Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86792 * 120.00205 * 2 1 4 4 H 1.48507 * 109.47091 * 270.36915 * 3 2 1 5 5 H 1.48498 * 109.47418 * 30.37060 * 3 2 1 6 6 H 1.48497 * 109.47264 * 150.37073 * 3 2 1 7 7 C 1.40055 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00233 * 343.01303 * 7 2 1 9 9 C 1.40861 * 119.99907 * 163.00679 * 7 2 1 10 10 C 1.41110 * 120.72265 * 330.73601 * 9 7 2 11 11 C 1.36884 * 118.39967 * 179.72454 * 10 9 7 12 12 C 1.38867 * 119.81078 * 0.27172 * 11 10 9 13 13 N 1.31743 * 121.51244 * 359.97438 * 12 11 10 14 14 C 1.32625 * 121.71109 * 0.02562 * 13 12 11 15 15 C 1.47718 * 119.99618 * 179.97438 * 14 13 12 16 16 C 1.39778 * 120.13472 * 130.35508 * 15 14 13 17 17 C 1.37830 * 119.98145 * 180.02562 * 16 15 14 18 18 C 1.38539 * 120.24891 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.86749 * 180.02562 * 18 17 16 20 20 C 1.38840 * 120.26611 * 359.97438 * 18 17 16 21 21 O 1.35988 * 119.99437 * 180.02562 * 20 18 17 22 22 C 1.38641 * 120.01245 * 359.76733 * 20 18 17 23 23 F 1.35102 * 120.12217 * 180.25439 * 22 20 18 24 24 H 0.97002 * 119.99623 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.80069 * 359.97438 * 10 9 7 26 26 H 1.08005 * 120.09617 * 180.30091 * 11 10 9 27 27 H 1.08001 * 119.24616 * 180.02562 * 12 11 10 28 28 H 1.08003 * 120.00848 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.87357 * 180.02562 * 17 16 15 30 30 H 0.96696 * 113.99738 * 90.00414 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.4816 2.0508 -1.4001 5 1 1.4434 2.6503 0.7078 6 1 3.5433 1.4378 0.6922 7 6 2.0081 -1.2129 0.0005 8 1 1.5034 -2.1277 0.2742 9 6 3.3706 -1.2398 -0.3560 10 6 3.8978 -0.2938 -1.2606 11 6 5.2297 -0.3602 -1.5693 12 6 6.0224 -1.3471 -0.9982 13 7 5.5234 -2.2306 -0.1580 14 6 4.2418 -2.2219 0.1831 15 6 3.7222 -3.2312 1.1283 16 6 2.9523 -2.8344 2.2254 17 6 2.4696 -3.7788 3.1057 18 6 2.7439 -5.1222 2.9077 19 17 2.1304 -6.3033 4.0223 20 6 3.5067 -5.5279 1.8208 21 8 3.7722 -6.8481 1.6315 22 6 3.9933 -4.5877 0.9256 23 9 4.7315 -4.9805 -0.1356 24 1 -0.4850 0.8401 -0.0004 25 1 3.2666 0.4668 -1.6957 26 1 5.6630 0.3532 -2.2548 27 1 7.0723 -1.3908 -1.2479 28 1 2.7364 -1.7881 2.3837 29 1 1.8745 -3.4703 3.9525 30 1 3.1154 -7.3077 1.0908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244631396.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -61.945736 kcal Electronic energy + Delta-G solvation = -20589.181454 eV Core-core repulsion = 17095.777422 eV Total energy + Delta-G solvation = -3493.404032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.84565 -40.94672 -40.09744 -37.81985 -37.45558 -35.96683 -33.40162 -33.22406 -30.91659 -30.20146 -27.49677 -24.93181 -23.99996 -23.29579 -22.31483 -19.65520 -19.48100 -18.51269 -18.07854 -17.78756 -17.25240 -16.61170 -16.43064 -16.10156 -15.61779 -15.40751 -15.09622 -14.70223 -14.43488 -14.21472 -13.95329 -13.87796 -13.44817 -13.25598 -12.96903 -12.67861 -12.33321 -12.19621 -12.02599 -11.81622 -11.67669 -11.38991 -10.43053 -10.12321 -9.95226 -9.72713 -9.26085 -9.01231 -6.59230 -0.29403 0.00253 0.59159 0.79547 0.96699 1.24835 1.37954 1.46335 2.04920 2.33044 2.56156 2.82949 3.35602 3.41974 3.58217 3.87435 4.02549 4.24163 4.37146 4.38875 4.53047 4.59153 4.82621 4.87011 4.98290 5.04959 5.21674 5.34559 5.54395 5.56663 5.69439 5.88729 6.17167 6.48389 6.56417 6.61383 7.51136 8.02544 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.006196 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.247222 B = 4518.124463 C = 5691.563540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.058 3.942 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.439 4.439 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.223 4.223 11 C -0.112 4.112 12 C -0.038 4.038 13 N -0.457 5.457 14 C 0.003 3.997 15 C -0.016 4.016 16 C -0.066 4.066 17 C -0.097 4.097 18 C -0.048 4.048 19 Cl -0.038 7.038 20 C 0.081 3.919 21 O -0.482 6.482 22 C 0.070 3.930 23 F -0.135 7.135 24 H 0.301 0.699 25 H 0.120 0.880 26 H 0.148 0.852 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -3.428 4.119 5.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.161 4.161 3 Si 0.780 3.220 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.095 0.905 9 C 0.045 3.955 10 C -0.248 4.248 11 C -0.131 4.131 12 C -0.197 4.197 13 N -0.164 5.164 14 C -0.136 4.136 15 C -0.018 4.018 16 C -0.085 4.085 17 C -0.116 4.116 18 C -0.076 4.076 19 Cl -0.009 7.009 20 C 0.034 3.966 21 O -0.295 6.295 22 C 0.049 3.951 23 F -0.114 7.114 24 H 0.112 0.888 25 H 0.138 0.862 26 H 0.166 0.834 27 H 0.177 0.823 28 H 0.162 0.838 29 H 0.188 0.812 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.211 -3.993 4.870 6.674 hybrid contribution -0.779 0.906 -1.109 1.630 sum 1.432 -3.087 3.761 5.072 Atomic orbital electron populations 1.69651 1.08971 1.32228 1.32892 1.26758 0.95254 1.03752 0.90365 0.85657 0.79379 0.76965 0.80047 1.17836 1.19743 1.18292 1.19367 0.92522 0.96065 1.38736 0.90458 1.18559 0.93800 0.92083 0.91068 1.21443 0.96951 1.03729 1.02724 1.21804 0.93863 0.98504 0.98935 1.22385 1.00554 0.95794 1.00999 1.67172 1.13930 1.23528 1.11789 1.19468 0.89453 1.01137 1.03533 1.18648 0.97882 0.89848 0.95452 1.21246 0.94763 1.01134 0.91365 1.21158 1.00251 0.89357 1.00795 1.21083 1.00724 0.91529 0.94215 1.98349 1.85726 1.57023 1.59791 1.17804 0.99990 0.84514 0.94318 1.84829 1.53174 1.16528 1.74930 1.18216 0.97914 0.92249 0.86690 1.91439 1.74576 1.91239 1.54121 0.88792 0.86201 0.83448 0.82281 0.83754 0.81215 0.73296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.60 13.93 21.85 0.30 -38.30 16 2 C 0.06 2.71 5.44 85.29 0.46 3.18 16 3 Si 0.96 37.32 24.53 68.60 1.68 39.00 16 4 H -0.25 -9.32 6.46 99.48 0.64 -8.67 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -10.61 7.00 99.48 0.70 -9.91 16 7 C -0.44 -21.51 7.53 23.35 0.18 -21.34 16 8 H 0.08 4.06 6.92 -2.91 -0.02 4.04 16 9 C 0.05 2.39 5.13 -21.02 -0.11 2.28 16 10 C -0.22 -9.76 7.31 22.66 0.17 -9.60 16 11 C -0.11 -4.30 10.03 22.10 0.22 -4.08 16 12 C -0.04 -1.52 11.16 84.86 0.95 -0.58 16 13 N -0.46 -21.25 9.82 -182.95 -1.80 -23.04 16 14 C 0.00 0.13 6.12 42.44 0.26 0.39 16 15 C -0.02 -0.70 5.09 -20.02 -0.10 -0.80 16 16 C -0.07 -2.47 8.02 22.55 0.18 -2.29 16 17 C -0.10 -2.97 9.80 22.24 0.22 -2.75 16 18 C -0.05 -1.46 6.34 22.49 0.14 -1.32 16 19 Cl -0.04 -0.96 28.48 -2.72 -0.08 -1.03 16 20 C 0.08 2.74 6.70 22.51 0.15 2.89 16 21 O -0.48 -14.10 12.81 -93.42 -1.20 -15.29 16 22 C 0.07 2.85 7.26 22.75 0.17 3.02 16 23 F -0.14 -5.91 16.32 44.97 0.73 -5.18 16 24 H 0.30 12.74 8.30 -92.71 -0.77 11.97 16 25 H 0.12 5.02 4.51 -2.91 -0.01 5.01 16 26 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.16 5.31 8.06 -2.91 -0.02 5.28 16 28 H 0.14 5.50 7.25 -2.91 -0.02 5.48 16 29 H 0.17 4.08 8.06 -2.91 -0.02 4.05 16 30 H 0.41 8.12 9.06 -74.06 -0.67 7.45 16 Total: -1.00 -57.97 282.59 3.01 -54.96 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.48 Total: 19.88 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.88 Total: -30.99 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -1.49 Total: -61.34 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.20 Total: -15.29 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.73 Total: -5.18 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 1.68 Total: 39.00 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Total: -57.97 3.01 -54.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244631396.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.989 kcal (2) G-P(sol) polarization free energy of solvation -57.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds