Wall clock time and date at job start Tue Mar 31 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48500 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46866 * 120.00079 * 3 2 1 6 6 H 1.48497 * 109.47307 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99877 * 179.72796 * 2 1 3 8 8 H 1.08002 * 119.99648 * 153.01631 * 7 2 1 9 9 C 1.41366 * 120.00079 * 333.01637 * 7 2 1 10 10 C 1.40710 * 119.76332 * 163.62710 * 9 7 2 11 11 C 1.38273 * 119.18894 * 179.76909 * 10 9 7 12 12 C 1.38701 * 118.69352 * 0.50526 * 11 10 9 13 13 C 1.39903 * 119.46529 * 359.74368 * 12 11 10 14 14 C 1.48242 * 119.60960 * 180.02562 * 13 12 11 15 15 C 1.39470 * 120.10922 * 354.48301 * 14 13 12 16 16 C 1.37942 * 120.01015 * 179.72617 * 15 14 13 17 17 C 1.38447 * 120.21839 * 0.55148 * 16 15 14 18 18 Cl 1.73600 * 119.89660 * 179.70197 * 17 16 15 19 19 C 1.38784 * 120.20870 * 359.72618 * 17 16 15 20 20 O 1.35983 * 120.00614 * 179.97438 * 19 17 16 21 21 C 1.38710 * 119.98608 * 359.97438 * 19 17 16 22 22 F 1.35105 * 120.10589 * 179.97438 * 21 19 17 23 23 N 1.32264 * 120.77857 * 359.97438 * 13 12 11 24 24 H 0.97007 * 120.00374 * 176.10424 * 1 2 3 25 25 H 1.08002 * 120.40616 * 0.03626 * 10 9 7 26 26 H 1.08003 * 120.65207 * 180.22741 * 11 10 9 27 27 H 1.08004 * 120.26826 * 179.72318 * 12 11 10 28 28 H 1.08001 * 119.99388 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.89227 * 180.25545 * 16 15 14 30 30 H 0.96707 * 113.99481 * 270.01472 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2126 0.0058 8 1 2.9993 -1.2655 -0.4184 9 6 1.4161 -2.3676 0.5667 10 6 1.9483 -3.6370 0.2745 11 6 1.3634 -4.7583 0.8335 12 6 0.2607 -4.5931 1.6584 13 6 -0.2259 -3.3053 1.9072 14 6 -1.4039 -3.1250 2.7888 15 6 -2.0920 -4.2372 3.2732 16 6 -3.1846 -4.0672 4.0980 17 6 -3.6090 -2.7942 4.4388 18 17 -4.9896 -2.5898 5.4712 19 6 -2.9345 -1.6810 3.9573 20 8 -3.3553 -0.4326 4.2942 21 6 -1.8311 -1.8421 3.1323 22 9 -1.1730 -0.7600 2.6618 23 7 0.3534 -2.2466 1.3659 24 1 -0.4851 -0.8381 -0.0571 25 1 2.8057 -3.7339 -0.3750 26 1 1.7548 -5.7438 0.6282 27 1 -0.2187 -5.4518 2.1049 28 1 -1.7670 -5.2318 3.0058 29 1 -3.7135 -4.9299 4.4754 30 1 -4.0048 -0.0583 3.6833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244628782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:24 Heat of formation + Delta-G solvation = -61.705187 kcal Electronic energy + Delta-G solvation = -20551.225173 eV Core-core repulsion = 17057.831572 eV Total energy + Delta-G solvation = -3493.393601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.66716 -40.91039 -40.05667 -37.93306 -37.55005 -35.73147 -33.34530 -32.33677 -30.93255 -30.22802 -27.30661 -25.01097 -24.17842 -22.86570 -22.38147 -20.15670 -19.35139 -18.48230 -18.03803 -17.14436 -16.80336 -16.56562 -16.27568 -16.10398 -15.68916 -15.42578 -14.77872 -14.56871 -14.48923 -14.01673 -13.86057 -13.64990 -13.28842 -13.04717 -12.83470 -12.41988 -12.34173 -12.18545 -12.00687 -11.84278 -11.62977 -10.92220 -10.57404 -10.14695 -9.90256 -9.77923 -9.18188 -8.98445 -6.59673 -0.52016 -0.07316 0.88172 0.90443 1.01569 1.48911 1.62548 1.78242 2.27341 2.33782 2.77348 2.81234 3.37081 3.39003 3.70878 3.72371 3.93337 4.22933 4.30120 4.53774 4.63764 4.70751 4.76713 4.90313 4.98127 5.14311 5.21976 5.51141 5.54056 5.69948 5.76762 5.85804 6.12412 6.50199 6.67880 6.81210 7.84014 8.10287 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.005690 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.332653 B = 4920.065443 C = 6324.398381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.006 3.994 3 Si 1.116 2.884 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.218 3.782 10 C -0.294 4.294 11 C -0.047 4.047 12 C -0.292 4.292 13 C 0.158 3.842 14 C -0.071 4.071 15 C -0.063 4.063 16 C -0.095 4.095 17 C -0.037 4.037 18 Cl -0.035 7.035 19 C 0.067 3.933 20 O -0.487 6.487 21 C 0.083 3.917 22 F -0.119 7.119 23 N -0.560 5.560 24 H 0.287 0.713 25 H 0.109 0.891 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.177 0.823 29 H 0.187 0.813 30 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 -6.934 6.973 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.563 4.563 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.317 4.317 11 C -0.070 4.070 12 C -0.315 4.315 13 C 0.016 3.984 14 C -0.073 4.073 15 C -0.081 4.081 16 C -0.113 4.113 17 C -0.065 4.065 18 Cl -0.006 7.006 19 C 0.020 3.980 20 O -0.299 6.299 21 C 0.062 3.938 22 F -0.097 7.097 23 N -0.276 5.276 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.194 0.806 29 H 0.204 0.796 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.869 -4.468 7.647 12.534 hybrid contribution 0.445 -1.902 -0.828 2.122 sum -8.424 -6.371 6.818 12.571 Atomic orbital electron populations 1.70329 1.09100 1.33779 1.25363 1.28331 0.95776 1.07087 0.90544 0.83036 0.74792 0.69965 0.78879 1.19770 1.19768 1.17379 1.20757 1.04195 0.95204 1.36138 0.89839 1.18914 0.88810 0.93470 0.89403 1.21980 1.06488 0.93684 1.09511 1.21321 0.93984 0.98191 0.93540 1.21572 1.03351 0.96418 1.10113 1.19951 0.93345 0.90922 0.94225 1.19196 0.96377 0.92409 0.99302 1.21420 0.93378 0.98540 0.94811 1.21308 0.96635 0.95837 0.97532 1.21243 0.92678 0.93806 0.98731 1.98368 1.39561 1.97812 1.64830 1.18053 0.94809 0.86239 0.98927 1.84836 1.64254 1.27053 1.53731 1.18562 0.93946 0.84379 0.96926 1.91642 1.79351 1.52567 1.86152 1.68344 1.13348 1.32098 1.13771 0.89968 0.87333 0.83744 0.83387 0.80612 0.79572 0.73393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.04 13.03 21.84 0.28 -43.76 16 2 C 0.01 0.32 5.22 85.29 0.45 0.76 16 3 Si 1.12 45.87 30.01 68.60 2.06 47.92 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.53 -29.85 9.01 23.47 0.21 -29.64 16 8 H 0.08 4.43 7.98 -2.91 -0.02 4.41 16 9 C 0.22 12.20 6.16 40.26 0.25 12.45 16 10 C -0.29 -14.30 9.83 22.88 0.22 -14.07 16 11 C -0.05 -1.90 10.15 22.39 0.23 -1.67 16 12 C -0.29 -11.58 9.47 22.78 0.22 -11.36 16 13 C 0.16 7.37 6.73 42.14 0.28 7.66 16 14 C -0.07 -2.77 5.88 -20.01 -0.12 -2.88 16 15 C -0.06 -1.68 9.41 22.50 0.21 -1.47 16 16 C -0.09 -2.07 9.81 22.25 0.22 -1.85 16 17 C -0.04 -0.96 6.33 22.45 0.14 -0.82 16 18 Cl -0.03 -0.76 28.48 -2.72 -0.08 -0.83 16 19 C 0.07 2.22 6.70 22.51 0.15 2.37 16 20 O -0.49 -15.16 12.81 -93.35 -1.20 -16.36 16 21 C 0.08 3.46 7.28 22.69 0.17 3.63 16 22 F -0.12 -6.13 15.10 44.97 0.68 -5.45 16 23 N -0.56 -30.94 5.83 -178.24 -1.04 -31.98 16 24 H 0.29 17.43 6.76 -92.70 -0.63 16.80 16 25 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 26 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.15 4.39 6.21 -2.91 -0.02 4.38 16 28 H 0.18 3.56 6.20 -2.91 -0.02 3.54 16 29 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.41 9.18 9.06 -74.05 -0.67 8.50 16 Total: -1.00 -70.85 288.94 4.03 -66.82 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.69 Total: 20.53 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.63 Total: -36.90 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -0.75 Total: -75.74 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.20 Total: -16.36 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.68 Total: -5.45 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.06 Total: 47.92 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.83 kcal Total: -70.85 4.03 -66.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244628782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.116 kcal (2) G-P(sol) polarization free energy of solvation -70.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds