Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47273 * 274.73797 * 3 2 1 5 5 H 1.48498 * 109.47358 * 34.74119 * 3 2 1 6 6 H 1.48498 * 109.47120 * 154.74124 * 3 2 1 7 7 C 1.39890 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99998 * 163.47446 * 7 2 1 9 9 C 1.41367 * 120.00228 * 343.47519 * 7 2 1 10 10 C 1.40812 * 120.57636 * 155.72295 * 9 7 2 11 11 N 1.31505 * 120.70146 * 180.02562 * 10 9 7 12 12 C 1.32154 * 122.07839 * 0.02562 * 11 10 9 13 13 F 1.35101 * 119.46065 * 179.97438 * 12 11 10 14 14 C 1.40085 * 121.07886 * 359.97438 * 12 11 10 15 15 C 1.48358 * 120.42167 * 179.97438 * 14 12 11 16 16 C 1.39196 * 120.44959 * 129.74301 * 15 14 12 17 17 N 1.31806 * 120.70613 * 179.75345 * 16 15 14 18 18 C 1.32441 * 121.75999 * 0.54283 * 17 16 15 19 19 N 1.38995 * 119.57708 * 179.75350 * 18 17 16 20 20 C 1.39297 * 120.84109 * 359.72071 * 18 17 16 21 21 Cl 1.73597 * 120.39894 * 180.02562 * 20 18 17 22 22 C 1.38185 * 119.20453 * 0.02562 * 20 18 17 23 23 C 1.39010 * 119.16092 * 0.02562 * 14 12 11 24 24 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.64513 * 359.74917 * 10 9 7 26 26 H 1.07995 * 119.64823 * 0.02745 * 16 15 14 27 27 H 0.97000 * 119.99887 * 179.97438 * 19 18 17 28 28 H 0.96997 * 120.00469 * 359.96311 * 19 18 17 29 29 H 1.08005 * 120.80599 * 179.97438 * 22 20 18 30 30 H 1.08004 * 120.93677 * 179.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3899 2.1043 -1.3953 5 1 1.4937 2.6217 0.7978 6 1 3.5866 1.4134 0.5974 7 6 2.0081 -1.2115 -0.0005 8 1 3.0547 -1.2307 -0.2666 9 6 1.3451 -2.4107 0.3471 10 6 1.8237 -3.6528 -0.1120 11 7 1.2086 -4.7698 0.2095 12 6 0.1264 -4.7818 0.9679 13 9 -0.4636 -5.9603 1.2651 14 6 -0.4190 -3.5926 1.4687 15 6 -1.6348 -3.6231 2.3183 16 6 -1.6621 -2.9480 3.5353 17 7 -2.7412 -2.9677 4.2918 18 6 -3.8302 -3.6320 3.9358 19 7 -4.9412 -3.6262 4.7710 20 6 -3.8766 -4.3358 2.7346 21 17 -5.3102 -5.2022 2.2789 22 6 -2.7677 -4.3362 1.9101 23 6 0.1928 -2.3836 1.1585 24 1 -0.4851 0.8400 0.0004 25 1 2.7027 -3.6881 -0.7385 26 1 -0.7912 -2.3986 3.8610 27 1 -5.7421 -4.1104 4.5161 28 1 -4.9156 -3.1382 5.6089 29 1 -2.7751 -4.8735 0.9732 30 1 -0.2036 -1.4496 1.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245565753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = -9.731333 kcal Electronic energy + Delta-G solvation = -20091.902149 eV Core-core repulsion = 16633.055055 eV Total energy + Delta-G solvation = -3458.847094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.40291 -41.38555 -40.01096 -37.67849 -36.17132 -35.95249 -33.79195 -32.70422 -31.97372 -29.16548 -27.37221 -25.14702 -24.53245 -23.54673 -22.47972 -19.38434 -18.76919 -18.60980 -18.44808 -17.60817 -17.34243 -16.58372 -16.47767 -16.06226 -15.62916 -15.57493 -15.02360 -14.63639 -14.20621 -14.11119 -13.90837 -13.62211 -13.49138 -13.10463 -13.05540 -12.82417 -12.36669 -12.24181 -12.03027 -11.77196 -11.21357 -10.90755 -10.71907 -10.24279 -10.18277 -9.57464 -8.77100 -8.66584 -6.47645 -0.11840 0.03971 0.66663 0.86844 1.01320 1.45130 1.51216 1.60539 2.19596 2.38855 2.55475 2.69904 3.28127 3.42270 3.50248 3.67568 3.89826 4.09618 4.26851 4.36388 4.62107 4.67965 4.87185 5.05228 5.13004 5.23656 5.32653 5.61638 5.77452 5.92960 6.11143 6.35865 6.42027 6.63896 6.67530 7.09291 7.35796 8.17789 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.004925 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.741008 B = 5683.506987 C = 6661.380462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.457 4.457 8 H 0.098 0.902 9 C 0.037 3.963 10 C -0.003 4.003 11 N -0.503 5.503 12 C 0.136 3.864 13 F -0.145 7.145 14 C -0.077 4.077 15 C -0.138 4.138 16 C 0.170 3.830 17 N -0.535 5.535 18 C 0.410 3.590 19 N -0.828 5.828 20 C -0.157 4.157 21 Cl -0.046 7.046 22 C -0.012 4.012 23 C -0.113 4.113 24 H 0.296 0.704 25 H 0.155 0.845 26 H 0.172 0.828 27 H 0.418 0.582 28 H 0.416 0.584 29 H 0.136 0.864 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 -0.046 6.680 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.116 0.884 9 C 0.033 3.967 10 C -0.165 4.165 11 N -0.215 5.215 12 C -0.018 4.018 13 F -0.125 7.125 14 C -0.081 4.081 15 C -0.144 4.144 16 C 0.012 3.988 17 N -0.254 5.254 18 C 0.170 3.830 19 N -0.373 5.373 20 C -0.191 4.191 21 Cl -0.018 7.018 22 C -0.038 4.038 23 C -0.139 4.139 24 H 0.107 0.893 25 H 0.173 0.827 26 H 0.189 0.811 27 H 0.251 0.749 28 H 0.248 0.752 29 H 0.154 0.846 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.375 -0.380 7.138 11.011 hybrid contribution -0.476 0.424 -0.650 0.911 sum -8.851 0.044 6.488 10.975 Atomic orbital electron populations 1.69810 1.09167 1.31580 1.32664 1.26847 0.95462 1.04815 0.90813 0.85086 0.79359 0.75374 0.79450 1.18819 1.19217 1.17629 1.19916 0.98572 0.90958 1.39071 0.88421 1.18796 0.92731 0.94496 0.90707 1.22576 1.02732 0.86345 1.04804 1.66249 1.08066 1.34241 1.12901 1.17749 0.96230 0.80221 1.07565 1.91385 1.82416 1.46454 1.92231 1.18967 0.96053 0.92611 1.00458 1.19314 0.94016 1.03771 0.97298 1.22739 0.94936 0.92736 0.88351 1.67368 0.99860 1.23295 1.34830 1.18229 0.88468 0.89120 0.87164 1.42177 1.12842 1.58619 1.23706 1.21031 0.91965 1.07833 0.98230 1.98323 1.36132 1.75203 1.92146 1.21357 0.90070 0.94053 0.98353 1.21715 0.97763 0.95493 0.98886 0.89311 0.82746 0.81113 0.74904 0.75198 0.84595 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.14 10.90 21.82 0.24 -36.91 16 2 C 0.04 1.68 5.19 85.24 0.44 2.13 16 3 Si 0.99 32.98 29.59 68.60 2.03 35.01 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.46 -21.24 9.08 23.44 0.21 -21.03 16 8 H 0.10 4.23 7.90 -2.90 -0.02 4.20 16 9 C 0.04 1.83 5.59 -21.21 -0.12 1.71 16 10 C 0.00 -0.14 10.96 85.37 0.94 0.80 16 11 N -0.50 -24.97 10.33 -193.71 -2.00 -26.97 16 12 C 0.14 6.55 8.32 85.09 0.71 7.25 16 13 F -0.14 -6.70 15.96 44.97 0.72 -5.98 16 14 C -0.08 -3.47 5.50 -19.95 -0.11 -3.58 16 15 C -0.14 -5.41 5.33 -19.94 -0.11 -5.52 16 16 C 0.17 5.98 10.70 84.93 0.91 6.89 16 17 N -0.54 -17.21 10.38 -192.30 -2.00 -19.21 16 18 C 0.41 11.80 7.74 133.09 1.03 12.84 16 19 N -0.83 -16.36 9.03 -55.31 -0.50 -16.86 16 20 C -0.16 -4.76 6.36 22.51 0.14 -4.61 16 21 Cl -0.05 -1.14 27.60 -2.72 -0.08 -1.21 16 22 C -0.01 -0.44 8.81 22.67 0.20 -0.24 16 23 C -0.11 -5.39 8.30 23.12 0.19 -5.20 16 24 H 0.30 12.27 8.30 -92.71 -0.77 11.50 16 25 H 0.16 6.59 8.06 -2.91 -0.02 6.57 16 26 H 0.17 5.60 8.05 -2.91 -0.02 5.58 16 27 H 0.42 6.67 7.47 -92.71 -0.69 5.98 16 28 H 0.42 6.66 8.95 -92.71 -0.83 5.83 16 29 H 0.14 4.94 7.86 -2.91 -0.02 4.91 16 30 H 0.14 6.47 6.20 -2.91 -0.02 6.45 16 Total: -1.00 -55.62 289.75 2.57 -53.05 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.28 Total: 27.64 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.44 Total: -8.57 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -4.26 Total: -99.94 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.72 Total: -5.98 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 2.03 Total: 35.01 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -55.62 2.57 -53.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245565753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.321 kcal (2) G-P(sol) polarization free energy of solvation -55.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds