Wall clock time and date at job start Tue Mar 31 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 120.00246 * 2 1 4 4 H 1.48496 * 109.47012 * 264.97729 * 3 2 1 5 5 H 1.48502 * 109.47053 * 24.97368 * 3 2 1 6 6 H 1.48496 * 109.47509 * 144.97288 * 3 2 1 7 7 C 1.40049 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00221 * 347.33716 * 7 2 1 9 9 C 1.41339 * 119.99706 * 167.34088 * 7 2 1 10 10 C 1.40854 * 120.14348 * 166.56150 * 9 7 2 11 11 N 1.31858 * 119.96006 * 179.97438 * 10 9 7 12 12 C 1.32210 * 120.28593 * 359.97438 * 11 10 9 13 13 C 1.40000 * 120.29480 * 0.02562 * 12 11 10 14 14 C 1.48284 * 119.98486 * 179.97438 * 13 12 11 15 15 C 1.39459 * 120.08288 * 310.53713 * 14 13 12 16 16 C 1.38220 * 120.00102 * 179.76679 * 15 14 13 17 17 F 1.35096 * 119.91282 * 180.25248 * 16 15 14 18 18 C 1.38484 * 120.17593 * 0.51069 * 16 15 14 19 19 C 1.38863 * 120.17467 * 359.74084 * 18 16 15 20 20 N 1.39762 * 120.00578 * 180.02562 * 19 18 16 21 21 C 1.38848 * 119.99527 * 0.02562 * 19 18 16 22 22 Cl 1.73602 * 120.08911 * 180.02562 * 21 19 18 23 23 N 1.32547 * 120.03163 * 0.26786 * 13 12 11 24 24 H 0.96994 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.02268 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.84735 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.99943 * 0.02562 * 15 14 13 28 28 H 1.08005 * 119.91082 * 179.76674 * 18 16 15 29 29 H 0.97001 * 120.00354 * 179.97438 * 20 19 18 30 30 H 0.97004 * 119.99494 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5951 1.9850 -1.3947 5 1 1.3898 2.6810 0.5911 6 1 3.4818 1.4731 0.8036 7 6 2.0075 -1.2129 0.0005 8 1 1.4872 -2.1367 0.2060 9 6 3.3951 -1.2279 -0.2677 10 6 4.1557 -2.3818 0.0046 11 7 5.4499 -2.3920 -0.2476 12 6 6.0386 -1.3230 -0.7561 13 6 5.2935 -0.1701 -1.0311 14 6 5.9609 1.0252 -1.6009 15 6 7.1285 1.5180 -1.0188 16 6 7.7519 2.6294 -1.5542 17 9 8.8857 3.1021 -0.9920 18 6 7.2144 3.2628 -2.6622 19 6 6.0492 2.7815 -3.2445 20 7 5.5101 3.4232 -4.3629 21 6 5.4197 1.6627 -2.7154 22 17 3.9633 1.0585 -3.4418 23 7 3.9929 -0.1445 -0.7770 24 1 -0.4849 0.8400 0.0004 25 1 3.6792 -3.2576 0.4196 26 1 7.0992 -1.3390 -0.9595 27 1 7.5480 1.0286 -0.1522 28 1 7.7029 4.1332 -3.0748 29 1 4.6963 3.0868 -4.7698 30 1 5.9497 4.2051 -4.7322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245463890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:08 Heat of formation + Delta-G solvation = -17.918547 kcal Electronic energy + Delta-G solvation = -20562.548388 eV Core-core repulsion = 17103.346269 eV Total energy + Delta-G solvation = -3459.202119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.96914 -41.39836 -40.15022 -37.29129 -36.15462 -35.85047 -34.43500 -33.10773 -30.71749 -29.79900 -28.02309 -25.68794 -24.23015 -23.30577 -22.48403 -19.83559 -18.94305 -18.59156 -17.65495 -17.54512 -17.41916 -16.98672 -16.65770 -16.38466 -16.26305 -15.41734 -15.23114 -14.80220 -14.55580 -14.31362 -13.86282 -13.64470 -13.46334 -13.23498 -13.00139 -12.72086 -12.51225 -12.36190 -11.93627 -11.74339 -11.53768 -11.29189 -11.02080 -10.16077 -9.58700 -9.39014 -8.99948 -8.70467 -6.82168 -0.33631 0.14464 0.50648 0.77325 1.23428 1.45818 1.57817 1.60411 2.34534 2.39964 2.54778 2.58309 3.13169 3.30088 3.54326 3.90078 3.95177 3.97282 4.13693 4.31509 4.38377 4.50850 4.65604 4.72495 4.95976 5.03298 5.10084 5.17717 5.58270 5.62658 5.93659 6.23195 6.30404 6.42180 6.80810 7.00769 7.45717 7.94261 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.007338 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.964550 B = 3814.820885 C = 4530.439243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.065 3.935 3 Si 1.016 2.984 4 H -0.238 1.238 5 H -0.324 1.324 6 H -0.291 1.291 7 C -0.419 4.419 8 H 0.089 0.911 9 C 0.187 3.813 10 C -0.046 4.046 11 N -0.427 5.427 12 C -0.084 4.084 13 C 0.148 3.852 14 C 0.034 3.966 15 C -0.189 4.189 16 C 0.154 3.846 17 F -0.131 7.131 18 C -0.210 4.210 19 C 0.257 3.743 20 N -0.851 5.851 21 C -0.122 4.122 22 Cl -0.060 7.060 23 N -0.519 5.519 24 H 0.300 0.700 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.148 0.852 28 H 0.178 0.822 29 H 0.406 0.594 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.482 10.125 -8.016 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.157 4.157 3 Si 0.848 3.152 4 H -0.162 1.162 5 H -0.256 1.256 6 H -0.219 1.219 7 C -0.451 4.451 8 H 0.107 0.893 9 C 0.061 3.939 10 C -0.216 4.216 11 N -0.138 5.138 12 C -0.241 4.241 13 C 0.004 3.996 14 C 0.031 3.969 15 C -0.211 4.211 16 C 0.134 3.866 17 F -0.109 7.109 18 C -0.234 4.234 19 C 0.147 3.853 20 N -0.392 5.392 21 C -0.154 4.154 22 Cl -0.031 7.031 23 N -0.240 5.240 24 H 0.110 0.890 25 H 0.174 0.826 26 H 0.184 0.816 27 H 0.165 0.835 28 H 0.195 0.805 29 H 0.236 0.764 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.115 10.097 -8.079 17.052 hybrid contribution -0.403 0.296 0.044 0.502 sum 10.713 10.393 -8.034 16.951 Atomic orbital electron populations 1.69612 1.09137 1.32353 1.32517 1.26774 0.95243 1.04944 0.88763 0.84369 0.75226 0.74198 0.81401 1.16233 1.25623 1.21870 1.19494 0.90510 0.96111 1.39002 0.89295 1.19496 0.94579 0.89355 0.90500 1.23407 0.90236 0.99924 1.07995 1.67819 1.11177 1.27483 1.07349 1.23019 1.00835 0.90324 1.09928 1.20523 0.90550 0.93682 0.94886 1.17980 0.93458 0.92564 0.92861 1.20869 0.96843 0.99332 1.04063 1.17084 0.83384 0.93225 0.92940 1.91515 1.47645 1.87522 1.84212 1.20628 0.97885 1.05625 0.99291 1.16987 0.91129 0.88899 0.88253 1.42507 1.31593 1.34650 1.30450 1.20582 0.93693 1.00267 1.00876 1.98367 1.35411 1.87357 1.81992 1.67686 1.09438 1.28255 1.18646 0.88953 0.82586 0.81610 0.83467 0.80494 0.76388 0.74794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.43 13.92 21.84 0.30 -42.13 16 2 C 0.06 3.38 5.52 85.30 0.47 3.85 16 3 Si 1.02 47.90 25.41 68.60 1.74 49.64 16 4 H -0.24 -10.75 5.65 99.48 0.56 -10.19 16 5 H -0.32 -14.80 7.11 99.48 0.71 -14.10 16 6 H -0.29 -14.69 6.75 99.48 0.67 -14.02 16 7 C -0.42 -22.28 9.69 23.47 0.23 -22.05 16 8 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 9 C 0.19 9.44 6.21 40.24 0.25 9.68 16 10 C -0.05 -2.16 10.98 85.33 0.94 -1.22 16 11 N -0.43 -19.12 10.47 -192.05 -2.01 -21.13 16 12 C -0.08 -3.45 10.68 85.06 0.91 -2.55 16 13 C 0.15 6.34 5.81 42.14 0.24 6.58 16 14 C 0.03 1.23 5.61 -20.05 -0.11 1.12 16 15 C -0.19 -5.67 9.46 22.56 0.21 -5.45 16 16 C 0.15 3.85 7.29 22.32 0.16 4.02 16 17 F -0.13 -3.10 17.26 44.97 0.78 -2.32 16 18 C -0.21 -4.45 9.86 22.48 0.22 -4.23 16 19 C 0.26 6.33 6.75 38.17 0.26 6.59 16 20 N -0.85 -14.97 9.05 -51.38 -0.46 -15.44 16 21 C -0.12 -4.03 6.35 22.68 0.14 -3.89 16 22 Cl -0.06 -2.19 24.26 -2.72 -0.07 -2.25 16 23 N -0.52 -25.03 3.97 -177.66 -0.71 -25.74 16 24 H 0.30 14.23 8.29 -92.71 -0.77 13.47 16 25 H 0.16 6.68 8.06 -2.91 -0.02 6.66 16 26 H 0.17 5.73 8.03 -2.91 -0.02 5.70 16 27 H 0.15 4.16 8.03 -2.91 -0.02 4.14 16 28 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 29 H 0.41 7.52 7.50 -92.71 -0.69 6.83 16 30 H 0.42 4.27 8.84 -92.71 -0.82 3.45 16 Total: -1.00 -60.86 282.91 3.04 -57.82 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -0.46 Total: 9.08 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.92 Total: -7.54 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -2.88 Total: -104.43 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.74 Total: 49.64 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.25 kcal Total: -60.86 3.04 -57.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245463890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.903 kcal (2) G-P(sol) polarization free energy of solvation -60.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds