Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86791 * 120.00025 * 2 1 4 4 H 1.48504 * 109.47570 * 84.75425 * 3 2 1 5 5 H 1.48504 * 109.47107 * 204.75306 * 3 2 1 6 6 H 1.48501 * 109.47391 * 324.75427 * 3 2 1 7 7 C 1.40009 * 119.99436 * 179.71859 * 2 1 3 8 8 H 1.07997 * 120.00431 * 16.21680 * 7 2 1 9 9 C 1.41357 * 119.99618 * 196.20653 * 7 2 1 10 10 C 1.40712 * 119.76318 * 27.54051 * 9 7 2 11 11 C 1.38289 * 119.20017 * 179.74356 * 10 9 7 12 12 C 1.38688 * 118.69641 * 0.51502 * 11 10 9 13 13 C 1.39959 * 119.46290 * 359.74810 * 12 11 10 14 14 C 1.48160 * 119.61259 * 179.97438 * 13 12 11 15 15 C 1.39495 * 120.08715 * 354.32130 * 14 13 12 16 16 C 1.37893 * 119.94308 * 179.79050 * 15 14 13 17 17 Cl 1.73601 * 119.94566 * 180.23361 * 16 15 14 18 18 C 1.39040 * 120.10520 * 0.48682 * 16 15 14 19 19 O 1.35844 * 119.91579 * 179.76455 * 18 16 15 20 20 C 1.38745 * 120.16459 * 359.74550 * 18 16 15 21 21 C 1.38150 * 120.05957 * 0.02562 * 20 18 16 22 22 F 1.35103 * 120.05508 * 179.97438 * 21 20 18 23 23 N 1.32295 * 120.76900 * 359.97438 * 13 12 11 24 24 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.39954 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65321 * 180.25776 * 11 10 9 27 27 H 1.08003 * 120.26741 * 179.72281 * 12 11 10 28 28 H 1.08003 * 120.02726 * 0.02859 * 15 14 13 29 29 H 0.96695 * 114.00117 * 269.97957 * 19 18 16 30 30 H 1.07999 * 119.97504 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3782 2.1104 1.3942 5 1 3.5901 1.4106 -0.5862 6 1 1.4988 2.6181 -0.8080 7 6 2.0075 -1.2126 0.0060 8 1 1.4997 -2.1305 -0.2507 9 6 3.3789 -1.2353 0.3478 10 6 3.9015 -0.2495 1.2052 11 6 5.2437 -0.2859 1.5362 12 6 6.0347 -1.2913 1.0004 13 6 5.4583 -2.2404 0.1485 14 6 6.3003 -3.3155 -0.4262 15 6 7.6792 -3.3120 -0.2153 16 6 8.4595 -4.3164 -0.7479 17 17 10.1748 -4.3154 -0.4804 18 6 7.8754 -5.3271 -1.5032 19 8 8.6484 -6.3121 -2.0301 20 6 6.5050 -5.3323 -1.7198 21 6 5.7161 -4.3320 -1.1855 22 9 4.3817 -4.3369 -1.3968 23 7 4.1704 -2.1888 -0.1495 24 1 -0.4850 0.8400 -0.0004 25 1 3.2611 0.5234 1.6038 26 1 5.6685 0.4564 2.1956 27 1 7.0870 -1.3411 1.2384 28 1 8.1347 -2.5253 0.3679 29 1 8.9861 -6.1163 -2.9148 30 1 6.0545 -6.1187 -2.3073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245667071.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -54.856392 kcal Electronic energy + Delta-G solvation = -20043.282351 eV Core-core repulsion = 16550.185736 eV Total energy + Delta-G solvation = -3493.096615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.79525 -41.05630 -40.20744 -37.80556 -37.45185 -35.72421 -33.32974 -33.06792 -31.64174 -30.15374 -27.54371 -25.13775 -24.17524 -22.84934 -22.53428 -19.81460 -19.68446 -18.08274 -17.96074 -17.49557 -17.39741 -16.71076 -16.53688 -16.21150 -15.88900 -15.17601 -14.99525 -14.80909 -14.58668 -14.42524 -13.90667 -13.83900 -13.52806 -13.08847 -12.83891 -12.67210 -12.38281 -12.24353 -12.17846 -11.79276 -11.73424 -11.24411 -10.60258 -10.28967 -9.86890 -9.82484 -9.08224 -8.98566 -6.72305 -0.54568 -0.11639 0.64382 0.84616 0.98744 1.21192 1.37996 1.44527 2.05048 2.16957 2.58998 2.79848 3.24779 3.35650 3.54549 3.57922 3.97156 4.08820 4.32781 4.41959 4.49966 4.60772 4.64842 4.67230 4.86902 5.00639 5.07358 5.19521 5.44204 5.55627 5.59366 5.86203 6.13968 6.42502 6.63592 6.65363 7.64616 8.10336 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.004392 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.912310 B = 6373.378717 C = 7179.399060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.051 3.949 3 Si 0.976 3.024 4 H -0.245 1.245 5 H -0.259 1.259 6 H -0.273 1.273 7 C -0.461 4.461 8 H 0.051 0.949 9 C 0.242 3.758 10 C -0.294 4.294 11 C -0.042 4.042 12 C -0.265 4.265 13 C 0.164 3.836 14 C -0.086 4.086 15 C -0.042 4.042 16 C -0.080 4.080 17 Cl -0.037 7.037 18 C 0.165 3.835 19 O -0.483 6.483 20 C -0.174 4.174 21 C 0.130 3.870 22 F -0.128 7.128 23 N -0.559 5.559 24 H 0.300 0.700 25 H 0.114 0.886 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.419 0.581 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.978 -4.217 -2.205 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.166 4.166 3 Si 0.799 3.201 4 H -0.170 1.170 5 H -0.184 1.184 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.070 0.930 9 C 0.115 3.885 10 C -0.316 4.316 11 C -0.066 4.066 12 C -0.287 4.287 13 C 0.022 3.978 14 C -0.088 4.088 15 C -0.061 4.061 16 C -0.107 4.107 17 Cl -0.008 7.008 18 C 0.118 3.882 19 O -0.297 6.297 20 C -0.193 4.193 21 C 0.110 3.890 22 F -0.106 7.106 23 N -0.273 5.273 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.187 0.813 29 H 0.280 0.720 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 18.268 -5.027 -2.234 19.079 hybrid contribution -0.408 1.199 -0.015 1.267 sum 17.861 -3.827 -2.249 18.404 Atomic orbital electron populations 1.69630 1.09163 1.32062 1.35315 1.26838 0.95552 1.04151 0.90068 0.85362 0.79008 0.75709 0.79999 1.16994 1.18351 1.19994 1.19168 0.92297 0.95654 1.42249 0.93024 1.18615 0.92634 0.88279 0.88967 1.22051 0.97936 1.04793 1.06781 1.21440 0.92248 0.96862 0.96048 1.21784 1.01579 0.99162 1.06138 1.19891 0.90338 0.93359 0.94165 1.18842 0.93591 0.95249 1.01148 1.20996 0.89826 0.97895 0.97421 1.21161 0.86930 0.97507 1.05111 1.98372 1.08840 1.98304 1.95283 1.17722 0.88287 0.87144 0.95069 1.84768 1.67136 1.39282 1.38517 1.21376 0.93168 0.99998 1.04765 1.18010 0.78117 0.95663 0.97249 1.91601 1.30645 1.95937 1.92391 1.68310 1.04653 1.27731 1.26607 0.88902 0.86806 0.82695 0.82745 0.81263 0.71990 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.70 13.92 21.83 0.30 -45.40 16 2 C 0.05 2.76 5.44 85.28 0.46 3.22 16 3 Si 0.98 42.02 24.38 68.60 1.67 43.69 16 4 H -0.24 -9.53 6.69 99.48 0.67 -8.86 16 5 H -0.26 -11.58 6.65 99.48 0.66 -10.92 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.46 -27.31 9.82 23.47 0.23 -27.08 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 C 0.24 13.13 6.03 40.26 0.24 13.37 16 10 C -0.29 -13.73 7.05 22.89 0.16 -13.56 16 11 C -0.04 -1.60 10.15 22.39 0.23 -1.37 16 12 C -0.26 -9.66 9.47 22.79 0.22 -9.44 16 13 C 0.16 7.05 6.73 42.13 0.28 7.33 16 14 C -0.09 -3.01 5.88 -19.99 -0.12 -3.13 16 15 C -0.04 -1.09 9.18 22.49 0.21 -0.88 16 16 C -0.08 -1.79 6.33 22.38 0.14 -1.65 16 17 Cl -0.04 -0.69 28.49 -2.72 -0.08 -0.77 16 18 C 0.16 3.58 6.70 22.58 0.15 3.73 16 19 O -0.48 -7.89 12.94 -91.80 -1.19 -9.08 16 20 C -0.17 -4.46 9.95 22.37 0.22 -4.24 16 21 C 0.13 4.56 7.27 22.60 0.16 4.73 16 22 F -0.13 -5.55 15.32 44.97 0.69 -4.86 16 23 N -0.56 -29.33 8.28 -178.25 -1.48 -30.81 16 24 H 0.30 14.46 8.29 -92.71 -0.77 13.69 16 25 H 0.11 5.13 4.21 -2.91 -0.01 5.12 16 26 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.16 4.14 6.21 -2.91 -0.02 4.12 16 28 H 0.17 3.60 6.20 -2.91 -0.02 3.58 16 29 H 0.42 2.70 9.06 -74.06 -0.67 2.03 16 30 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -69.34 281.90 2.99 -66.35 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.48 Total: 9.85 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 2.59 Total: -28.97 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.17 Total: -76.21 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.19 Total: -9.08 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.69 Total: -4.86 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -69.34 2.99 -66.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245667071.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.496 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds