Wall clock time and date at job start Tue Mar 31 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47563 * 239.99928 * 3 2 1 5 5 H 1.48501 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46899 * 120.00116 * 3 2 1 7 7 C 1.40171 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.40783 * 119.99608 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29195 * 351.72066 * 9 7 2 11 11 C 1.31600 * 119.90189 * 179.97438 * 10 9 7 12 12 C 1.39194 * 120.50920 * 0.02562 * 11 10 9 13 13 N 1.32005 * 120.59186 * 359.97438 * 12 11 10 14 14 C 1.32875 * 120.07487 * 0.02562 * 13 12 11 15 15 C 1.47760 * 120.25127 * 179.97438 * 14 13 12 16 16 C 1.39762 * 120.11575 * 126.34105 * 15 14 13 17 17 C 1.38127 * 119.97604 * 179.72557 * 16 15 14 18 18 F 1.35093 * 119.89503 * 180.30018 * 17 16 15 19 19 C 1.38562 * 120.20626 * 0.55028 * 17 16 15 20 20 C 1.38932 * 120.22738 * 359.72716 * 19 17 16 21 21 N 1.39773 * 119.98469 * 180.02562 * 20 19 17 22 22 C 1.38760 * 120.02451 * 359.97438 * 20 19 17 23 23 Cl 1.73605 * 120.10345 * 179.97438 * 22 20 19 24 24 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.74508 * 179.72371 * 11 10 9 26 26 H 1.08005 * 119.71109 * 179.97438 * 12 11 10 27 27 H 1.08007 * 120.01218 * 359.97438 * 16 15 14 28 28 H 1.08000 * 119.88602 * 179.70606 * 19 17 16 29 29 H 0.97003 * 119.99833 * 179.97438 * 21 20 19 30 30 H 0.96998 * 120.00288 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6965 -1.2124 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0078 -1.2139 -0.0005 8 1 3.0878 -1.2138 -0.0010 9 6 1.3038 -2.4331 -0.0016 10 7 -0.0255 -2.4460 0.1644 11 6 -0.6760 -3.5900 0.1616 12 6 0.0067 -4.7906 -0.0123 13 7 1.3163 -4.8009 -0.1776 14 6 1.9963 -3.6593 -0.1787 15 6 3.4624 -3.6664 -0.3628 16 6 4.0474 -2.8843 -1.3625 17 6 5.4186 -2.8887 -1.5284 18 9 5.9828 -2.1274 -2.4913 19 6 6.2169 -3.6755 -0.7137 20 6 5.6439 -4.4607 0.2790 21 7 6.4540 -5.2520 1.0983 22 6 4.2679 -4.4588 0.4580 23 17 3.5497 -5.4396 1.6973 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7470 -3.5978 0.3002 26 1 -0.5400 -5.7221 -0.0120 27 1 3.4278 -2.2735 -2.0025 28 1 7.2881 -3.6786 -0.8510 29 1 6.0542 -5.8000 1.7917 30 1 7.4159 -5.2532 0.9735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245463922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:52 Heat of formation + Delta-G solvation = -6.920529 kcal Electronic energy + Delta-G solvation = -20584.585535 eV Core-core repulsion = 17125.860326 eV Total energy + Delta-G solvation = -3458.725209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86776 -41.06260 -39.86167 -37.14894 -36.01568 -35.73040 -33.90702 -32.69214 -30.50953 -29.49071 -27.98306 -25.34441 -23.94503 -23.12975 -22.44240 -19.54712 -18.81084 -18.45855 -17.80406 -17.45910 -16.77357 -16.55708 -16.50058 -16.16918 -15.99383 -15.67697 -14.86681 -14.46792 -14.36401 -14.08819 -13.77791 -13.32840 -13.22748 -12.99251 -12.79572 -12.38849 -12.36560 -12.05893 -11.78868 -11.58768 -11.42606 -11.33831 -10.94453 -9.93929 -9.46992 -9.18845 -8.55499 -8.42133 -6.64450 -0.03272 0.33833 0.74728 1.18125 1.37614 1.38225 1.50003 1.53994 2.16135 2.59052 2.71617 2.76689 3.37806 3.59071 3.82973 4.10668 4.16029 4.19782 4.39776 4.52910 4.62379 4.76742 4.80297 5.04283 5.11048 5.15189 5.25658 5.50341 5.76781 5.80767 6.11470 6.36482 6.46106 6.70989 6.92522 7.33333 7.90181 8.25101 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.008074 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.454889 B = 3467.284033 C = 4904.962430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.026 3.974 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.100 0.900 9 C 0.198 3.802 10 N -0.487 5.487 11 C 0.081 3.919 12 C -0.118 4.118 13 N -0.404 5.404 14 C -0.048 4.048 15 C 0.088 3.912 16 C -0.199 4.199 17 C 0.147 3.853 18 F -0.137 7.137 19 C -0.227 4.227 20 C 0.259 3.741 21 N -0.852 5.852 22 C -0.130 4.130 23 Cl -0.065 7.065 24 H 0.287 0.713 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.124 0.876 28 H 0.173 0.827 29 H 0.405 0.595 30 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.880 -4.138 1.153 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.451 4.451 8 H 0.118 0.882 9 C 0.073 3.927 10 N -0.204 5.204 11 C -0.090 4.090 12 C -0.280 4.280 13 N -0.116 5.116 14 C -0.194 4.194 15 C 0.085 3.915 16 C -0.221 4.221 17 C 0.126 3.874 18 F -0.116 7.116 19 C -0.251 4.251 20 C 0.150 3.850 21 N -0.393 5.393 22 C -0.163 4.163 23 Cl -0.037 7.037 24 H 0.098 0.902 25 H 0.177 0.823 26 H 0.178 0.822 27 H 0.142 0.858 28 H 0.190 0.810 29 H 0.236 0.764 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.616 -4.034 1.229 11.423 hybrid contribution -0.240 0.412 0.129 0.494 sum 10.376 -3.622 1.358 11.074 Atomic orbital electron populations 1.70098 1.08971 1.30219 1.26697 1.27061 0.95709 1.04649 0.92425 0.85301 0.79006 0.75377 0.80632 1.17765 1.18697 1.18051 1.20023 0.95456 0.89699 1.39972 0.88236 1.19562 0.89340 0.93272 0.90504 1.69494 1.07994 1.26390 1.16500 1.24054 1.01354 0.90025 0.93560 1.23089 0.90936 0.98961 1.15033 1.67800 1.08797 1.28877 1.06148 1.20128 0.92904 0.90331 1.16055 1.17737 0.90421 0.91807 0.91528 1.20865 0.93571 1.05446 1.02214 1.17187 0.90224 0.92051 0.87899 1.91470 1.85227 1.73680 1.61220 1.20482 1.01462 1.03483 0.99660 1.16911 0.87356 0.90405 0.90319 1.42404 1.09289 1.49421 1.38203 1.20569 0.91480 1.04761 0.99445 1.98291 1.83997 1.69169 1.52193 0.90162 0.82344 0.82242 0.85809 0.80960 0.76390 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.85 11.52 21.86 0.25 -37.59 16 2 C 0.03 1.27 5.49 85.33 0.47 1.74 16 3 Si 0.98 36.38 29.56 68.60 2.03 38.41 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.42 -21.79 7.93 23.36 0.19 -21.60 16 8 H 0.10 4.89 5.79 -2.91 -0.02 4.88 16 9 C 0.20 10.66 6.53 40.36 0.26 10.93 16 10 N -0.49 -26.37 8.09 -187.85 -1.52 -27.89 16 11 C 0.08 3.77 11.22 84.96 0.95 4.72 16 12 C -0.12 -5.29 11.22 84.90 0.95 -4.34 16 13 N -0.40 -19.49 9.34 -182.30 -1.70 -21.19 16 14 C -0.05 -2.40 5.74 42.42 0.24 -2.16 16 15 C 0.09 3.84 4.98 -20.05 -0.10 3.74 16 16 C -0.20 -8.04 7.72 22.61 0.17 -7.87 16 17 C 0.15 4.91 7.28 22.32 0.16 5.07 16 18 F -0.14 -4.42 17.26 44.97 0.78 -3.64 16 19 C -0.23 -6.22 9.86 22.51 0.22 -6.00 16 20 C 0.26 7.54 6.75 38.17 0.26 7.79 16 21 N -0.85 -17.21 9.05 -51.39 -0.46 -17.67 16 22 C -0.13 -4.88 6.36 22.74 0.14 -4.73 16 23 Cl -0.07 -2.37 25.85 -2.72 -0.07 -2.44 16 24 H 0.29 13.21 8.29 -92.71 -0.77 12.44 16 25 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 26 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 27 H 0.12 5.37 7.59 -2.91 -0.02 5.35 16 28 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.41 8.06 7.49 -92.71 -0.69 7.36 16 30 H 0.42 5.43 8.84 -92.71 -0.82 4.61 16 Total: -1.00 -63.21 285.26 2.95 -60.26 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.27 Total: 24.48 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 3.93 Total: -12.72 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -3.44 Total: -104.34 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.07 Total: -2.44 kcal Total: -63.21 2.95 -60.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245463922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.336 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds