Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48501 * 109.46904 * 240.00234 * 3 2 1 5 5 H 1.48498 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47081 * 120.00277 * 3 2 1 7 7 C 1.40008 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99445 * 197.63786 * 7 2 1 9 9 C 1.41030 * 120.00385 * 17.63122 * 7 2 1 10 10 C 1.41327 * 120.54775 * 23.72406 * 9 7 2 11 11 C 1.36568 * 118.42017 * 179.97438 * 10 9 7 12 12 C 1.39950 * 119.46341 * 359.97438 * 11 10 9 13 13 C 1.47874 * 119.45355 * 180.02562 * 12 11 10 14 14 C 1.39711 * 120.12465 * 0.02562 * 13 12 11 15 15 C 1.37861 * 119.98704 * 179.70181 * 14 13 12 16 16 C 1.38525 * 120.23712 * 0.25460 * 15 14 13 17 17 Cl 1.73600 * 119.87084 * 180.02562 * 16 15 14 18 18 C 1.38830 * 120.25394 * 0.02562 * 16 15 14 19 19 O 1.35992 * 119.99375 * 180.02562 * 18 16 15 20 20 C 1.38645 * 120.00972 * 359.97438 * 18 16 15 21 21 F 1.35103 * 120.12088 * 179.97438 * 20 18 16 22 22 N 1.33049 * 121.09093 * 0.27684 * 12 11 10 23 23 C 1.31258 * 121.71881 * 359.43520 * 22 12 11 24 24 H 0.97002 * 120.00465 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.79129 * 359.95498 * 10 9 7 26 26 H 1.08000 * 120.27180 * 179.97438 * 11 10 9 27 27 H 1.08004 * 120.00757 * 359.97283 * 14 13 12 28 28 H 1.07997 * 119.88017 * 180.27085 * 15 14 13 29 29 H 0.96697 * 114.00230 * 89.99558 * 19 18 16 30 30 H 1.08006 * 119.79930 * 180.26223 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0957 1.6963 -1.2125 5 1 1.2770 2.7464 0.0006 6 1 3.0958 1.6963 1.2124 7 6 2.0079 -1.2125 -0.0005 8 1 3.0498 -1.2346 0.2829 9 6 1.3525 -2.4051 -0.3710 10 6 0.2048 -2.3678 -1.1948 11 6 -0.3953 -3.5487 -1.5273 12 6 0.1380 -4.7506 -1.0482 13 6 -0.5116 -6.0292 -1.4088 14 6 -1.6478 -6.0336 -2.2217 15 6 -2.2475 -7.2276 -2.5612 16 6 -1.7307 -8.4252 -2.0947 17 17 -2.4931 -9.9233 -2.5286 18 6 -0.6055 -8.4320 -1.2816 19 8 -0.1023 -9.6108 -0.8270 20 6 0.0059 -7.2373 -0.9337 21 9 1.1007 -7.2412 -0.1421 22 7 1.2168 -4.7616 -0.2696 23 6 1.8320 -3.6539 0.0730 24 1 -0.4851 0.8400 0.0004 25 1 -0.1886 -1.4278 -1.5527 26 1 -1.2742 -3.5550 -2.1549 27 1 -2.0537 -5.1021 -2.5877 28 1 -3.1232 -7.2293 -3.1932 29 1 0.5593 -10.0071 -1.4103 30 1 2.7079 -3.6992 0.7032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244630735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = -60.540564 kcal Electronic energy + Delta-G solvation = -19865.395572 eV Core-core repulsion = 16372.052473 eV Total energy + Delta-G solvation = -3493.343099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.64146 -40.81311 -40.00253 -37.84818 -37.44526 -36.08064 -33.05043 -32.67693 -30.94524 -30.39822 -27.38240 -24.53760 -24.39553 -22.84136 -22.40487 -19.61615 -19.41092 -18.43769 -17.98176 -17.40386 -17.11508 -16.56534 -16.22745 -16.03075 -15.71783 -15.38320 -14.70328 -14.49022 -14.47572 -13.86447 -13.85591 -13.57987 -13.33066 -13.22167 -12.86185 -12.80410 -12.36277 -12.22467 -12.06883 -11.83543 -11.63193 -11.27177 -10.31731 -10.24955 -9.95825 -9.71573 -9.10253 -8.80172 -6.49569 -0.37477 0.01601 0.82837 1.01730 1.08399 1.38962 1.50407 1.54449 2.13731 2.31395 2.74040 2.86555 3.45758 3.57264 3.68534 3.83190 4.02131 4.25063 4.40589 4.57715 4.68299 4.79756 4.95894 4.97770 5.05145 5.07690 5.26091 5.32349 5.55650 5.76679 5.85278 5.93863 6.38698 6.58615 6.59722 6.67496 7.62987 8.08439 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.040702 B = 0.003496 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.764544 B = 8007.140372 C = 8618.404372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.456 4.456 8 H 0.092 0.908 9 C 0.046 3.954 10 C -0.164 4.164 11 C -0.112 4.112 12 C -0.034 4.034 13 C -0.021 4.021 14 C -0.098 4.098 15 C -0.084 4.084 16 C -0.062 4.062 17 Cl -0.042 7.042 18 C 0.084 3.916 19 O -0.487 6.487 20 C 0.058 3.942 21 F -0.129 7.129 22 N -0.454 5.454 23 C -0.041 4.041 24 H 0.299 0.701 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.164 0.836 28 H 0.178 0.822 29 H 0.408 0.592 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -7.897 -7.126 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.484 4.484 8 H 0.110 0.890 9 C 0.042 3.958 10 C -0.189 4.189 11 C -0.132 4.132 12 C -0.168 4.168 13 C -0.023 4.023 14 C -0.117 4.117 15 C -0.102 4.102 16 C -0.089 4.089 17 Cl -0.013 7.013 18 C 0.037 3.963 19 O -0.299 6.299 20 C 0.037 3.963 21 F -0.107 7.107 22 N -0.161 5.161 23 C -0.206 4.206 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.158 0.842 27 H 0.181 0.819 28 H 0.195 0.805 29 H 0.267 0.733 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.213 -8.604 -6.356 11.900 hybrid contribution 0.763 1.239 -0.100 1.458 sum -4.450 -7.366 -6.456 10.758 Atomic orbital electron populations 1.69790 1.09284 1.31998 1.30991 1.26973 0.95591 1.05018 0.90733 0.85076 0.78776 0.74576 0.80404 1.18113 1.18751 1.18165 1.20017 0.98884 0.91825 1.37653 0.88975 1.18950 0.92805 0.94223 0.89871 1.21399 0.99174 0.97666 1.00638 1.21567 0.99808 0.92125 0.99714 1.19102 0.98357 0.91817 1.07544 1.18969 0.95882 0.90008 0.97407 1.21299 0.93392 0.99893 0.97080 1.21197 1.00878 0.88517 0.99613 1.21107 0.96850 0.89445 1.01539 1.98354 1.79930 1.31469 1.91581 1.17951 0.95168 0.84750 0.98468 1.84828 1.61342 1.32975 1.50771 1.18236 0.87478 0.93475 0.97089 1.91495 1.50911 1.97105 1.71209 1.67116 1.07123 1.32240 1.09629 1.22624 1.03523 0.87976 1.06456 0.88920 0.85753 0.84183 0.81880 0.80455 0.73270 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.13 10.92 21.84 0.24 -36.90 16 2 C 0.04 1.63 5.17 85.28 0.44 2.07 16 3 Si 0.99 33.60 29.60 68.60 2.03 35.63 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 6 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 7 C -0.46 -22.47 9.06 23.38 0.21 -22.25 16 8 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 9 C 0.05 2.40 5.59 -21.17 -0.12 2.28 16 10 C -0.16 -8.02 8.74 22.64 0.20 -7.83 16 11 C -0.11 -4.92 9.38 22.29 0.21 -4.71 16 12 C -0.03 -1.59 6.74 41.93 0.28 -1.30 16 13 C -0.02 -0.79 5.88 -20.01 -0.12 -0.91 16 14 C -0.10 -2.77 9.41 22.54 0.21 -2.56 16 15 C -0.08 -1.93 9.80 22.25 0.22 -1.72 16 16 C -0.06 -1.60 6.34 22.48 0.14 -1.45 16 17 Cl -0.04 -0.92 28.48 -2.72 -0.08 -0.99 16 18 C 0.08 2.59 6.70 22.51 0.15 2.74 16 19 O -0.49 -13.48 12.81 -93.46 -1.20 -14.68 16 20 C 0.06 2.24 7.29 22.73 0.17 2.40 16 21 F -0.13 -5.69 15.13 44.97 0.68 -5.01 16 22 N -0.45 -23.13 8.28 -182.74 -1.51 -24.65 16 23 C -0.04 -2.08 10.97 85.44 0.94 -1.14 16 24 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 25 H 0.12 6.08 6.19 -2.91 -0.02 6.06 16 26 H 0.14 4.89 6.15 -2.91 -0.02 4.87 16 27 H 0.16 3.87 6.15 -2.91 -0.02 3.85 16 28 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.41 7.41 9.06 -74.06 -0.67 6.74 16 30 H 0.13 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -61.45 287.48 3.65 -57.80 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.56 Total: 23.18 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.93 Total: -34.38 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.28 Total: -61.54 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.20 Total: -14.68 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.68 Total: -5.01 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -0.99 kcal Total: -61.45 3.65 -57.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244630735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.745 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds