Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47563 * 239.99928 * 3 2 1 5 5 H 1.48501 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46899 * 120.00116 * 3 2 1 7 7 C 1.40171 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.40783 * 119.99608 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29195 * 351.72066 * 9 7 2 11 11 C 1.31600 * 119.90189 * 179.97438 * 10 9 7 12 12 C 1.39194 * 120.50920 * 0.02562 * 11 10 9 13 13 N 1.32005 * 120.59186 * 359.97438 * 12 11 10 14 14 C 1.32875 * 120.07487 * 0.02562 * 13 12 11 15 15 C 1.47760 * 120.25127 * 179.97438 * 14 13 12 16 16 C 1.39762 * 120.11575 * 126.34105 * 15 14 13 17 17 C 1.38127 * 119.97604 * 179.72557 * 16 15 14 18 18 F 1.35093 * 119.89503 * 180.30018 * 17 16 15 19 19 C 1.38562 * 120.20626 * 0.55028 * 17 16 15 20 20 C 1.38932 * 120.22738 * 359.72716 * 19 17 16 21 21 N 1.39773 * 119.98469 * 180.02562 * 20 19 17 22 22 C 1.38760 * 120.02451 * 359.97438 * 20 19 17 23 23 Cl 1.73605 * 120.10345 * 179.97438 * 22 20 19 24 24 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.74508 * 179.72371 * 11 10 9 26 26 H 1.08005 * 119.71109 * 179.97438 * 12 11 10 27 27 H 1.08007 * 120.01218 * 359.97438 * 16 15 14 28 28 H 1.08000 * 119.88602 * 179.70606 * 19 17 16 29 29 H 0.97003 * 119.99833 * 179.97438 * 21 20 19 30 30 H 0.96998 * 120.00288 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6965 -1.2124 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0078 -1.2139 -0.0005 8 1 3.0878 -1.2138 -0.0010 9 6 1.3038 -2.4331 -0.0016 10 7 -0.0255 -2.4460 0.1644 11 6 -0.6760 -3.5900 0.1616 12 6 0.0067 -4.7906 -0.0123 13 7 1.3163 -4.8009 -0.1776 14 6 1.9963 -3.6593 -0.1787 15 6 3.4624 -3.6664 -0.3628 16 6 4.0474 -2.8843 -1.3625 17 6 5.4186 -2.8887 -1.5284 18 9 5.9828 -2.1274 -2.4913 19 6 6.2169 -3.6755 -0.7137 20 6 5.6439 -4.4607 0.2790 21 7 6.4540 -5.2520 1.0983 22 6 4.2679 -4.4588 0.4580 23 17 3.5497 -5.4396 1.6973 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7470 -3.5978 0.3002 26 1 -0.5400 -5.7221 -0.0120 27 1 3.4278 -2.2735 -2.0025 28 1 7.2881 -3.6786 -0.8510 29 1 6.0542 -5.8000 1.7917 30 1 7.4159 -5.2532 0.9735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245463922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = 10.855892 kcal Electronic energy + Delta-G solvation = -20583.814692 eV Core-core repulsion = 17125.860326 eV Total energy + Delta-G solvation = -3457.954365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.49817 -39.40139 -38.35521 -35.70699 -34.46939 -34.15952 -32.17145 -31.06249 -28.94540 -28.13502 -26.19121 -23.72536 -22.22052 -21.67142 -20.87355 -17.72979 -17.45538 -17.11998 -16.12599 -16.03238 -15.18894 -15.07571 -14.99260 -14.85978 -14.50889 -14.09789 -13.22864 -12.95108 -12.84269 -12.55832 -12.23634 -11.74849 -11.56191 -11.40087 -11.24657 -11.01848 -10.79116 -10.49865 -10.24814 -9.99607 -9.79480 -9.58811 -9.17581 -8.35258 -7.73515 -7.46223 -7.29022 -6.64962 -4.80051 1.43763 1.77144 2.46869 2.81307 2.91697 2.96976 3.00039 3.15395 3.76839 3.87290 4.03347 4.53762 4.76947 5.03307 5.47102 5.59045 5.62270 5.87366 5.90741 6.04057 6.14063 6.27653 6.44986 6.56664 6.77466 6.83810 6.91297 7.10564 7.15571 7.53424 7.57488 7.83110 7.94174 8.26685 8.53558 9.14435 9.72300 9.98037 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.008074 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.454889 B = 3467.284033 C = 4904.962430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.097 0.903 9 C 0.227 3.773 10 N -0.452 5.452 11 C 0.093 3.907 12 C -0.116 4.116 13 N -0.390 5.390 14 C -0.044 4.044 15 C 0.117 3.883 16 C -0.181 4.181 17 C 0.143 3.857 18 F -0.142 7.142 19 C -0.246 4.246 20 C 0.246 3.754 21 N -0.873 5.873 22 C -0.113 4.113 23 Cl -0.063 7.063 24 H 0.281 0.719 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.401 0.599 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -3.882 0.874 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.162 4.162 3 Si 0.732 3.268 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.428 4.428 8 H 0.115 0.885 9 C 0.103 3.897 10 N -0.168 5.168 11 C -0.079 4.079 12 C -0.279 4.279 13 N -0.102 5.102 14 C -0.190 4.190 15 C 0.114 3.886 16 C -0.202 4.202 17 C 0.123 3.877 18 F -0.120 7.120 19 C -0.270 4.270 20 C 0.141 3.859 21 N -0.414 5.414 22 C -0.146 4.146 23 Cl -0.035 7.035 24 H 0.092 0.908 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.150 0.850 29 H 0.231 0.769 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.197 -3.727 0.935 9.053 hybrid contribution 0.445 0.493 0.213 0.698 sum 8.642 -3.234 1.148 9.298 Atomic orbital electron populations 1.70027 1.07491 1.28990 1.25672 1.26211 0.94994 1.01638 0.93380 0.86322 0.80259 0.79633 0.80631 1.18222 1.19855 1.18418 1.19789 0.95160 0.89051 1.38808 0.88523 1.19140 0.88889 0.91975 0.89696 1.69548 1.07391 1.24750 1.15085 1.23564 0.99961 0.90383 0.93990 1.22555 0.91016 0.97850 1.16439 1.67715 1.08165 1.28890 1.05463 1.19776 0.91304 0.90805 1.17143 1.17756 0.91464 0.89695 0.89713 1.21039 0.92391 1.04899 1.01912 1.17187 0.90993 0.91899 0.87627 1.91460 1.85535 1.73711 1.61307 1.20144 0.99790 1.05593 1.01465 1.16897 0.88270 0.90581 0.90200 1.42441 1.08491 1.51009 1.39428 1.20457 0.90216 1.04563 0.99326 1.98302 1.83624 1.69262 1.52266 0.90783 0.85175 0.85373 0.83802 0.85026 0.76945 0.77417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.48 11.52 55.56 0.64 -16.84 16 2 C 0.07 1.57 5.49 -17.31 -0.10 1.47 16 3 Si 0.91 17.64 29.56 -169.99 -5.02 12.61 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.40 -9.96 7.93 -37.90 -0.30 -10.26 16 8 H 0.10 2.30 5.79 -52.49 -0.30 1.99 16 9 C 0.23 5.91 6.53 -84.55 -0.55 5.36 16 10 N -0.45 -11.84 8.09 -10.73 -0.09 -11.93 16 11 C 0.09 2.14 11.22 -17.30 -0.19 1.95 16 12 C -0.12 -2.59 11.22 -17.12 -0.19 -2.78 16 13 N -0.39 -9.30 9.34 -8.97 -0.08 -9.38 16 14 C -0.04 -1.08 5.74 -82.11 -0.47 -1.55 16 15 C 0.12 2.52 4.98 -104.91 -0.52 1.99 16 16 C -0.18 -3.61 7.72 -39.05 -0.30 -3.91 16 17 C 0.14 2.51 7.28 -39.50 -0.29 2.22 16 18 F -0.14 -2.41 17.26 2.25 0.04 -2.37 16 19 C -0.25 -3.80 9.86 -39.20 -0.39 -4.19 16 20 C 0.25 3.94 6.75 -83.79 -0.57 3.37 16 21 N -0.87 -10.45 9.05 32.41 0.29 -10.16 16 22 C -0.11 -2.18 6.36 -38.86 -0.25 -2.43 16 23 Cl -0.06 -1.17 25.85 -51.86 -1.34 -2.51 16 24 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 25 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 26 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 27 H 0.14 2.96 7.59 -52.48 -0.40 2.56 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.40 4.63 7.49 -40.82 -0.31 4.32 16 30 H 0.40 3.54 8.84 -40.82 -0.36 3.17 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -28.38 285.26 -7.15 -35.53 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.77 Total: 9.49 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.12 Total: -8.74 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.76 Total: -48.32 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.02 Total: 12.61 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.34 Total: -2.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.38 -7.15 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245463922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.390 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds