.76332 * 163.62710 * 9 7 2 11 11 C 1.38273 * 119.18894 * 179.76909 * 10 9 7 12 12 C 1.38701 * 118.69352 * 0.50526 * 11 10 9 13 13 C 1.39903 * 119.46529 * 359.74368 * 12 11 10 14 14 C 1.48242 * 119.60960 * 180.02562 * 13 12 11 15 15 C 1.39470 * 120.10922 * 354.48301 * 14 13 12 16 16 C 1.37942 * 120.01015 * 179.72617 * 15 14 13 17 17 C 1.38447 * 120.21839 * 0.55148 * 16 15 14 18 18 Cl 1.73600 * 119.89660 * 179.70197 * 17 16 15 19 19 C 1.38784 * 120.20870 * 359.72618 * 17 16 15 20 20 O 1.35983 * 120.00614 * 179.97438 * 19 17 16 21 21 C 1.38710 * 119.98608 * 359.97438 * 19 17 16 22 22 F 1.35105 * 120.10589 * 179.97438 * 21 19 17 23 23 N 1.32264 * 120.77857 * 359.97438 * 13 12 11 24 24 H 0.97007 * 120.00374 * 176.10424 * 1 2 3 25 25 H 1.08002 * 120.40616 * 0.03626 * 10 9 7 26 26 H 1.08003 * 120.65207 * 180.22741 * 11 10 9 27 27 H 1.08004 * 120.26826 * 179.72318 * 12 11 10 28 28 H 1.08001 * 119.99388 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.89227 * 180.25545 * 16 15 14 30 30 H 0.96707 * 113.99481 * 270.01472 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2126 0.0058 8 1 2.9993 -1.2655 -0.4184 9 6 1.4161 -2.3676 0.5667 10 6 1.9483 -3.6370 0.2745 11 6 1.3634 -4.7583 0.8335 12 6 0.2607 -4.5931 1.6584 13 6 -0.2259 -3.3053 1.9072 14 6 -1.4039 -3.1250 2.7888 15 6 -2.0920 -4.2372 3.2732 16 6 -3.1846 -4.0672 4.0980 17 6 -3.6090 -2.7942 4.4388 18 17 -4.9896 -2.5898 5.4712 19 6 -2.9345 -1.6810 3.9573 20 8 -3.3553 -0.4326 4.2942 21 6 -1.8311 -1.8421 3.1323 22 9 -1.1730 -0.7600 2.6618 23 7 0.3534 -2.2466 1.3659 24 1 -0.4851 -0.8381 -0.0571 25 1 2.8057 -3.7339 -0.3750 26 1 1.7548 -5.7438 0.6282 27 1 -0.2187 -5.4518 2.1049 28 1 -1.7670 -5.2318 3.0058 29 1 -3.7135 -4.9299 4.4754 30 1 -4.0048 -0.0583 3.6833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244628782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = -43.200715 kcal Electronic energy + Delta-G solvation = -20550.422759 eV Core-core repulsion = 17057.831572 eV Total energy + Delta-G solvation = -3492.591187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.06782 -39.52782 -38.41743 -36.65743 -36.39636 -33.91819 -31.77356 -30.58601 -29.60766 -28.65329 -25.49456 -23.53121 -22.72645 -21.19633 -20.82500 -18.56754 -17.79101 -17.14073 -16.60431 -15.73129 -15.21542 -14.93172 -14.73655 -14.52982 -14.07785 -13.96863 -13.25693 -13.00297 -12.90899 -12.65726 -12.34037 -11.99159 -11.74302 -11.62590 -11.24315 -11.03724 -10.98201 -10.76221 -10.52330 -10.38062 -9.93369 -9.17741 -8.94713 -8.49858 -8.38631 -8.07566 -7.51071 -7.09566 -4.64685 0.83607 1.20506 2.05268 2.57987 2.74641 3.16413 3.25303 3.38447 3.64811 4.01927 4.03286 4.62582 4.67610 4.85159 4.96139 5.13739 5.50281 5.57249 5.77953 5.93543 5.99416 6.11933 6.25817 6.34653 6.52480 6.72080 6.74677 6.98684 7.31578 7.47382 7.61904 7.67751 7.77627 7.95039 8.55807 8.69539 9.65082 10.09144 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.005690 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.332653 B = 4920.065443 C = 6324.398381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.040 3.960 3 Si 1.066 2.934 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.486 4.486 8 H 0.083 0.917 9 C 0.245 3.755 10 C -0.268 4.268 11 C -0.050 4.050 12 C -0.306 4.306 13 C 0.183 3.817 14 C -0.041 4.041 15 C -0.077 4.077 16 C -0.119 4.119 17 C -0.042 4.042 18 Cl -0.060 7.060 19 C 0.066 3.934 20 O -0.476 6.476 21 C 0.126 3.874 22 F -0.083 7.083 23 N -0.529 5.529 24 H 0.306 0.694 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -4.429 5.431 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.189 4.189 3 Si 0.890 3.110 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.122 3.878 10 C -0.291 4.291 11 C -0.074 4.074 12 C -0.330 4.330 13 C 0.039 3.961 14 C -0.043 4.043 15 C -0.096 4.096 16 C -0.138 4.138 17 C -0.069 4.069 18 Cl -0.031 7.031 19 C 0.019 3.981 20 O -0.286 6.286 21 C 0.104 3.896 22 F -0.060 7.060 23 N -0.244 5.244 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.504 -1.931 6.107 9.866 hybrid contribution 0.223 -2.432 -0.532 2.499 sum -7.281 -4.363 5.575 10.156 Atomic orbital electron populations 1.70222 1.08324 1.35165 1.22052 1.26959 0.95753 1.03964 0.92240 0.83619 0.75683 0.73906 0.77794 1.19718 1.20008 1.20276 1.20553 1.03597 0.93964 1.33483 0.89859 1.18472 0.88120 0.92157 0.89022 1.21774 1.05535 0.93487 1.08261 1.20817 0.94548 0.97160 0.94869 1.20995 1.04297 0.95824 1.11855 1.19205 0.92311 0.90487 0.94110 1.19060 0.96094 0.91069 0.98076 1.21116 0.93833 0.98898 0.95779 1.20825 0.98045 0.95106 0.99798 1.21090 0.92482 0.94033 0.99342 1.98350 1.41152 1.97811 1.65808 1.18026 0.95469 0.85117 0.99505 1.84896 1.63536 1.27000 1.53144 1.18064 0.92164 0.84763 0.94615 1.91743 1.78211 1.50880 1.85179 1.68344 1.12951 1.29988 1.13108 0.87889 0.87987 0.88072 0.87993 0.83605 0.84160 0.75376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.91 13.03 55.55 0.72 -19.19 16 2 C 0.04 1.04 5.22 -17.35 -0.09 0.94 16 3 Si 1.07 21.83 30.01 -169.99 -5.10 16.73 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.49 -12.87 9.01 -37.73 -0.34 -13.21 16 8 H 0.08 2.08 7.98 -52.49 -0.42 1.66 16 9 C 0.25 6.55 6.16 -85.01 -0.52 6.03 16 10 C -0.27 -6.41 9.83 -38.64 -0.38 -6.79 16 11 C -0.05 -1.07 10.15 -39.40 -0.40 -1.47 16 12 C -0.31 -6.44 9.47 -38.79 -0.37 -6.81 16 13 C 0.18 4.24 6.73 -82.95 -0.56 3.69 16 14 C -0.04 -0.81 5.88 -104.85 -0.62 -1.43 16 15 C -0.08 -1.17 9.41 -39.23 -0.37 -1.54 16 16 C -0.12 -1.58 9.81 -39.61 -0.39 -1.97 16 17 C -0.04 -0.61 6.33 -39.30 -0.25 -0.86 16 18 Cl -0.06 -0.76 28.48 -51.86 -1.48 -2.23 16 19 C 0.07 1.12 6.70 -39.21 -0.26 0.85 16 20 O -0.48 -7.47 12.81 -19.69 -0.25 -7.72 16 21 C 0.13 2.55 7.28 -38.93 -0.28 2.27 16 22 F -0.08 -1.99 15.10 2.25 0.03 -1.95 16 23 N -0.53 -13.97 5.83 -7.69 -0.04 -14.02 16 24 H 0.31 8.62 6.76 -40.82 -0.28 8.34 16 25 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 26 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.10 1.78 6.21 -52.48 -0.33 1.46 16 28 H 0.15 1.90 6.20 -52.49 -0.33 1.58 16 29 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.39 4.42 9.06 45.56 0.41 4.83 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -29.81 288.94 -7.59 -37.39 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -1.00 Total: 6.93 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -4.83 Total: -20.30 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.68 Total: -33.20 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.25 Total: -7.72 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.10 Total: 16.73 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.81 -7.59 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244628782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.806 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds