Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30661 * 1 3 3 Si 1.86810 * 119.99500 * 2 1 4 4 H 1.48498 * 109.47065 * 239.72472 * 3 2 1 5 5 H 1.48498 * 109.46939 * 359.72477 * 3 2 1 6 6 H 1.48499 * 109.47024 * 119.72650 * 3 2 1 7 7 C 1.40135 * 120.00343 * 179.72671 * 2 1 3 8 8 H 1.08000 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.41068 * 119.99828 * 0.02562 * 7 2 1 10 10 N 1.33654 * 119.13308 * 359.72289 * 9 7 2 11 11 C 1.31574 * 120.82846 * 179.75434 * 10 9 7 12 12 C 1.40445 * 119.09550 * 0.52038 * 11 10 9 13 13 C 1.47914 * 120.79597 * 179.76576 * 12 11 10 14 14 C 1.39719 * 120.10922 * 129.96895 * 13 12 11 15 15 C 1.38134 * 119.98071 * 180.02562 * 14 13 12 16 16 F 1.35097 * 119.89911 * 179.97438 * 15 14 13 17 17 C 1.38568 * 120.19646 * 0.02562 * 15 14 13 18 18 C 1.38948 * 120.22115 * 0.02562 * 17 15 14 19 19 N 1.39753 * 119.99287 * 179.97438 * 18 17 15 20 20 C 1.38755 * 120.01364 * 359.68475 * 18 17 15 21 21 Cl 1.73604 * 120.09990 * 180.29166 * 20 18 17 22 22 C 1.40446 * 118.41565 * 359.73556 * 12 11 10 23 23 N 1.31579 * 119.09010 * 0.02562 * 22 12 11 24 24 H 0.97000 * 120.00650 * 0.27129 * 1 2 3 25 25 H 1.08006 * 120.45520 * 180.26107 * 11 10 9 26 26 H 1.08000 * 120.01128 * 0.03497 * 14 13 12 27 27 H 1.07999 * 119.88489 * 180.02562 * 17 15 14 28 28 H 0.97002 * 119.99973 * 359.97438 * 19 18 17 29 29 H 0.97001 * 120.00501 * 180.02562 * 19 18 17 30 30 H 1.07995 * 120.45367 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6179 0.0000 4 1 3.0993 1.6937 -1.2091 5 1 1.2754 2.7465 -0.0067 6 1 3.0892 1.6995 1.2158 7 6 2.0074 -1.2135 0.0058 8 1 3.0874 -1.2134 0.0054 9 6 1.3020 -2.4352 0.0111 10 7 -0.0343 -2.4150 0.0161 11 6 -0.7256 -3.5346 0.0163 12 6 -0.0402 -4.7604 0.0222 13 6 -0.7797 -6.0414 0.0278 14 6 -0.4573 -7.0409 -0.8938 15 6 -1.1499 -8.2360 -0.8865 16 9 -0.8371 -9.2010 -1.7787 17 6 -2.1652 -8.4475 0.0324 18 6 -2.4935 -7.4589 0.9519 19 7 -3.5187 -7.6771 1.8762 20 6 -1.7995 -6.2573 0.9565 21 17 -2.2027 -5.0235 2.1093 22 6 1.3641 -4.7410 0.0221 23 7 1.9878 -3.5824 0.0169 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8054 -3.5112 0.0161 26 1 0.3334 -6.8791 -1.6115 27 1 -2.7032 -9.3840 0.0338 28 1 -4.0013 -8.5185 1.8756 29 1 -3.7482 -6.9869 2.5180 30 1 1.9243 -5.6642 0.0261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245467646.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -4.718716 kcal Electronic energy + Delta-G solvation = -19904.776064 eV Core-core repulsion = 16446.146333 eV Total energy + Delta-G solvation = -3458.629731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89596 -41.02829 -39.96079 -37.23787 -36.15728 -35.38399 -33.79740 -32.96320 -30.61688 -29.60809 -27.96365 -24.80272 -24.50303 -23.09762 -22.45605 -19.82613 -18.74193 -18.46761 -17.84112 -17.50227 -16.95841 -16.56995 -16.31264 -16.18273 -16.13753 -15.24435 -14.92281 -14.55906 -14.39786 -14.17953 -13.98673 -13.42530 -13.10746 -12.90998 -12.81227 -12.67411 -12.40434 -11.98488 -11.82876 -11.64484 -11.29183 -11.08468 -11.00362 -10.14247 -9.45605 -9.12016 -8.61125 -8.47294 -6.77043 -0.08150 0.30716 0.84195 1.08704 1.32360 1.40491 1.53816 1.54662 2.18550 2.54006 2.69940 2.75221 3.40119 3.70322 3.89447 3.98208 4.02965 4.11927 4.19372 4.40071 4.52094 4.77195 4.82959 4.92702 5.07383 5.16172 5.27949 5.51985 5.71093 5.79199 6.09953 6.34046 6.48123 6.55937 6.87808 7.14079 8.17441 8.30973 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.004356 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.705431 B = 6425.857428 C = 7227.712467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.023 3.977 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.420 4.420 8 H 0.094 0.906 9 C 0.357 3.643 10 N -0.539 5.539 11 C 0.186 3.814 12 C -0.321 4.321 13 C 0.088 3.912 14 C -0.214 4.214 15 C 0.155 3.845 16 F -0.138 7.138 17 C -0.235 4.235 18 C 0.266 3.734 19 N -0.853 5.853 20 C -0.147 4.147 21 Cl -0.071 7.071 22 C 0.183 3.817 23 N -0.619 5.619 24 H 0.288 0.712 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.168 0.832 28 H 0.417 0.583 29 H 0.406 0.594 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -11.833 2.318 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.202 4.202 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.453 4.453 8 H 0.112 0.888 9 C 0.123 3.877 10 N -0.255 5.255 11 C 0.011 3.989 12 C -0.330 4.330 13 C 0.085 3.915 14 C -0.236 4.236 15 C 0.135 3.865 16 F -0.116 7.116 17 C -0.258 4.258 18 C 0.157 3.843 19 N -0.394 5.394 20 C -0.179 4.179 21 Cl -0.043 7.043 22 C 0.010 3.990 23 N -0.338 5.338 24 H 0.099 0.901 25 H 0.157 0.843 26 H 0.153 0.847 27 H 0.185 0.815 28 H 0.249 0.751 29 H 0.236 0.764 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.324 -10.615 2.397 13.118 hybrid contribution -0.408 -0.280 0.140 0.514 sum -7.731 -10.896 2.537 13.599 Atomic orbital electron populations 1.70174 1.09034 1.30196 1.26189 1.27131 0.95897 1.04758 0.92434 0.84987 0.78527 0.74247 0.80327 1.18051 1.18527 1.18156 1.19760 0.95254 0.88991 1.41333 0.88832 1.20336 0.86585 0.91776 0.89002 1.69324 1.08103 1.28072 1.20039 1.23257 0.99419 0.87788 0.88425 1.19731 0.95130 0.93245 1.24922 1.17909 0.91099 0.91607 0.90895 1.20938 1.05654 0.93309 1.03670 1.17246 0.95376 0.85310 0.88577 1.91487 1.92159 1.61859 1.66127 1.20486 1.03695 1.01971 0.99697 1.16937 0.87918 0.90015 0.89435 1.42498 1.37410 1.22544 1.36940 1.20602 1.05041 0.92229 1.00005 1.98332 1.93024 1.54017 1.58909 1.23150 0.90881 0.96071 0.88879 1.68671 1.41177 0.99055 1.24909 0.90138 0.84336 0.84737 0.81462 0.75148 0.76358 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.40 11.40 21.85 0.25 -38.15 16 2 C 0.02 1.13 5.50 85.33 0.47 1.60 16 3 Si 1.00 36.89 29.56 68.60 2.03 38.92 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.42 -23.14 9.35 23.43 0.22 -22.92 16 8 H 0.09 4.95 7.85 -2.91 -0.02 4.93 16 9 C 0.36 20.43 7.35 134.90 0.99 21.43 16 10 N -0.54 -30.11 7.83 -193.17 -1.51 -31.62 16 11 C 0.19 8.99 9.50 85.27 0.81 9.80 16 12 C -0.32 -13.86 5.14 -19.64 -0.10 -13.96 16 13 C 0.09 3.10 5.52 -20.02 -0.11 2.99 16 14 C -0.21 -6.66 9.53 22.60 0.22 -6.44 16 15 C 0.16 4.11 7.29 22.32 0.16 4.27 16 16 F -0.14 -3.57 17.26 44.97 0.78 -2.79 16 17 C -0.23 -5.19 9.87 22.52 0.22 -4.97 16 18 C 0.27 6.38 6.75 38.17 0.26 6.64 16 19 N -0.85 -14.22 9.04 -51.39 -0.46 -14.69 16 20 C -0.15 -4.57 6.32 22.73 0.14 -4.43 16 21 Cl -0.07 -2.32 24.70 -2.72 -0.07 -2.38 16 22 C 0.18 8.32 10.85 85.27 0.93 9.25 16 23 N -0.62 -33.01 10.34 -193.17 -2.00 -35.01 16 24 H 0.29 13.36 8.29 -92.71 -0.77 12.60 16 25 H 0.14 6.21 7.25 -2.91 -0.02 6.19 16 26 H 0.13 4.14 8.05 -2.91 -0.02 4.12 16 27 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.42 4.19 8.84 -92.71 -0.82 3.37 16 29 H 0.41 6.81 7.49 -92.71 -0.69 6.12 16 30 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -64.68 288.30 2.94 -61.74 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.28 Total: 20.72 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.21 Total: 3.25 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -3.72 Total: -119.46 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.38 kcal Total: -64.68 2.94 -61.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245467646.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.019 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds