Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47273 * 274.73797 * 3 2 1 5 5 H 1.48498 * 109.47358 * 34.74119 * 3 2 1 6 6 H 1.48498 * 109.47120 * 154.74124 * 3 2 1 7 7 C 1.39890 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99998 * 163.47446 * 7 2 1 9 9 C 1.41367 * 120.00228 * 343.47519 * 7 2 1 10 10 C 1.40812 * 120.57636 * 155.72295 * 9 7 2 11 11 N 1.31505 * 120.70146 * 180.02562 * 10 9 7 12 12 C 1.32154 * 122.07839 * 0.02562 * 11 10 9 13 13 F 1.35101 * 119.46065 * 179.97438 * 12 11 10 14 14 C 1.40085 * 121.07886 * 359.97438 * 12 11 10 15 15 C 1.48358 * 120.42167 * 179.97438 * 14 12 11 16 16 C 1.39196 * 120.44959 * 129.74301 * 15 14 12 17 17 N 1.31806 * 120.70613 * 179.75345 * 16 15 14 18 18 C 1.32441 * 121.75999 * 0.54283 * 17 16 15 19 19 N 1.38995 * 119.57708 * 179.75350 * 18 17 16 20 20 C 1.39297 * 120.84109 * 359.72071 * 18 17 16 21 21 Cl 1.73597 * 120.39894 * 180.02562 * 20 18 17 22 22 C 1.38185 * 119.20453 * 0.02562 * 20 18 17 23 23 C 1.39010 * 119.16092 * 0.02562 * 14 12 11 24 24 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.64513 * 359.74917 * 10 9 7 26 26 H 1.07995 * 119.64823 * 0.02745 * 16 15 14 27 27 H 0.97000 * 119.99887 * 179.97438 * 19 18 17 28 28 H 0.96997 * 120.00469 * 359.96311 * 19 18 17 29 29 H 1.08005 * 120.80599 * 179.97438 * 22 20 18 30 30 H 1.08004 * 120.93677 * 179.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3899 2.1043 -1.3953 5 1 1.4937 2.6217 0.7978 6 1 3.5866 1.4134 0.5974 7 6 2.0081 -1.2115 -0.0005 8 1 3.0547 -1.2307 -0.2666 9 6 1.3451 -2.4107 0.3471 10 6 1.8237 -3.6528 -0.1120 11 7 1.2086 -4.7698 0.2095 12 6 0.1264 -4.7818 0.9679 13 9 -0.4636 -5.9603 1.2651 14 6 -0.4190 -3.5926 1.4687 15 6 -1.6348 -3.6231 2.3183 16 6 -1.6621 -2.9480 3.5353 17 7 -2.7412 -2.9677 4.2918 18 6 -3.8302 -3.6320 3.9358 19 7 -4.9412 -3.6262 4.7710 20 6 -3.8766 -4.3358 2.7346 21 17 -5.3102 -5.2022 2.2789 22 6 -2.7677 -4.3362 1.9101 23 6 0.1928 -2.3836 1.1585 24 1 -0.4851 0.8400 0.0004 25 1 2.7027 -3.6881 -0.7385 26 1 -0.7912 -2.3986 3.8610 27 1 -5.7421 -4.1104 4.5161 28 1 -4.9156 -3.1382 5.6089 29 1 -2.7751 -4.8735 0.9732 30 1 -0.2036 -1.4496 1.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245565753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = 4.889450 kcal Electronic energy + Delta-G solvation = -20091.268145 eV Core-core repulsion = 16633.055055 eV Total energy + Delta-G solvation = -3458.213090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.62125 -40.04808 -38.28958 -36.49296 -34.89213 -34.23135 -32.40706 -31.18263 -30.27287 -27.72743 -25.60333 -23.70236 -23.12103 -21.82985 -20.88360 -17.76859 -17.45687 -17.37107 -16.68006 -15.92876 -15.83450 -15.00756 -14.96376 -14.60695 -14.33419 -14.20967 -13.46982 -13.12914 -12.68145 -12.42518 -12.24918 -11.93002 -11.88202 -11.83872 -11.43791 -11.27247 -11.08950 -10.81776 -10.69253 -10.20849 -9.56114 -9.51011 -9.38865 -8.58539 -8.44674 -7.88182 -7.30331 -7.06352 -4.68195 1.25472 1.45024 2.17181 2.37077 2.64616 2.93463 2.94947 3.01072 3.50333 3.71204 3.99836 4.32343 4.73131 4.99970 5.09604 5.27122 5.29138 5.40764 5.73123 6.00123 6.04588 6.37826 6.45764 6.61733 6.74920 6.86893 6.91246 7.20253 7.37502 7.44328 7.56316 7.70214 8.14896 8.26774 8.41495 8.43327 9.16805 9.84680 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.004925 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.741008 B = 5683.506987 C = 6661.380462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.056 3.944 10 C 0.011 3.989 11 N -0.488 5.488 12 C 0.161 3.839 13 F -0.146 7.146 14 C -0.091 4.091 15 C -0.107 4.107 16 C 0.166 3.834 17 N -0.529 5.529 18 C 0.405 3.595 19 N -0.850 5.850 20 C -0.153 4.153 21 Cl -0.073 7.073 22 C -0.007 4.007 23 C -0.098 4.098 24 H 0.287 0.713 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.407 0.593 28 H 0.404 0.596 29 H 0.142 0.858 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -1.131 5.832 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.051 3.949 10 C -0.150 4.150 11 N -0.199 5.199 12 C 0.007 3.993 13 F -0.126 7.126 14 C -0.096 4.096 15 C -0.113 4.113 16 C 0.008 3.992 17 N -0.247 5.247 18 C 0.167 3.833 19 N -0.395 5.395 20 C -0.187 4.187 21 Cl -0.044 7.044 22 C -0.033 4.033 23 C -0.123 4.123 24 H 0.099 0.901 25 H 0.156 0.844 26 H 0.182 0.818 27 H 0.238 0.762 28 H 0.234 0.766 29 H 0.160 0.840 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.378 -1.438 6.265 9.785 hybrid contribution -0.599 0.790 -0.424 1.079 sum -7.977 -0.647 5.841 9.908 Atomic orbital electron populations 1.69765 1.07747 1.30180 1.33009 1.26020 0.94856 1.01899 0.91929 0.86165 0.80717 0.79872 0.79397 1.19258 1.19776 1.18065 1.19579 0.97984 0.90420 1.38733 0.89318 1.18480 0.92199 0.93838 0.90364 1.22315 1.02005 0.86563 1.04130 1.66278 1.07540 1.33692 1.12425 1.17525 0.95694 0.79637 1.06397 1.91403 1.82433 1.46566 1.92159 1.18860 0.95704 0.93603 1.01414 1.19411 0.94295 1.01177 0.96412 1.22684 0.94283 0.93332 0.88875 1.67295 0.99693 1.22639 1.35042 1.18002 0.88035 0.90221 0.87021 1.42186 1.13811 1.59493 1.24044 1.21050 0.91549 1.07719 0.98379 1.98315 1.38008 1.75845 1.92272 1.21382 0.89583 0.94235 0.98148 1.21738 0.97190 0.95319 0.98057 0.90138 0.84367 0.81786 0.76213 0.76642 0.83978 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.05 10.90 55.54 0.61 -17.44 16 2 C 0.07 1.61 5.19 -17.35 -0.09 1.52 16 3 Si 0.91 16.59 29.59 -169.99 -5.03 11.56 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.44 -10.17 9.08 -37.77 -0.34 -10.51 16 8 H 0.09 1.93 7.90 -52.48 -0.41 1.52 16 9 C 0.06 1.34 5.59 -106.71 -0.60 0.74 16 10 C 0.01 0.27 10.96 -16.72 -0.18 0.08 16 11 N -0.49 -11.82 10.33 -12.58 -0.13 -11.95 16 12 C 0.16 3.79 8.32 -16.72 -0.14 3.65 16 13 F -0.15 -3.29 15.96 2.25 0.04 -3.26 16 14 C -0.09 -2.02 5.50 -104.75 -0.58 -2.60 16 15 C -0.11 -2.08 5.33 -104.74 -0.56 -2.64 16 16 C 0.17 2.93 10.70 -17.21 -0.18 2.75 16 17 N -0.53 -8.87 10.38 -12.13 -0.13 -9.00 16 18 C 0.41 6.23 7.74 -154.93 -1.20 5.03 16 19 N -0.85 -9.63 9.03 31.17 0.28 -9.35 16 20 C -0.15 -2.43 6.36 -39.21 -0.25 -2.68 16 21 Cl -0.07 -0.96 27.60 -51.86 -1.43 -2.39 16 22 C -0.01 -0.13 8.81 -38.96 -0.34 -0.47 16 23 C -0.10 -2.27 8.30 -38.27 -0.32 -2.59 16 24 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 25 H 0.14 2.90 8.06 -52.49 -0.42 2.48 16 26 H 0.17 2.68 8.05 -52.49 -0.42 2.25 16 27 H 0.41 3.90 7.47 -40.82 -0.30 3.60 16 28 H 0.40 3.87 8.95 -40.82 -0.37 3.50 16 29 H 0.14 2.54 7.86 -52.48 -0.41 2.13 16 30 H 0.14 3.27 6.20 -52.48 -0.33 2.95 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -26.19 289.75 -8.01 -34.20 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -1.80 Total: 10.98 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -4.78 Total: -7.71 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.63 Total: -47.74 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.43 Total: -2.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.19 -8.01 -34.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245565753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.092 kcal (2) G-P(sol) polarization free energy of solvation -26.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds