Wall clock time and date at job start Tue Mar 31 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 120.00246 * 2 1 4 4 H 1.48496 * 109.47012 * 264.97729 * 3 2 1 5 5 H 1.48502 * 109.47053 * 24.97368 * 3 2 1 6 6 H 1.48496 * 109.47509 * 144.97288 * 3 2 1 7 7 C 1.40049 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00221 * 347.33716 * 7 2 1 9 9 C 1.41339 * 119.99706 * 167.34088 * 7 2 1 10 10 C 1.40854 * 120.14348 * 166.56150 * 9 7 2 11 11 N 1.31858 * 119.96006 * 179.97438 * 10 9 7 12 12 C 1.32210 * 120.28593 * 359.97438 * 11 10 9 13 13 C 1.40000 * 120.29480 * 0.02562 * 12 11 10 14 14 C 1.48284 * 119.98486 * 179.97438 * 13 12 11 15 15 C 1.39459 * 120.08288 * 310.53713 * 14 13 12 16 16 C 1.38220 * 120.00102 * 179.76679 * 15 14 13 17 17 F 1.35096 * 119.91282 * 180.25248 * 16 15 14 18 18 C 1.38484 * 120.17593 * 0.51069 * 16 15 14 19 19 C 1.38863 * 120.17467 * 359.74084 * 18 16 15 20 20 N 1.39762 * 120.00578 * 180.02562 * 19 18 16 21 21 C 1.38848 * 119.99527 * 0.02562 * 19 18 16 22 22 Cl 1.73602 * 120.08911 * 180.02562 * 21 19 18 23 23 N 1.32547 * 120.03163 * 0.26786 * 13 12 11 24 24 H 0.96994 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.02268 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.84735 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.99943 * 0.02562 * 15 14 13 28 28 H 1.08005 * 119.91082 * 179.76674 * 18 16 15 29 29 H 0.97001 * 120.00354 * 179.97438 * 20 19 18 30 30 H 0.97004 * 119.99494 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5951 1.9850 -1.3947 5 1 1.3898 2.6810 0.5911 6 1 3.4818 1.4731 0.8036 7 6 2.0075 -1.2129 0.0005 8 1 1.4872 -2.1367 0.2060 9 6 3.3951 -1.2279 -0.2677 10 6 4.1557 -2.3818 0.0046 11 7 5.4499 -2.3920 -0.2476 12 6 6.0386 -1.3230 -0.7561 13 6 5.2935 -0.1701 -1.0311 14 6 5.9609 1.0252 -1.6009 15 6 7.1285 1.5180 -1.0188 16 6 7.7519 2.6294 -1.5542 17 9 8.8857 3.1021 -0.9920 18 6 7.2144 3.2628 -2.6622 19 6 6.0492 2.7815 -3.2445 20 7 5.5101 3.4232 -4.3629 21 6 5.4197 1.6627 -2.7154 22 17 3.9633 1.0585 -3.4418 23 7 3.9929 -0.1445 -0.7770 24 1 -0.4849 0.8400 0.0004 25 1 3.6792 -3.2576 0.4196 26 1 7.0992 -1.3390 -0.9595 27 1 7.5480 1.0286 -0.1522 28 1 7.7029 4.1332 -3.0748 29 1 4.6963 3.0868 -4.7698 30 1 5.9497 4.2051 -4.7322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245463890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:08 Heat of formation + Delta-G solvation = -0.308026 kcal Electronic energy + Delta-G solvation = -20561.784738 eV Core-core repulsion = 17103.346269 eV Total energy + Delta-G solvation = -3458.438469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.86374 -39.78908 -38.77851 -35.95010 -34.83689 -34.10660 -32.72633 -31.52933 -29.26589 -28.64115 -26.21554 -24.15797 -22.61445 -22.01256 -20.97169 -18.06912 -17.60105 -17.43500 -16.43159 -15.87726 -15.69410 -15.53923 -15.38198 -15.21792 -14.99607 -13.95443 -13.63630 -13.36646 -13.00828 -12.78234 -12.37099 -12.10536 -11.77927 -11.66692 -11.49420 -11.04544 -10.85921 -10.67454 -10.54010 -10.39289 -9.75718 -9.40964 -9.31649 -8.62836 -7.97213 -7.65384 -7.59798 -7.09792 -4.90081 0.98641 1.34757 2.20438 2.53994 2.56738 3.35569 3.45594 3.51214 3.57766 3.63247 4.25813 4.31075 4.48261 4.57091 5.06401 5.14858 5.33850 5.50155 5.59945 5.72604 5.74841 5.95308 6.07059 6.19489 6.40330 6.56026 6.70210 6.77283 6.93360 7.21976 7.41947 7.57920 7.89284 8.16505 8.31566 8.84094 9.28135 9.79999 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.007338 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.964550 B = 3814.820885 C = 4530.439243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.086 3.914 3 Si 0.975 3.025 4 H -0.246 1.246 5 H -0.328 1.328 6 H -0.268 1.268 7 C -0.387 4.387 8 H 0.103 0.897 9 C 0.195 3.805 10 C -0.032 4.032 11 N -0.421 5.421 12 C -0.094 4.094 13 C 0.152 3.848 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.147 3.853 17 F -0.137 7.137 18 C -0.230 4.230 19 C 0.249 3.751 20 N -0.868 5.868 21 C -0.101 4.101 22 Cl -0.039 7.039 23 N -0.509 5.509 24 H 0.292 0.708 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.404 0.596 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 8.053 -6.811 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.139 4.139 3 Si 0.808 3.192 4 H -0.171 1.171 5 H -0.260 1.260 6 H -0.194 1.194 7 C -0.419 4.419 8 H 0.121 0.879 9 C 0.070 3.930 10 C -0.204 4.204 11 N -0.132 5.132 12 C -0.251 4.251 13 C 0.008 3.992 14 C 0.060 3.940 15 C -0.205 4.205 16 C 0.127 3.873 17 F -0.115 7.115 18 C -0.254 4.254 19 C 0.142 3.858 20 N -0.408 5.408 21 C -0.133 4.133 22 Cl -0.010 7.010 23 N -0.230 5.230 24 H 0.102 0.898 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.234 0.766 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.691 8.012 -6.844 13.659 hybrid contribution 0.067 0.887 -0.250 0.924 sum 8.758 8.899 -7.095 14.361 Atomic orbital electron populations 1.69618 1.08725 1.31520 1.30773 1.26406 0.94877 1.03724 0.88915 0.84951 0.77016 0.75664 0.81612 1.17108 1.26015 1.19449 1.19528 0.89770 0.96280 1.36292 0.87920 1.19367 0.94591 0.88451 0.90622 1.23219 0.89948 0.99694 1.07516 1.67744 1.11506 1.26806 1.07095 1.22403 0.99428 0.91036 1.12217 1.20006 0.91267 0.92111 0.95837 1.18078 0.92076 0.92422 0.91406 1.20863 0.97422 0.98458 1.03798 1.17111 0.83474 0.93866 0.92826 1.91490 1.48048 1.87767 1.84239 1.20273 0.99063 1.05442 1.00668 1.16948 0.91160 0.89964 0.87744 1.42508 1.31825 1.34624 1.31844 1.20426 0.93801 0.98769 1.00311 1.98378 1.34013 1.86898 1.81736 1.67735 1.08043 1.28457 1.18764 0.89770 0.83929 0.84696 0.83885 0.84368 0.76552 0.77032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.02 13.92 55.55 0.77 -19.24 16 2 C 0.09 2.19 5.52 -17.34 -0.10 2.10 16 3 Si 0.98 23.06 25.41 -169.99 -4.32 18.74 16 4 H -0.25 -5.65 5.65 56.52 0.32 -5.33 16 5 H -0.33 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.74 6.75 56.52 0.38 -6.36 16 7 C -0.39 -9.95 9.69 -37.72 -0.37 -10.31 16 8 H 0.10 2.64 8.06 -52.49 -0.42 2.21 16 9 C 0.19 4.83 6.21 -84.84 -0.53 4.31 16 10 C -0.03 -0.73 10.98 -16.55 -0.18 -0.92 16 11 N -0.42 -9.59 10.47 -12.05 -0.13 -9.72 16 12 C -0.09 -2.01 10.68 -16.73 -0.18 -2.19 16 13 C 0.15 3.34 5.81 -82.77 -0.48 2.86 16 14 C 0.06 1.19 5.61 -104.90 -0.59 0.60 16 15 C -0.18 -2.98 9.46 -39.13 -0.37 -3.35 16 16 C 0.15 2.12 7.29 -39.50 -0.29 1.84 16 17 F -0.14 -1.89 17.26 2.25 0.04 -1.86 16 18 C -0.23 -2.98 9.86 -39.26 -0.39 -3.37 16 19 C 0.25 3.51 6.75 -83.79 -0.57 2.95 16 20 N -0.87 -9.27 9.05 32.41 0.29 -8.97 16 21 C -0.10 -1.77 6.35 -38.95 -0.25 -2.02 16 22 Cl -0.04 -0.73 24.26 -51.86 -1.26 -1.99 16 23 N -0.51 -12.27 3.97 -7.51 -0.03 -12.30 16 24 H 0.29 6.82 8.29 -40.82 -0.34 6.48 16 25 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 26 H 0.14 2.51 8.03 -52.49 -0.42 2.09 16 27 H 0.14 2.18 8.03 -52.48 -0.42 1.76 16 28 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 29 H 0.40 4.34 7.50 -40.82 -0.31 4.03 16 30 H 0.40 2.97 8.84 -40.82 -0.36 2.61 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -28.17 282.91 -6.65 -34.82 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.01 Total: 3.77 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -4.28 Total: -7.51 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.91 Total: -50.23 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.32 Total: 18.74 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.26 Total: -1.99 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.17 -6.65 -34.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245463890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.513 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds