Wall clock time and date at job start Tue Mar 31 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99652 * 2 1 4 4 H 1.48494 * 109.47498 * 275.41252 * 3 2 1 5 5 H 1.48502 * 109.47492 * 35.41689 * 3 2 1 6 6 H 1.48504 * 109.46724 * 155.41194 * 3 2 1 7 7 C 1.39974 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 341.76422 * 7 2 1 9 9 C 1.41016 * 119.99746 * 161.76554 * 7 2 1 10 10 C 1.41349 * 120.54570 * 330.37140 * 9 7 2 11 11 C 1.36527 * 118.42390 * 179.70324 * 10 9 7 12 12 C 1.40008 * 119.46749 * 0.27457 * 11 10 9 13 13 C 1.47760 * 119.46129 * 180.02562 * 12 11 10 14 14 C 1.39751 * 120.10336 * 359.72471 * 13 12 11 15 15 C 1.37775 * 119.92360 * 179.74086 * 14 13 12 16 16 Cl 1.73599 * 119.94028 * 180.25252 * 15 14 13 17 17 C 1.39162 * 120.12691 * 0.53579 * 15 14 13 18 18 O 1.35795 * 119.89576 * 179.74415 * 17 15 14 19 19 C 1.38823 * 120.20213 * 359.71757 * 17 15 14 20 20 C 1.38067 * 120.08025 * 0.02562 * 19 17 15 21 21 F 1.35095 * 120.06447 * 179.97438 * 20 19 17 22 22 N 1.33097 * 121.07843 * 359.97438 * 12 11 10 23 23 C 1.31252 * 121.71296 * 0.02562 * 22 12 11 24 24 H 0.96994 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.78723 * 359.97438 * 10 9 7 26 26 H 1.08003 * 120.26756 * 180.25050 * 11 10 9 27 27 H 1.08007 * 120.03408 * 359.97438 * 14 13 12 28 28 H 0.96707 * 114.00070 * 269.97124 * 18 17 15 29 29 H 1.08006 * 119.95974 * 180.02562 * 19 17 15 30 30 H 1.08001 * 119.79539 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3937 5 1 1.5015 2.6170 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0081 -1.2122 -0.0005 8 1 1.5089 -2.1242 0.2917 9 6 3.3652 -1.2427 -0.3827 10 6 3.8704 -0.3071 -1.3141 11 6 5.1924 -0.3722 -1.6486 12 6 6.0016 -1.3575 -1.0700 13 6 7.4325 -1.4274 -1.4317 14 6 7.9690 -0.5193 -2.3486 15 6 9.3049 -0.5845 -2.6791 16 17 9.9731 0.5474 -3.8131 17 6 10.1184 -1.5598 -2.1102 18 8 11.4334 -1.6230 -2.4433 19 6 9.5899 -2.4678 -1.2028 20 6 8.2535 -2.4068 -0.8615 21 9 7.7394 -3.2910 0.0212 22 7 5.5031 -2.2315 -0.1988 23 6 4.2392 -2.2094 0.1542 24 1 -0.4850 0.8400 0.0004 25 1 3.2268 0.4442 -1.7475 26 1 5.6107 0.3305 -2.3541 27 1 7.3377 0.2351 -2.7947 28 1 11.6197 -2.1912 -3.2033 29 1 10.2250 -3.2228 -0.7633 30 1 3.8676 -2.9334 0.8643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245667687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:46 Heat of formation + Delta-G solvation = -42.816122 kcal Electronic energy + Delta-G solvation = -19912.089082 eV Core-core repulsion = 16419.514572 eV Total energy + Delta-G solvation = -3492.574510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.28495 -39.67334 -38.68278 -36.63524 -36.27553 -34.29460 -31.81283 -31.48553 -30.17960 -28.93191 -25.54158 -23.30245 -22.99945 -21.49581 -20.95877 -18.66109 -17.83487 -17.03389 -16.67338 -16.22019 -15.64126 -15.20906 -14.97102 -14.74202 -14.24246 -13.97221 -13.40302 -13.21000 -13.19816 -12.92421 -12.63242 -12.37091 -12.19423 -11.64539 -11.37252 -11.23269 -11.08710 -10.95412 -10.63977 -10.51639 -10.20558 -9.77409 -9.07845 -8.72222 -8.53480 -8.30984 -7.55302 -7.38852 -4.82790 0.85638 1.16098 2.12782 2.24340 2.52176 2.85291 2.97905 3.06510 3.51410 3.66751 3.97580 4.31590 4.65686 4.73880 4.95267 5.21135 5.30699 5.48671 5.62214 5.86230 5.92122 6.02062 6.14401 6.17233 6.37827 6.47189 6.57941 6.78765 6.95484 7.19880 7.36481 7.49485 7.53156 7.88374 8.14775 8.30471 9.19879 9.59322 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.004406 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.852836 B = 6352.935149 C = 7330.808761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.402 4.402 8 H 0.102 0.898 9 C 0.047 3.953 10 C -0.217 4.217 11 C -0.087 4.087 12 C -0.027 4.027 13 C -0.005 4.005 14 C -0.093 4.093 15 C -0.062 4.062 16 Cl -0.065 7.065 17 C 0.108 3.892 18 O -0.485 6.485 19 C -0.168 4.168 20 C 0.123 3.877 21 F -0.110 7.110 22 N -0.428 5.428 23 C 0.011 3.989 24 H 0.294 0.706 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.387 0.613 29 H 0.144 0.856 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 0.356 -5.169 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.430 4.430 8 H 0.120 0.880 9 C 0.042 3.958 10 C -0.241 4.241 11 C -0.107 4.107 12 C -0.158 4.158 13 C -0.007 4.007 14 C -0.113 4.113 15 C -0.090 4.090 16 Cl -0.037 7.037 17 C 0.062 3.938 18 O -0.294 6.294 19 C -0.187 4.187 20 C 0.102 3.898 21 F -0.088 7.088 22 N -0.135 5.135 23 C -0.158 4.158 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.243 0.757 29 H 0.162 0.838 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.161 0.298 -4.424 13.888 hybrid contribution -0.574 1.047 -0.772 1.422 sum 12.587 1.346 -5.196 13.684 Atomic orbital electron populations 1.69667 1.08305 1.31396 1.30371 1.26376 0.94889 1.02422 0.90734 0.86223 0.81424 0.78974 0.79393 1.19032 1.20988 1.16507 1.19678 0.92746 0.96482 1.34047 0.87997 1.18746 0.94114 0.92512 0.90458 1.21007 0.95540 1.04454 1.03129 1.21188 0.94264 0.96928 0.98290 1.18419 0.91078 1.00362 1.05893 1.18679 0.92932 0.93641 0.95432 1.20807 0.92595 0.99788 0.98062 1.21096 0.93615 0.96153 0.98116 1.98346 1.85794 1.59973 1.59546 1.17659 0.83561 0.94984 0.97630 1.84829 1.20062 1.71328 1.53204 1.21146 0.94123 1.01570 1.01902 1.17481 0.90579 0.90109 0.91618 1.91578 1.87058 1.65259 1.64865 1.67149 1.15523 1.21117 1.09674 1.22581 0.87930 1.02354 1.02949 0.89510 0.87045 0.87420 0.83817 0.75670 0.83832 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.40 13.93 55.55 0.77 -17.63 16 2 C 0.08 1.86 5.42 -17.33 -0.09 1.76 16 3 Si 0.91 18.77 24.52 -169.99 -4.17 14.60 16 4 H -0.26 -5.22 6.70 56.52 0.38 -4.84 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.24 -5.22 6.86 56.52 0.39 -4.84 16 7 C -0.40 -9.72 9.58 -37.88 -0.36 -10.09 16 8 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.05 1.11 5.12 -106.63 -0.55 0.57 16 10 C -0.22 -4.84 7.22 -39.02 -0.28 -5.12 16 11 C -0.09 -1.79 9.38 -39.54 -0.37 -2.16 16 12 C -0.03 -0.59 6.74 -82.76 -0.56 -1.14 16 13 C 0.00 -0.09 5.89 -104.80 -0.62 -0.70 16 14 C -0.09 -1.45 9.18 -39.19 -0.36 -1.81 16 15 C -0.06 -0.89 6.33 -39.41 -0.25 -1.14 16 16 Cl -0.07 -0.82 28.49 -51.86 -1.48 -2.30 16 17 C 0.11 1.46 6.70 -39.02 -0.26 1.20 16 18 O -0.48 -5.49 12.94 -19.10 -0.25 -5.74 16 19 C -0.17 -2.39 9.95 -39.43 -0.39 -2.79 16 20 C 0.12 2.15 7.28 -39.01 -0.28 1.86 16 21 F -0.11 -2.11 15.28 2.25 0.03 -2.08 16 22 N -0.43 -9.79 8.28 -9.12 -0.08 -9.87 16 23 C 0.01 0.26 10.97 -16.77 -0.18 0.07 16 24 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 25 H 0.11 2.40 4.78 -52.48 -0.25 2.15 16 26 H 0.11 1.86 6.14 -52.48 -0.32 1.54 16 27 H 0.14 2.06 6.14 -52.48 -0.32 1.74 16 28 H 0.39 2.57 9.06 45.56 0.41 2.98 16 29 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.14 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 282.44 15.07 4.26 4.26 Total: -1.00 -26.51 282.44 -6.39 -32.90 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -0.92 Total: 5.35 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.56 Total: -19.49 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.70 Total: -27.50 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.25 Total: -5.74 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.17 Total: 14.60 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.51 -6.39 -32.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245667687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.916 kcal (2) G-P(sol) polarization free energy of solvation -26.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds