Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86802 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47517 * 239.99897 * 3 2 1 5 5 H 1.48503 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47254 * 119.99845 * 3 2 1 7 7 C 1.39901 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 197.60121 * 7 2 1 9 9 C 1.41375 * 119.99859 * 17.60184 * 7 2 1 10 10 C 1.40807 * 120.56847 * 203.56724 * 9 7 2 11 11 N 1.31504 * 120.69475 * 179.97438 * 10 9 7 12 12 C 1.32155 * 122.08275 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.46257 * 179.97438 * 12 11 10 14 14 C 1.40092 * 121.07709 * 359.97438 * 12 11 10 15 15 C 1.48343 * 120.41655 * 180.02562 * 14 12 11 16 16 C 1.39392 * 120.07240 * 244.97338 * 15 14 12 17 17 C 1.37887 * 119.94784 * 180.02562 * 16 15 14 18 18 C 1.38868 * 120.08981 * 359.97438 * 17 16 15 19 19 O 1.35871 * 119.92691 * 180.02562 * 18 17 16 20 20 C 1.38778 * 120.14939 * 359.97438 * 18 17 16 21 21 C 1.38060 * 120.04936 * 359.77380 * 20 18 17 22 22 Cl 1.73604 * 120.04515 * 180.27094 * 21 20 18 23 23 C 1.39013 * 119.15564 * 0.02562 * 14 12 11 24 24 H 0.97007 * 119.99519 * 0.02562 * 1 2 3 25 25 H 1.07996 * 119.64891 * 359.70821 * 10 9 7 26 26 H 1.07999 * 120.02591 * 0.03649 * 16 15 14 27 27 H 1.07994 * 119.95502 * 180.02562 * 17 16 15 28 28 H 0.96700 * 114.00264 * 89.99564 * 19 18 17 29 29 H 1.08000 * 119.97674 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.93158 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0080 -1.2116 -0.0005 8 1 3.0502 -1.2336 0.2823 9 6 1.3508 -2.4071 -0.3713 10 6 1.8307 -3.6549 0.0706 11 7 1.2210 -4.7684 -0.2723 12 6 0.1437 -4.7717 -1.0379 13 9 -0.4402 -5.9471 -1.3582 14 6 -0.4025 -3.5762 -1.5227 15 6 -1.6125 -3.5970 -2.3806 16 6 -1.5370 -3.1696 -3.7053 17 6 -2.6635 -3.1895 -4.5002 18 6 -3.8728 -3.6351 -3.9831 19 8 -4.9806 -3.6538 -4.7695 20 6 -3.9522 -4.0625 -2.6651 21 6 -2.8268 -4.0500 -1.8654 22 17 -2.9247 -4.5913 -0.2188 23 6 0.2038 -2.3705 -1.1897 24 1 -0.4850 0.8401 -0.0004 25 1 2.7113 -3.6981 0.6943 26 1 -0.5969 -2.8234 -4.1087 27 1 -2.6050 -2.8588 -5.5266 28 1 -5.1068 -4.4824 -5.2518 29 1 -4.8940 -4.4089 -2.2660 30 1 -0.1934 -1.4319 -1.5473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245082982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -63.877978 kcal Electronic energy + Delta-G solvation = -20334.218453 eV Core-core repulsion = 16840.730633 eV Total energy + Delta-G solvation = -3493.487820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.36631 -40.93977 -39.96819 -38.08736 -37.10894 -35.99539 -33.56193 -32.15188 -31.89849 -29.38892 -27.36948 -24.71185 -23.97435 -23.44600 -22.32525 -19.54157 -19.35010 -18.48090 -17.79582 -17.40395 -17.08009 -16.71106 -16.39889 -16.25534 -15.43271 -15.13613 -14.78374 -14.30058 -14.25699 -14.10959 -13.79110 -13.63579 -13.37878 -13.36167 -12.97288 -12.81070 -12.39945 -12.24781 -11.98841 -11.78230 -11.62571 -11.21139 -10.42409 -10.31956 -9.94600 -9.67028 -9.25806 -8.77550 -6.48491 -0.11124 0.12534 0.56569 0.83775 1.12129 1.42371 1.51485 1.55670 2.17540 2.41772 2.58343 3.18849 3.28772 3.46544 3.68266 3.79971 4.07030 4.22063 4.34712 4.51262 4.64791 4.79463 4.88499 4.92337 5.11926 5.17062 5.23432 5.32097 5.56599 5.62045 5.74920 5.92784 6.36509 6.62375 6.65795 6.81043 7.34860 8.16364 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005892 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.589285 B = 4750.931111 C = 5636.494019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.460 4.460 8 H 0.098 0.902 9 C 0.036 3.964 10 C -0.004 4.004 11 N -0.505 5.505 12 C 0.153 3.847 13 F -0.143 7.143 14 C -0.092 4.092 15 C -0.049 4.049 16 C -0.083 4.083 17 C -0.131 4.131 18 C 0.124 3.876 19 O -0.495 6.495 20 C -0.141 4.141 21 C -0.020 4.020 22 Cl -0.073 7.073 23 C -0.110 4.110 24 H 0.296 0.704 25 H 0.154 0.846 26 H 0.143 0.857 27 H 0.167 0.833 28 H 0.415 0.585 29 H 0.154 0.846 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -0.655 -8.463 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.488 4.488 8 H 0.116 0.884 9 C 0.031 3.969 10 C -0.165 4.165 11 N -0.217 5.217 12 C 0.000 4.000 13 F -0.123 7.123 14 C -0.095 4.095 15 C -0.051 4.051 16 C -0.102 4.102 17 C -0.149 4.149 18 C 0.079 3.921 19 O -0.309 6.309 20 C -0.160 4.160 21 C -0.046 4.046 22 Cl -0.044 7.044 23 C -0.135 4.135 24 H 0.107 0.893 25 H 0.172 0.828 26 H 0.160 0.840 27 H 0.185 0.815 28 H 0.275 0.725 29 H 0.172 0.828 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.447 -0.853 -7.820 10.171 hybrid contribution -0.059 0.439 0.150 0.468 sum -6.506 -0.413 -7.670 10.066 Atomic orbital electron populations 1.69831 1.09245 1.31642 1.32502 1.26884 0.95447 1.04907 0.90803 0.85129 0.78706 0.74858 0.80469 1.17994 1.19452 1.18051 1.19878 0.98930 0.91152 1.38883 0.88443 1.18773 0.92750 0.94522 0.90840 1.22552 1.02783 0.86325 1.04842 1.66247 1.08434 1.34467 1.12528 1.17638 0.95836 0.80133 1.06422 1.91389 1.82728 1.46666 1.91546 1.19102 0.96548 0.92770 1.01105 1.18758 0.91224 1.00392 0.94725 1.21237 1.00090 0.97792 0.91041 1.21660 0.90559 1.00760 1.01909 1.18213 0.86598 0.98156 0.89165 1.84769 1.41290 1.43442 1.61412 1.21344 0.97722 1.02698 0.94278 1.20952 0.94753 1.02257 0.86687 1.98363 1.98413 1.88339 1.19248 1.21646 0.97713 0.95447 0.98720 0.89323 0.82844 0.83967 0.81536 0.72462 0.82805 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.32 10.92 21.82 0.24 -38.09 16 2 C 0.04 1.69 5.17 85.24 0.44 2.13 16 3 Si 0.99 33.72 29.59 68.60 2.03 35.75 16 4 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 5 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 7 C -0.46 -21.99 9.08 23.45 0.21 -21.77 16 8 H 0.10 4.32 7.90 -2.91 -0.02 4.30 16 9 C 0.04 1.80 5.59 -21.22 -0.12 1.69 16 10 C 0.00 -0.19 10.96 85.37 0.94 0.75 16 11 N -0.50 -25.72 10.33 -193.71 -2.00 -27.72 16 12 C 0.15 7.57 7.60 85.09 0.65 8.21 16 13 F -0.14 -6.83 16.02 44.97 0.72 -6.11 16 14 C -0.09 -4.27 4.67 -19.95 -0.09 -4.36 16 15 C -0.05 -1.95 5.03 -20.01 -0.10 -2.05 16 16 C -0.08 -2.67 9.73 22.46 0.22 -2.46 16 17 C -0.13 -3.28 9.97 22.34 0.22 -3.06 16 18 C 0.12 3.09 6.70 22.55 0.15 3.24 16 19 O -0.50 -9.39 13.50 -92.11 -1.24 -10.64 16 20 C -0.14 -4.12 9.76 22.36 0.22 -3.90 16 21 C -0.02 -0.72 6.14 22.53 0.14 -0.58 16 22 Cl -0.07 -2.84 26.74 -2.72 -0.07 -2.91 16 23 C -0.11 -5.42 8.51 23.12 0.20 -5.23 16 24 H 0.30 12.70 8.30 -92.70 -0.77 11.93 16 25 H 0.15 6.76 8.06 -2.91 -0.02 6.74 16 26 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 27 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 28 H 0.42 3.39 9.06 -74.06 -0.67 2.72 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.13 6.55 6.19 -2.91 -0.02 6.53 16 Total: -1.00 -60.89 291.00 3.29 -57.60 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.55 Total: 19.52 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.07 Total: -27.39 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -1.76 Total: -65.81 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.24 Total: -10.64 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.72 Total: -6.11 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -60.89 3.29 -57.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245082982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.279 kcal (2) G-P(sol) polarization free energy of solvation -60.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds