Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86792 * 120.00205 * 2 1 4 4 H 1.48507 * 109.47091 * 270.36915 * 3 2 1 5 5 H 1.48498 * 109.47418 * 30.37060 * 3 2 1 6 6 H 1.48497 * 109.47264 * 150.37073 * 3 2 1 7 7 C 1.40055 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00233 * 343.01303 * 7 2 1 9 9 C 1.40861 * 119.99907 * 163.00679 * 7 2 1 10 10 C 1.41110 * 120.72265 * 330.73601 * 9 7 2 11 11 C 1.36884 * 118.39967 * 179.72454 * 10 9 7 12 12 C 1.38867 * 119.81078 * 0.27172 * 11 10 9 13 13 N 1.31743 * 121.51244 * 359.97438 * 12 11 10 14 14 C 1.32625 * 121.71109 * 0.02562 * 13 12 11 15 15 C 1.47718 * 119.99618 * 179.97438 * 14 13 12 16 16 C 1.39778 * 120.13472 * 130.35508 * 15 14 13 17 17 C 1.37830 * 119.98145 * 180.02562 * 16 15 14 18 18 C 1.38539 * 120.24891 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.86749 * 180.02562 * 18 17 16 20 20 C 1.38840 * 120.26611 * 359.97438 * 18 17 16 21 21 O 1.35988 * 119.99437 * 180.02562 * 20 18 17 22 22 C 1.38641 * 120.01245 * 359.76733 * 20 18 17 23 23 F 1.35102 * 120.12217 * 180.25439 * 22 20 18 24 24 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.80069 * 359.97438 * 10 9 7 26 26 H 1.08005 * 120.09617 * 180.30091 * 11 10 9 27 27 H 1.08001 * 119.24616 * 180.02562 * 12 11 10 28 28 H 1.08003 * 120.00848 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.87357 * 180.02562 * 17 16 15 30 30 H 0.96696 * 113.99738 * 90.00414 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.4816 2.0508 -1.4001 5 1 1.4434 2.6503 0.7078 6 1 3.5433 1.4378 0.6922 7 6 2.0081 -1.2129 0.0005 8 1 1.5034 -2.1277 0.2742 9 6 3.3706 -1.2398 -0.3560 10 6 3.8978 -0.2938 -1.2606 11 6 5.2297 -0.3602 -1.5693 12 6 6.0224 -1.3471 -0.9982 13 7 5.5234 -2.2306 -0.1580 14 6 4.2418 -2.2219 0.1831 15 6 3.7222 -3.2312 1.1283 16 6 2.9523 -2.8344 2.2254 17 6 2.4696 -3.7788 3.1057 18 6 2.7439 -5.1222 2.9077 19 17 2.1304 -6.3033 4.0223 20 6 3.5067 -5.5279 1.8208 21 8 3.7722 -6.8481 1.6315 22 6 3.9933 -4.5877 0.9256 23 9 4.7315 -4.9805 -0.1356 24 1 -0.4850 0.8401 -0.0004 25 1 3.2666 0.4668 -1.6957 26 1 5.6630 0.3532 -2.2548 27 1 7.0723 -1.3908 -1.2479 28 1 2.7364 -1.7881 2.3837 29 1 1.8745 -3.4703 3.9525 30 1 3.1154 -7.3077 1.0908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244631396.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -45.261283 kcal Electronic energy + Delta-G solvation = -20588.457962 eV Core-core repulsion = 17095.777422 eV Total energy + Delta-G solvation = -3492.680540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.27216 -39.44313 -38.57719 -36.50875 -36.18309 -34.25041 -31.83703 -31.53199 -29.48841 -28.69291 -25.80112 -23.37779 -22.51330 -21.70812 -20.74858 -18.28949 -17.74626 -17.05922 -16.57807 -16.23821 -15.72763 -15.03628 -14.89580 -14.59597 -14.18758 -13.84628 -13.49377 -13.20103 -12.79189 -12.64629 -12.59219 -12.33676 -11.94246 -11.58366 -11.56830 -11.09591 -10.90868 -10.84519 -10.55892 -10.37855 -10.09040 -9.70638 -8.82376 -8.48698 -8.33771 -8.26853 -7.68881 -7.30181 -4.82688 1.15278 1.40872 2.22587 2.25739 2.49223 2.86838 2.98005 3.07171 3.67700 3.73747 4.14153 4.29774 4.75725 5.05573 5.11760 5.30589 5.42871 5.74103 5.84726 5.92166 6.02063 6.17693 6.24141 6.40986 6.50879 6.64870 6.73213 6.86963 7.00438 7.24254 7.35108 7.57620 7.69594 7.95307 8.18882 8.36974 9.20317 9.68536 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.006196 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.247222 B = 4518.124463 C = 5691.563540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.421 4.421 8 H 0.102 0.898 9 C 0.067 3.933 10 C -0.208 4.208 11 C -0.114 4.114 12 C -0.036 4.036 13 N -0.431 5.431 14 C 0.016 3.984 15 C 0.010 3.990 16 C -0.059 4.059 17 C -0.112 4.112 18 C -0.051 4.051 19 Cl -0.066 7.066 20 C 0.070 3.930 21 O -0.480 6.480 22 C 0.095 3.905 23 F -0.120 7.120 24 H 0.292 0.708 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -3.596 3.608 5.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.140 4.140 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.168 1.168 7 C -0.448 4.448 8 H 0.120 0.880 9 C 0.062 3.938 10 C -0.234 4.234 11 C -0.134 4.134 12 C -0.196 4.196 13 N -0.138 5.138 14 C -0.123 4.123 15 C 0.008 3.992 16 C -0.078 4.078 17 C -0.131 4.131 18 C -0.078 4.078 19 Cl -0.037 7.037 20 C 0.023 3.977 21 O -0.289 6.289 22 C 0.074 3.926 23 F -0.098 7.098 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.147 0.853 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.751 -4.138 4.365 6.264 hybrid contribution -0.709 1.132 -0.991 1.663 sum 1.042 -3.005 3.375 4.638 Atomic orbital electron populations 1.69646 1.08134 1.31066 1.31492 1.26268 0.94825 1.01929 0.90933 0.86340 0.80946 0.79434 0.79574 1.19095 1.21175 1.16812 1.19529 0.92151 0.96384 1.36782 0.87988 1.18359 0.93748 0.91218 0.90521 1.21219 0.95757 1.03678 1.02715 1.21416 0.94713 0.98249 0.99043 1.21717 0.98975 0.96634 1.02292 1.67090 1.13749 1.22344 1.10570 1.19089 0.89339 1.00671 1.03234 1.18508 0.96400 0.89648 0.94618 1.21253 0.94582 1.00775 0.91183 1.20878 1.01411 0.89851 1.00954 1.21016 1.01604 0.90861 0.94347 1.98335 1.86243 1.58135 1.60986 1.17854 1.00901 0.84142 0.94792 1.84889 1.51974 1.17563 1.74440 1.18000 0.96744 0.91835 0.86043 1.91494 1.73951 1.91153 1.53244 0.89717 0.86770 0.87510 0.85335 0.83125 0.84302 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.29 13.93 55.55 0.77 -17.52 16 2 C 0.08 1.91 5.44 -17.31 -0.09 1.82 16 3 Si 0.91 18.41 24.53 -169.99 -4.17 14.24 16 4 H -0.26 -5.21 6.46 56.52 0.37 -4.84 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.24 -5.13 7.00 56.52 0.40 -4.74 16 7 C -0.42 -10.00 7.53 -37.91 -0.29 -10.29 16 8 H 0.10 2.54 6.92 -52.49 -0.36 2.17 16 9 C 0.07 1.57 5.13 -106.41 -0.55 1.03 16 10 C -0.21 -4.64 7.31 -38.98 -0.29 -4.92 16 11 C -0.11 -2.32 10.03 -39.84 -0.40 -2.72 16 12 C -0.04 -0.77 11.16 -17.36 -0.19 -0.96 16 13 N -0.43 -10.01 9.82 -9.18 -0.09 -10.10 16 14 C 0.02 0.38 6.12 -82.24 -0.50 -0.12 16 15 C 0.01 0.22 5.09 -104.86 -0.53 -0.32 16 16 C -0.06 -1.09 8.02 -39.16 -0.31 -1.40 16 17 C -0.11 -1.78 9.80 -39.62 -0.39 -2.17 16 18 C -0.05 -0.82 6.34 -39.25 -0.25 -1.07 16 19 Cl -0.07 -0.92 28.48 -51.86 -1.48 -2.39 16 20 C 0.07 1.21 6.70 -39.21 -0.26 0.95 16 21 O -0.48 -7.38 12.81 -19.70 -0.25 -7.63 16 22 C 0.09 1.90 7.26 -38.84 -0.28 1.62 16 23 F -0.12 -2.57 16.32 2.25 0.04 -2.54 16 24 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 25 H 0.11 2.46 4.51 -52.49 -0.24 2.22 16 26 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 27 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 28 H 0.15 2.77 7.25 -52.48 -0.38 2.39 16 29 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.39 4.19 9.06 45.56 0.41 4.61 16 LS Contribution 282.59 15.07 4.26 4.26 Total: -1.00 -26.79 282.59 -6.27 -33.06 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.01 Total: 7.19 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.34 Total: -18.56 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.68 Total: -27.62 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.25 Total: -7.63 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.17 Total: 14.24 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.79 -6.27 -33.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244631396.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.205 kcal (2) G-P(sol) polarization free energy of solvation -26.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds