Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30706 * 1 3 3 Si 1.86794 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47640 * 274.98859 * 3 2 1 5 5 H 1.48495 * 109.46941 * 34.99117 * 3 2 1 6 6 H 1.48505 * 109.47060 * 154.98498 * 3 2 1 7 7 C 1.40140 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99883 * 186.39527 * 7 2 1 9 9 C 1.40771 * 120.00344 * 6.39492 * 7 2 1 10 10 N 1.33717 * 119.94129 * 354.77407 * 9 7 2 11 11 C 1.31276 * 121.63863 * 179.97438 * 10 9 7 12 12 C 1.39081 * 121.34542 * 359.97438 * 11 10 9 13 13 C 1.38350 * 119.73806 * 359.97438 * 12 11 10 14 14 C 1.39731 * 118.47090 * 0.02562 * 13 12 11 15 15 C 1.47738 * 120.65218 * 179.97438 * 14 13 12 16 16 C 1.39786 * 120.13157 * 64.74555 * 15 14 13 17 17 C 1.37840 * 119.97857 * 179.74291 * 16 15 14 18 18 C 1.38549 * 120.24687 * 0.53149 * 17 16 15 19 19 Cl 1.73596 * 119.86866 * 179.69677 * 18 17 16 20 20 C 1.38857 * 120.26275 * 359.72270 * 18 17 16 21 21 O 1.35990 * 119.99232 * 179.97438 * 20 18 17 22 22 C 1.38625 * 120.02108 * 0.02562 * 20 18 17 23 23 F 1.35094 * 120.12534 * 179.97438 * 22 20 18 24 24 H 0.96996 * 119.99596 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.32745 * 179.71643 * 11 10 9 26 26 H 1.08007 * 120.12730 * 179.97438 * 12 11 10 27 27 H 1.07993 * 120.76554 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.01123 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.87973 * 180.25650 * 17 16 15 30 30 H 0.96697 * 113.99998 * 270.01951 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3832 2.1073 -1.3947 5 1 1.4952 2.6198 0.8029 6 1 3.5874 1.4119 0.5920 7 6 2.0077 -1.2137 -0.0005 8 1 3.0827 -1.2166 0.1036 9 6 1.3105 -2.4289 -0.1369 10 7 -0.0265 -2.4323 -0.1606 11 6 -0.7102 -3.5458 -0.2868 12 6 -0.0732 -4.7768 -0.4025 13 6 1.3088 -4.8386 -0.3857 14 6 2.0273 -3.6477 -0.2509 15 6 3.5044 -3.6578 -0.2267 16 6 4.2220 -4.0639 -1.3555 17 6 5.6002 -4.0671 -1.3311 18 6 6.2789 -3.6794 -0.1872 19 17 8.0146 -3.6946 -0.1648 20 6 5.5762 -3.2792 0.9416 21 8 6.2480 -2.9002 2.0617 22 6 4.1901 -3.2668 0.9276 23 9 3.5043 -2.8783 2.0248 24 1 -0.4849 0.8400 0.0004 25 1 -1.7894 -3.5057 -0.2969 26 1 -0.6552 -5.6808 -0.5050 27 1 1.8206 -5.7855 -0.4739 28 1 3.6968 -4.3715 -2.2476 29 1 6.1530 -4.3771 -2.2055 30 1 6.4315 -3.6253 2.6745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244634333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -37.396500 kcal Electronic energy + Delta-G solvation = -20669.411661 eV Core-core repulsion = 17177.072164 eV Total energy + Delta-G solvation = -3492.339497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.19933 -39.34537 -38.20626 -36.53294 -36.22040 -33.79274 -31.94998 -30.42756 -29.44583 -28.43997 -25.80724 -23.21749 -22.42446 -21.47657 -20.60068 -18.16374 -17.60394 -17.08653 -16.52789 -15.94941 -15.41209 -14.87072 -14.67070 -14.39543 -14.19051 -13.99514 -13.20369 -12.97774 -12.69577 -12.55048 -12.21725 -11.88953 -11.64022 -11.34211 -11.22827 -11.16320 -10.95021 -10.86730 -10.60299 -10.37371 -9.99464 -9.49381 -8.61288 -8.37982 -8.16845 -7.72479 -7.53932 -6.57692 -4.67880 1.20700 1.35965 2.21332 2.57421 2.83503 3.03793 3.09714 3.14627 3.69247 3.86763 4.13128 4.60773 4.77672 5.14743 5.26850 5.41263 5.70730 5.73806 5.95876 6.04532 6.17727 6.25236 6.36577 6.46073 6.63540 6.75423 6.92036 6.99176 7.18160 7.40895 7.55291 7.69019 7.87254 8.08608 8.47574 8.76119 9.93546 10.12945 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.006722 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.034163 B = 4164.247477 C = 5310.113381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.407 4.407 8 H 0.084 0.916 9 C 0.274 3.726 10 N -0.480 5.480 11 C 0.138 3.862 12 C -0.323 4.323 13 C -0.023 4.023 14 C -0.256 4.256 15 C 0.019 3.981 16 C -0.094 4.094 17 C -0.108 4.108 18 C -0.060 4.060 19 Cl -0.067 7.067 20 C 0.075 3.925 21 O -0.478 6.478 22 C 0.095 3.905 23 F -0.114 7.114 24 H 0.277 0.723 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -6.113 -0.830 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.158 4.158 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.102 0.898 9 C 0.151 3.849 10 N -0.191 5.191 11 C -0.032 4.032 12 C -0.346 4.346 13 C -0.047 4.047 14 C -0.261 4.261 15 C 0.017 3.983 16 C -0.113 4.113 17 C -0.127 4.127 18 C -0.087 4.087 19 Cl -0.038 7.038 20 C 0.028 3.972 21 O -0.287 6.287 22 C 0.074 3.926 23 F -0.093 7.093 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.324 -4.528 -0.932 9.521 hybrid contribution 0.836 -0.513 0.361 1.045 sum 9.159 -5.041 -0.572 10.471 Atomic orbital electron populations 1.70103 1.07314 1.28326 1.26540 1.26127 0.94919 1.01380 0.93389 0.86344 0.81001 0.80597 0.79413 1.19107 1.19725 1.18050 1.19623 0.94892 0.89613 1.39540 0.89804 1.18446 0.87901 0.90603 0.87918 1.68782 1.07071 1.26389 1.16857 1.22655 0.98917 0.88877 0.92704 1.21198 0.94431 0.98201 1.20759 1.20813 0.93855 0.95315 0.94735 1.19056 0.89277 0.95367 1.22429 1.18851 0.94370 0.94475 0.90591 1.21208 0.92291 0.99841 0.97913 1.20843 0.94238 1.01055 0.96588 1.20968 0.84455 1.07242 0.96065 1.98334 1.09522 1.97302 1.98672 1.17975 0.88125 1.02975 0.88144 1.84919 1.76154 1.37123 1.30496 1.18137 0.87660 1.01619 0.85176 1.91534 1.79205 1.87942 1.50572 0.91218 0.86176 0.88456 0.88407 0.84313 0.84615 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.28 11.48 55.56 0.64 -17.65 16 2 C 0.07 1.75 5.49 -17.32 -0.10 1.65 16 3 Si 0.90 18.85 29.57 -169.99 -5.03 13.82 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.41 -10.74 8.10 -37.91 -0.31 -11.05 16 8 H 0.08 2.17 5.89 -52.48 -0.31 1.86 16 9 C 0.27 7.23 6.45 -84.71 -0.55 6.68 16 10 N -0.48 -12.83 7.88 -10.90 -0.09 -12.91 16 11 C 0.14 3.21 11.17 -17.48 -0.20 3.01 16 12 C -0.32 -6.84 10.10 -39.23 -0.40 -7.24 16 13 C -0.02 -0.48 9.88 -38.98 -0.39 -0.87 16 14 C -0.26 -5.92 5.07 -104.08 -0.53 -6.44 16 15 C 0.02 0.38 4.51 -104.84 -0.47 -0.09 16 16 C -0.09 -1.56 9.75 -39.15 -0.38 -1.94 16 17 C -0.11 -1.57 9.80 -39.61 -0.39 -1.96 16 18 C -0.06 -0.93 6.34 -39.24 -0.25 -1.18 16 19 Cl -0.07 -0.90 28.48 -51.86 -1.48 -2.38 16 20 C 0.07 1.29 6.70 -39.21 -0.26 1.03 16 21 O -0.48 -7.49 12.81 -19.71 -0.25 -7.75 16 22 C 0.09 1.90 5.92 -38.84 -0.23 1.67 16 23 F -0.11 -2.57 15.95 2.25 0.04 -2.53 16 24 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 25 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 26 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.39 4.11 9.06 45.56 0.41 4.53 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -29.46 290.30 -7.37 -36.84 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -1.14 Total: 4.89 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -4.44 Total: -16.72 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.55 Total: -30.56 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.25 Total: -7.75 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.48 Total: -2.38 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.46 -7.37 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244634333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.558 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds