Wall clock time and date at job start Tue Mar 31 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86802 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47517 * 239.99897 * 3 2 1 5 5 H 1.48503 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47254 * 119.99845 * 3 2 1 7 7 C 1.39901 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 197.60121 * 7 2 1 9 9 C 1.41375 * 119.99859 * 17.60184 * 7 2 1 10 10 C 1.40807 * 120.56847 * 203.56724 * 9 7 2 11 11 N 1.31504 * 120.69475 * 179.97438 * 10 9 7 12 12 C 1.32155 * 122.08275 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.46257 * 179.97438 * 12 11 10 14 14 C 1.40092 * 121.07709 * 359.97438 * 12 11 10 15 15 C 1.48343 * 120.41655 * 180.02562 * 14 12 11 16 16 C 1.39392 * 120.07240 * 244.97338 * 15 14 12 17 17 C 1.37887 * 119.94784 * 180.02562 * 16 15 14 18 18 C 1.38868 * 120.08981 * 359.97438 * 17 16 15 19 19 O 1.35871 * 119.92691 * 180.02562 * 18 17 16 20 20 C 1.38778 * 120.14939 * 359.97438 * 18 17 16 21 21 C 1.38060 * 120.04936 * 359.77380 * 20 18 17 22 22 Cl 1.73604 * 120.04515 * 180.27094 * 21 20 18 23 23 C 1.39013 * 119.15564 * 0.02562 * 14 12 11 24 24 H 0.97007 * 119.99519 * 0.02562 * 1 2 3 25 25 H 1.07996 * 119.64891 * 359.70821 * 10 9 7 26 26 H 1.07999 * 120.02591 * 0.03649 * 16 15 14 27 27 H 1.07994 * 119.95502 * 180.02562 * 17 16 15 28 28 H 0.96700 * 114.00264 * 89.99564 * 19 18 17 29 29 H 1.08000 * 119.97674 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.93158 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0080 -1.2116 -0.0005 8 1 3.0502 -1.2336 0.2823 9 6 1.3508 -2.4071 -0.3713 10 6 1.8307 -3.6549 0.0706 11 7 1.2210 -4.7684 -0.2723 12 6 0.1437 -4.7717 -1.0379 13 9 -0.4402 -5.9471 -1.3582 14 6 -0.4025 -3.5762 -1.5227 15 6 -1.6125 -3.5970 -2.3806 16 6 -1.5370 -3.1696 -3.7053 17 6 -2.6635 -3.1895 -4.5002 18 6 -3.8728 -3.6351 -3.9831 19 8 -4.9806 -3.6538 -4.7695 20 6 -3.9522 -4.0625 -2.6651 21 6 -2.8268 -4.0500 -1.8654 22 17 -2.9247 -4.5913 -0.2188 23 6 0.2038 -2.3705 -1.1897 24 1 -0.4850 0.8401 -0.0004 25 1 2.7113 -3.6981 0.6943 26 1 -0.5969 -2.8234 -4.1087 27 1 -2.6050 -2.8588 -5.5266 28 1 -5.1068 -4.4824 -5.2518 29 1 -4.8940 -4.4089 -2.2660 30 1 -0.1934 -1.4319 -1.5473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245082982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:26 Heat of formation + Delta-G solvation = -47.290089 kcal Electronic energy + Delta-G solvation = -20333.499148 eV Core-core repulsion = 16840.730633 eV Total energy + Delta-G solvation = -3492.768515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.54190 -39.65617 -38.31053 -36.84517 -35.76718 -34.21306 -32.00399 -30.65551 -30.35442 -27.92792 -25.55715 -23.20813 -22.62349 -21.76824 -20.78425 -18.43892 -17.66259 -16.65397 -16.12496 -15.94496 -15.67043 -15.40539 -14.90951 -14.52334 -14.16605 -13.61318 -13.41770 -12.85628 -12.64198 -12.39703 -12.23267 -12.11669 -11.79121 -11.76129 -11.29895 -11.26683 -11.00009 -10.74355 -10.56011 -10.50846 -10.17206 -9.50704 -8.84057 -8.62311 -8.48515 -8.04891 -7.60717 -7.04340 -4.64762 1.20160 1.36853 2.28306 2.50125 2.63997 2.93719 2.95009 3.02271 3.66081 3.72388 4.25006 4.32210 4.98270 5.00413 5.15496 5.20592 5.33644 5.56819 5.72154 5.94785 6.08896 6.24195 6.40101 6.47610 6.53516 6.72323 6.76829 6.89680 6.92383 7.40049 7.58105 7.61573 7.73252 8.17448 8.44147 8.45527 9.19927 9.87186 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005892 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.589285 B = 4750.931111 C = 5636.494019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.055 3.945 10 C 0.012 3.988 11 N -0.489 5.489 12 C 0.176 3.824 13 F -0.143 7.143 14 C -0.108 4.108 15 C -0.009 4.009 16 C -0.081 4.081 17 C -0.141 4.141 18 C 0.102 3.898 19 O -0.496 6.496 20 C -0.140 4.140 21 C -0.005 4.005 22 Cl -0.053 7.053 23 C -0.092 4.092 24 H 0.288 0.712 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.387 0.613 29 H 0.136 0.864 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 -1.928 -6.796 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.050 3.950 10 C -0.149 4.149 11 N -0.201 5.201 12 C 0.022 3.978 13 F -0.123 7.123 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.099 4.099 17 C -0.160 4.160 18 C 0.058 3.942 19 O -0.306 6.306 20 C -0.159 4.159 21 C -0.032 4.032 22 Cl -0.024 7.024 23 C -0.117 4.117 24 H 0.099 0.901 25 H 0.156 0.844 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.243 0.757 29 H 0.153 0.847 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.610 -2.083 -6.135 8.570 hybrid contribution -0.178 0.845 -0.269 0.904 sum -5.788 -1.238 -6.404 8.721 Atomic orbital electron populations 1.69775 1.07732 1.30270 1.32745 1.26020 0.94837 1.01855 0.91992 0.86229 0.80108 0.79467 0.80307 1.18528 1.20102 1.18644 1.19529 0.98321 0.90588 1.38498 0.89388 1.18449 0.92221 0.93833 0.90494 1.22300 1.02015 0.86529 1.04097 1.66286 1.07835 1.33910 1.12029 1.17429 0.95390 0.79561 1.05409 1.91410 1.82717 1.46709 1.91479 1.18965 0.96169 0.93913 1.02122 1.18721 0.91877 0.96968 0.93521 1.21112 0.98657 0.98151 0.91981 1.21355 0.91655 1.02195 1.00789 1.18204 0.86049 1.00436 0.89553 1.84826 1.42695 1.41416 1.61687 1.21125 0.97994 1.02914 0.93847 1.20821 0.94014 1.01220 0.87112 1.98378 1.98380 1.88020 1.17628 1.21679 0.97011 0.95270 0.97736 0.90081 0.84424 0.84538 0.85019 0.75718 0.84654 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.46 10.92 55.54 0.61 -17.86 16 2 C 0.07 1.65 5.17 -17.34 -0.09 1.56 16 3 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.44 9.08 -37.77 -0.34 -10.78 16 8 H 0.09 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.05 1.34 5.59 -106.71 -0.60 0.74 16 10 C 0.01 0.28 10.96 -16.72 -0.18 0.10 16 11 N -0.49 -12.09 10.33 -12.58 -0.13 -12.22 16 12 C 0.18 4.22 7.60 -16.72 -0.13 4.10 16 13 F -0.14 -3.33 16.02 2.25 0.04 -3.29 16 14 C -0.11 -2.45 4.67 -104.76 -0.49 -2.94 16 15 C -0.01 -0.18 5.03 -104.85 -0.53 -0.71 16 16 C -0.08 -1.34 9.73 -39.28 -0.38 -1.72 16 17 C -0.14 -2.00 9.97 -39.48 -0.39 -2.40 16 18 C 0.10 1.45 6.70 -39.15 -0.26 1.19 16 19 O -0.50 -5.82 13.50 -19.34 -0.26 -6.08 16 20 C -0.14 -2.17 9.76 -39.45 -0.38 -2.55 16 21 C 0.00 -0.09 6.14 -39.19 -0.24 -0.33 16 22 Cl -0.05 -1.02 26.74 -51.86 -1.39 -2.41 16 23 C -0.09 -2.20 8.51 -38.27 -0.33 -2.52 16 24 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 25 H 0.14 2.96 8.06 -52.49 -0.42 2.53 16 26 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.39 2.53 9.06 45.56 0.41 2.95 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.14 3.37 6.19 -52.48 -0.32 3.04 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -27.87 291.00 -7.28 -35.15 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -1.15 Total: 6.71 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -4.35 Total: -16.27 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.48 Total: -30.07 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.26 Total: -6.08 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.39 Total: -2.41 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.87 -7.28 -35.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245082982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.141 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds