Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86791 * 120.00025 * 2 1 4 4 H 1.48504 * 109.47570 * 84.75425 * 3 2 1 5 5 H 1.48504 * 109.47107 * 204.75306 * 3 2 1 6 6 H 1.48501 * 109.47391 * 324.75427 * 3 2 1 7 7 C 1.40009 * 119.99436 * 179.71859 * 2 1 3 8 8 H 1.07997 * 120.00431 * 16.21680 * 7 2 1 9 9 C 1.41357 * 119.99618 * 196.20653 * 7 2 1 10 10 C 1.40712 * 119.76318 * 27.54051 * 9 7 2 11 11 C 1.38289 * 119.20017 * 179.74356 * 10 9 7 12 12 C 1.38688 * 118.69641 * 0.51502 * 11 10 9 13 13 C 1.39959 * 119.46290 * 359.74810 * 12 11 10 14 14 C 1.48160 * 119.61259 * 179.97438 * 13 12 11 15 15 C 1.39495 * 120.08715 * 354.32130 * 14 13 12 16 16 C 1.37893 * 119.94308 * 179.79050 * 15 14 13 17 17 Cl 1.73601 * 119.94566 * 180.23361 * 16 15 14 18 18 C 1.39040 * 120.10520 * 0.48682 * 16 15 14 19 19 O 1.35844 * 119.91579 * 179.76455 * 18 16 15 20 20 C 1.38745 * 120.16459 * 359.74550 * 18 16 15 21 21 C 1.38150 * 120.05957 * 0.02562 * 20 18 16 22 22 F 1.35103 * 120.05508 * 179.97438 * 21 20 18 23 23 N 1.32295 * 120.76900 * 359.97438 * 13 12 11 24 24 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.39954 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65321 * 180.25776 * 11 10 9 27 27 H 1.08003 * 120.26741 * 179.72281 * 12 11 10 28 28 H 1.08003 * 120.02726 * 0.02859 * 15 14 13 29 29 H 0.96695 * 114.00117 * 269.97957 * 19 18 16 30 30 H 1.07999 * 119.97504 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3782 2.1104 1.3942 5 1 3.5901 1.4106 -0.5862 6 1 1.4988 2.6181 -0.8080 7 6 2.0075 -1.2126 0.0060 8 1 1.4997 -2.1305 -0.2507 9 6 3.3789 -1.2353 0.3478 10 6 3.9015 -0.2495 1.2052 11 6 5.2437 -0.2859 1.5362 12 6 6.0347 -1.2913 1.0004 13 6 5.4583 -2.2404 0.1485 14 6 6.3003 -3.3155 -0.4262 15 6 7.6792 -3.3120 -0.2153 16 6 8.4595 -4.3164 -0.7479 17 17 10.1748 -4.3154 -0.4804 18 6 7.8754 -5.3271 -1.5032 19 8 8.6484 -6.3121 -2.0301 20 6 6.5050 -5.3323 -1.7198 21 6 5.7161 -4.3320 -1.1855 22 9 4.3817 -4.3369 -1.3968 23 7 4.1704 -2.1888 -0.1495 24 1 -0.4850 0.8400 -0.0004 25 1 3.2611 0.5234 1.6038 26 1 5.6685 0.4564 2.1956 27 1 7.0870 -1.3411 1.2384 28 1 8.1347 -2.5253 0.3679 29 1 8.9861 -6.1163 -2.9148 30 1 6.0545 -6.1187 -2.3073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245667071.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -34.978924 kcal Electronic energy + Delta-G solvation = -20042.420399 eV Core-core repulsion = 16550.185736 eV Total energy + Delta-G solvation = -3492.234663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.36197 -39.82606 -38.65830 -36.76192 -36.38994 -33.90997 -31.79431 -31.37354 -30.39215 -28.71856 -25.79236 -23.79985 -22.82303 -21.27676 -20.98676 -18.78110 -17.95108 -16.78006 -16.50057 -16.22001 -15.89189 -15.30171 -14.87843 -14.78264 -14.43740 -13.91714 -13.67546 -13.20209 -13.12202 -12.89320 -12.64093 -12.36338 -11.84813 -11.57753 -11.42386 -11.27367 -11.13986 -10.85024 -10.73823 -10.43832 -10.04215 -9.51219 -9.17920 -8.72376 -8.50567 -8.11634 -7.53931 -7.10736 -4.75115 0.70458 1.03098 2.01908 2.32123 2.45760 2.96944 3.10989 3.17262 3.43492 3.82134 3.83096 4.38306 4.51690 4.59299 4.74240 5.16222 5.33743 5.43296 5.55503 5.74610 5.83133 5.95873 6.04474 6.15904 6.25936 6.44013 6.61337 6.77485 6.94699 7.23518 7.31384 7.36632 7.60073 8.18533 8.30590 8.55243 9.41426 9.90737 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.004392 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.912310 B = 6373.378717 C = 7179.399060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.086 3.914 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.246 1.246 6 H -0.288 1.288 7 C -0.412 4.412 8 H 0.101 0.899 9 C 0.256 3.744 10 C -0.274 4.274 11 C -0.046 4.046 12 C -0.283 4.283 13 C 0.180 3.820 14 C -0.054 4.054 15 C -0.057 4.057 16 C -0.080 4.080 17 Cl -0.060 7.060 18 C 0.139 3.861 19 O -0.484 6.484 20 C -0.182 4.182 21 C 0.158 3.842 22 F -0.097 7.097 23 N -0.522 5.522 24 H 0.290 0.710 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.150 0.850 29 H 0.393 0.607 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.409 -4.731 -2.744 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.136 4.136 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.169 1.169 6 H -0.215 1.215 7 C -0.443 4.443 8 H 0.119 0.881 9 C 0.131 3.869 10 C -0.297 4.297 11 C -0.069 4.069 12 C -0.306 4.306 13 C 0.037 3.963 14 C -0.056 4.056 15 C -0.077 4.077 16 C -0.108 4.108 17 Cl -0.031 7.031 18 C 0.093 3.907 19 O -0.294 6.294 20 C -0.201 4.201 21 C 0.137 3.863 22 F -0.075 7.075 23 N -0.235 5.235 24 H 0.101 0.899 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.168 0.832 29 H 0.250 0.750 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.665 -5.521 -2.761 14.994 hybrid contribution 0.615 1.647 0.197 1.769 sum 14.280 -3.874 -2.565 15.017 Atomic orbital electron populations 1.69605 1.08007 1.30681 1.33378 1.26132 0.94885 1.01654 0.90944 0.86267 0.81119 0.79528 0.78794 1.19467 1.16938 1.21537 1.19263 0.90784 0.96345 1.37935 0.88125 1.18512 0.93000 0.86948 0.88460 1.21951 0.96131 1.05019 1.06578 1.20886 0.93573 0.96091 0.96400 1.21183 0.99450 1.01125 1.08868 1.19197 0.91105 0.91961 0.94037 1.18871 0.92479 0.95272 0.98966 1.20918 0.91460 0.97248 0.98026 1.21106 0.85802 0.98041 1.05837 1.98354 1.10940 1.98394 1.95440 1.17761 0.88677 0.87763 0.96509 1.84819 1.67741 1.40208 1.36678 1.21244 0.92859 1.00660 1.05372 1.17598 0.78931 0.94012 0.95733 1.91674 1.28311 1.95612 1.91894 1.68341 1.02674 1.27188 1.25314 0.89941 0.87208 0.87355 0.87382 0.83200 0.75049 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.44 13.92 55.55 0.77 -19.67 16 2 C 0.09 2.19 5.44 -17.35 -0.09 2.10 16 3 Si 0.92 20.10 24.38 -169.99 -4.14 15.95 16 4 H -0.27 -5.61 6.69 56.52 0.38 -5.23 16 5 H -0.25 -5.60 6.65 56.52 0.38 -5.22 16 6 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.41 -11.23 9.82 -37.73 -0.37 -11.60 16 8 H 0.10 2.93 8.06 -52.49 -0.42 2.51 16 9 C 0.26 6.66 6.03 -85.01 -0.51 6.14 16 10 C -0.27 -6.47 7.05 -38.63 -0.27 -6.74 16 11 C -0.05 -0.94 10.15 -39.40 -0.40 -1.34 16 12 C -0.28 -5.62 9.47 -38.77 -0.37 -5.98 16 13 C 0.18 3.91 6.73 -82.95 -0.56 3.35 16 14 C -0.05 -0.97 5.88 -104.82 -0.62 -1.58 16 15 C -0.06 -0.83 9.18 -39.24 -0.36 -1.19 16 16 C -0.08 -1.06 6.33 -39.41 -0.25 -1.31 16 17 Cl -0.06 -0.69 28.49 -51.86 -1.48 -2.17 16 18 C 0.14 1.76 6.70 -39.10 -0.26 1.50 16 19 O -0.48 -5.02 12.94 -19.25 -0.25 -5.27 16 20 C -0.18 -2.49 9.95 -39.43 -0.39 -2.89 16 21 C 0.16 2.76 7.27 -39.08 -0.28 2.47 16 22 F -0.10 -1.98 15.32 2.25 0.03 -1.95 16 23 N -0.52 -13.11 8.28 -7.69 -0.06 -13.17 16 24 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 25 H 0.11 2.52 4.21 -52.49 -0.22 2.30 16 26 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.11 1.76 6.21 -52.48 -0.33 1.43 16 28 H 0.15 1.96 6.20 -52.48 -0.33 1.64 16 29 H 0.39 2.22 9.06 45.56 0.41 2.63 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 281.90 15.07 4.25 4.25 Total: -1.00 -29.12 281.90 -6.53 -35.65 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -0.91 Total: 3.47 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -4.74 Total: -17.08 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.71 Total: -32.84 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.25 Total: -5.27 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.14 Total: 15.95 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.12 -6.53 -35.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245667071.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.669 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds