Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30706 * 1 3 3 Si 1.86794 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47640 * 274.98859 * 3 2 1 5 5 H 1.48495 * 109.46941 * 34.99117 * 3 2 1 6 6 H 1.48505 * 109.47060 * 154.98498 * 3 2 1 7 7 C 1.40140 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99883 * 186.39527 * 7 2 1 9 9 C 1.40771 * 120.00344 * 6.39492 * 7 2 1 10 10 N 1.33717 * 119.94129 * 354.77407 * 9 7 2 11 11 C 1.31276 * 121.63863 * 179.97438 * 10 9 7 12 12 C 1.39081 * 121.34542 * 359.97438 * 11 10 9 13 13 C 1.38350 * 119.73806 * 359.97438 * 12 11 10 14 14 C 1.39731 * 118.47090 * 0.02562 * 13 12 11 15 15 C 1.47738 * 120.65218 * 179.97438 * 14 13 12 16 16 C 1.39786 * 120.13157 * 64.74555 * 15 14 13 17 17 C 1.37840 * 119.97857 * 179.74291 * 16 15 14 18 18 C 1.38549 * 120.24687 * 0.53149 * 17 16 15 19 19 Cl 1.73596 * 119.86866 * 179.69677 * 18 17 16 20 20 C 1.38857 * 120.26275 * 359.72270 * 18 17 16 21 21 O 1.35990 * 119.99232 * 179.97438 * 20 18 17 22 22 C 1.38625 * 120.02108 * 0.02562 * 20 18 17 23 23 F 1.35094 * 120.12534 * 179.97438 * 22 20 18 24 24 H 0.96996 * 119.99596 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.32745 * 179.71643 * 11 10 9 26 26 H 1.08007 * 120.12730 * 179.97438 * 12 11 10 27 27 H 1.07993 * 120.76554 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.01123 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.87973 * 180.25650 * 17 16 15 30 30 H 0.96697 * 113.99998 * 270.01951 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3832 2.1073 -1.3947 5 1 1.4952 2.6198 0.8029 6 1 3.5874 1.4119 0.5920 7 6 2.0077 -1.2137 -0.0005 8 1 3.0827 -1.2166 0.1036 9 6 1.3105 -2.4289 -0.1369 10 7 -0.0265 -2.4323 -0.1606 11 6 -0.7102 -3.5458 -0.2868 12 6 -0.0732 -4.7768 -0.4025 13 6 1.3088 -4.8386 -0.3857 14 6 2.0273 -3.6477 -0.2509 15 6 3.5044 -3.6578 -0.2267 16 6 4.2220 -4.0639 -1.3555 17 6 5.6002 -4.0671 -1.3311 18 6 6.2789 -3.6794 -0.1872 19 17 8.0146 -3.6946 -0.1648 20 6 5.5762 -3.2792 0.9416 21 8 6.2480 -2.9002 2.0617 22 6 4.1901 -3.2668 0.9276 23 9 3.5043 -2.8783 2.0248 24 1 -0.4849 0.8400 0.0004 25 1 -1.7894 -3.5057 -0.2969 26 1 -0.6552 -5.6808 -0.5050 27 1 1.8206 -5.7855 -0.4739 28 1 3.6968 -4.3715 -2.2476 29 1 6.1530 -4.3771 -2.2055 30 1 6.4315 -3.6253 2.6745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244634333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -55.428427 kcal Electronic energy + Delta-G solvation = -20670.193584 eV Core-core repulsion = 17177.072164 eV Total energy + Delta-G solvation = -3493.121420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.77759 -40.74097 -39.85348 -37.81309 -37.43377 -35.60596 -33.51606 -32.19993 -30.78794 -29.98975 -27.60156 -24.73781 -23.81396 -23.20086 -22.16158 -19.54810 -19.38163 -18.46684 -17.99072 -17.53722 -16.92555 -16.44019 -16.18495 -15.93378 -15.91321 -15.41320 -14.63688 -14.56052 -14.22794 -13.91782 -13.86135 -13.47249 -13.04635 -12.96211 -12.85672 -12.79972 -12.45515 -12.19469 -12.04864 -11.81714 -11.57101 -11.28120 -10.23863 -9.82919 -9.69972 -9.53294 -9.19390 -8.38116 -6.55435 -0.13230 0.03011 0.82891 1.00338 1.11700 1.32994 1.45770 1.47430 2.15682 2.37320 2.77105 2.88057 3.44102 3.79993 3.86496 3.96760 4.13924 4.30804 4.37198 4.50727 4.73078 4.85747 4.93786 4.96020 5.05452 5.16460 5.33130 5.44418 5.58643 5.70411 5.84451 6.10122 6.23901 6.59448 6.65239 6.91688 8.13230 8.34768 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.006722 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.034163 B = 4164.247477 C = 5310.113381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.029 3.971 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.443 4.443 8 H 0.076 0.924 9 C 0.245 3.755 10 N -0.521 5.521 11 C 0.113 3.887 12 C -0.310 4.310 13 C -0.031 4.031 14 C -0.256 4.256 15 C -0.008 4.008 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.057 4.057 19 Cl -0.042 7.042 20 C 0.079 3.921 21 O -0.487 6.487 22 C 0.063 3.937 23 F -0.140 7.140 24 H 0.282 0.718 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.894 -7.424 -1.955 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.095 0.905 9 C 0.121 3.879 10 N -0.234 5.234 11 C -0.054 4.054 12 C -0.333 4.333 13 C -0.055 4.055 14 C -0.261 4.261 15 C -0.010 4.010 16 C -0.108 4.108 17 C -0.107 4.107 18 C -0.085 4.085 19 Cl -0.013 7.013 20 C 0.032 3.968 21 O -0.299 6.299 22 C 0.042 3.958 23 F -0.119 7.119 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.193 0.807 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.402 -5.882 -2.051 12.124 hybrid contribution 0.314 -0.339 0.713 0.850 sum 10.716 -6.221 -1.338 12.463 Atomic orbital electron populations 1.70176 1.08574 1.29304 1.28474 1.26893 0.95658 1.04233 0.92667 0.85384 0.79120 0.76752 0.79818 1.18009 1.18584 1.18882 1.19723 0.94660 0.90724 1.42224 0.90545 1.18842 0.88331 0.92105 0.88578 1.68690 1.07837 1.28389 1.18438 1.23107 0.99999 0.89215 0.93106 1.21594 0.94955 0.98630 1.18073 1.21254 0.94061 0.96185 0.94036 1.19381 0.91253 0.94950 1.20487 1.18899 0.93171 0.96781 0.92118 1.21383 0.93224 0.98992 0.97154 1.21222 0.93433 0.98745 0.97283 1.21111 0.85853 1.05949 0.95564 1.98350 1.07236 1.97107 1.98606 1.17980 0.87226 1.02340 0.89248 1.84853 1.75644 1.38698 1.30751 1.18450 0.88876 1.03543 0.84891 1.91456 1.79982 1.88639 1.51820 0.90745 0.84316 0.84969 0.84897 0.82587 0.80651 0.73360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.37 11.48 21.86 0.25 -40.12 16 2 C 0.03 1.50 5.49 85.32 0.47 1.97 16 3 Si 0.97 39.86 29.57 68.60 2.03 41.89 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.44 -24.38 8.10 23.35 0.19 -24.19 16 8 H 0.08 4.15 5.89 -2.91 -0.02 4.14 16 9 C 0.24 13.37 6.45 40.37 0.26 13.64 16 10 N -0.52 -28.84 7.88 -188.41 -1.48 -30.32 16 11 C 0.11 5.28 11.17 84.98 0.95 6.23 16 12 C -0.31 -12.68 10.10 22.50 0.23 -12.45 16 13 C -0.03 -1.27 9.88 22.66 0.22 -1.05 16 14 C -0.26 -11.90 5.07 -19.51 -0.10 -12.00 16 15 C -0.01 -0.31 4.51 -20.01 -0.09 -0.40 16 16 C -0.09 -2.74 9.75 22.55 0.22 -2.52 16 17 C -0.09 -2.24 9.80 22.25 0.22 -2.02 16 18 C -0.06 -1.61 6.34 22.49 0.14 -1.46 16 19 Cl -0.04 -0.98 28.48 -2.72 -0.08 -1.06 16 20 C 0.08 2.63 6.70 22.51 0.15 2.78 16 21 O -0.49 -14.67 12.81 -93.44 -1.20 -15.86 16 22 C 0.06 2.53 5.92 22.75 0.13 2.66 16 23 F -0.14 -6.58 15.95 44.97 0.72 -5.86 16 24 H 0.28 13.76 8.29 -92.71 -0.77 12.99 16 25 H 0.14 5.71 8.06 -2.91 -0.02 5.68 16 26 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 29 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.41 8.06 9.06 -74.06 -0.67 7.39 16 Total: -1.00 -66.76 290.30 3.78 -62.98 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.55 Total: 17.18 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 3.00 Total: -28.82 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.23 Total: -70.44 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.20 Total: -15.86 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.72 Total: -5.86 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -66.76 3.78 -62.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244634333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.547 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds