Wall clock time and date at job start Tue Mar 31 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99652 * 2 1 4 4 H 1.48494 * 109.47498 * 275.41252 * 3 2 1 5 5 H 1.48502 * 109.47492 * 35.41689 * 3 2 1 6 6 H 1.48504 * 109.46724 * 155.41194 * 3 2 1 7 7 C 1.39974 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 341.76422 * 7 2 1 9 9 C 1.41016 * 119.99746 * 161.76554 * 7 2 1 10 10 C 1.41349 * 120.54570 * 330.37140 * 9 7 2 11 11 C 1.36527 * 118.42390 * 179.70324 * 10 9 7 12 12 C 1.40008 * 119.46749 * 0.27457 * 11 10 9 13 13 C 1.47760 * 119.46129 * 180.02562 * 12 11 10 14 14 C 1.39751 * 120.10336 * 359.72471 * 13 12 11 15 15 C 1.37775 * 119.92360 * 179.74086 * 14 13 12 16 16 Cl 1.73599 * 119.94028 * 180.25252 * 15 14 13 17 17 C 1.39162 * 120.12691 * 0.53579 * 15 14 13 18 18 O 1.35795 * 119.89576 * 179.74415 * 17 15 14 19 19 C 1.38823 * 120.20213 * 359.71757 * 17 15 14 20 20 C 1.38067 * 120.08025 * 0.02562 * 19 17 15 21 21 F 1.35095 * 120.06447 * 179.97438 * 20 19 17 22 22 N 1.33097 * 121.07843 * 359.97438 * 12 11 10 23 23 C 1.31252 * 121.71296 * 0.02562 * 22 12 11 24 24 H 0.96994 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.78723 * 359.97438 * 10 9 7 26 26 H 1.08003 * 120.26756 * 180.25050 * 11 10 9 27 27 H 1.08007 * 120.03408 * 359.97438 * 14 13 12 28 28 H 0.96707 * 114.00070 * 269.97124 * 18 17 15 29 29 H 1.08006 * 119.95974 * 180.02562 * 19 17 15 30 30 H 1.08001 * 119.79539 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3937 5 1 1.5015 2.6170 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0081 -1.2122 -0.0005 8 1 1.5089 -2.1242 0.2917 9 6 3.3652 -1.2427 -0.3827 10 6 3.8704 -0.3071 -1.3141 11 6 5.1924 -0.3722 -1.6486 12 6 6.0016 -1.3575 -1.0700 13 6 7.4325 -1.4274 -1.4317 14 6 7.9690 -0.5193 -2.3486 15 6 9.3049 -0.5845 -2.6791 16 17 9.9731 0.5474 -3.8131 17 6 10.1184 -1.5598 -2.1102 18 8 11.4334 -1.6230 -2.4433 19 6 9.5899 -2.4678 -1.2028 20 6 8.2535 -2.4068 -0.8615 21 9 7.7394 -3.2910 0.0212 22 7 5.5031 -2.2315 -0.1988 23 6 4.2392 -2.2094 0.1542 24 1 -0.4850 0.8400 0.0004 25 1 3.2268 0.4442 -1.7475 26 1 5.6107 0.3305 -2.3541 27 1 7.3377 0.2351 -2.7947 28 1 11.6197 -2.1912 -3.2033 29 1 10.2250 -3.2228 -0.7633 30 1 3.8676 -2.9334 0.8643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245667687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:45 Heat of formation + Delta-G solvation = -59.082904 kcal Electronic energy + Delta-G solvation = -19912.794462 eV Core-core repulsion = 16419.514572 eV Total energy + Delta-G solvation = -3493.279890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.69594 -40.99389 -40.18990 -37.73046 -37.41142 -35.97334 -33.45255 -33.04850 -31.46097 -30.37568 -27.14174 -24.77067 -24.42628 -22.94677 -22.51363 -19.75801 -19.56910 -18.46763 -18.01086 -17.44188 -17.17945 -16.60589 -16.53903 -16.08593 -15.67450 -15.28537 -14.94182 -14.76130 -14.54111 -14.46094 -13.93777 -13.90117 -13.69804 -13.28512 -12.83557 -12.58622 -12.35273 -12.20727 -12.08231 -11.90398 -11.69134 -11.43521 -10.45908 -10.41699 -10.02936 -9.79938 -9.10010 -9.07684 -6.62252 -0.44408 -0.04670 0.64256 0.79986 1.02764 1.21817 1.35840 1.43783 2.01872 2.19374 2.63020 2.88896 3.40619 3.45302 3.47567 3.63861 3.99546 4.08492 4.32152 4.35405 4.57284 4.63416 4.69307 4.78346 4.90284 4.95687 5.10372 5.27126 5.40488 5.61586 5.63946 5.80803 6.10171 6.41266 6.54260 6.71059 7.46450 7.95381 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.004406 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.852836 B = 6352.935149 C = 7330.808761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.053 3.947 3 Si 0.961 3.039 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.074 0.926 9 C 0.037 3.963 10 C -0.221 4.221 11 C -0.093 4.093 12 C -0.016 4.016 13 C -0.043 4.043 14 C -0.076 4.076 15 C -0.069 4.069 16 Cl -0.045 7.045 17 C 0.140 3.860 18 O -0.484 6.484 19 C -0.162 4.162 20 C 0.110 3.890 21 F -0.127 7.127 22 N -0.446 5.446 23 C -0.009 4.009 24 H 0.303 0.697 25 H 0.120 0.880 26 H 0.147 0.853 27 H 0.158 0.842 28 H 0.415 0.585 29 H 0.169 0.831 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.578 1.720 -7.008 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.167 4.167 3 Si 0.783 3.217 4 H -0.171 1.171 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.092 0.908 9 C 0.032 3.968 10 C -0.246 4.246 11 C -0.113 4.113 12 C -0.149 4.149 13 C -0.045 4.045 14 C -0.096 4.096 15 C -0.097 4.097 16 Cl -0.016 7.016 17 C 0.093 3.907 18 O -0.298 6.298 19 C -0.181 4.181 20 C 0.090 3.910 21 F -0.105 7.105 22 N -0.154 5.154 23 C -0.175 4.175 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.164 0.836 27 H 0.176 0.824 28 H 0.275 0.725 29 H 0.187 0.813 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.960 1.631 -6.272 18.156 hybrid contribution -1.185 0.531 -0.371 1.351 sum 15.775 2.163 -6.643 17.253 Atomic orbital electron populations 1.69674 1.09161 1.32504 1.32569 1.26896 0.95366 1.04271 0.90123 0.85545 0.79419 0.76409 0.80316 1.17057 1.19588 1.18404 1.19548 0.93616 0.96346 1.37761 0.90781 1.18828 0.93876 0.93213 0.90920 1.21223 0.96562 1.04195 1.02587 1.21561 0.93540 0.97444 0.98733 1.19095 0.92863 0.99033 1.03865 1.18667 0.91629 0.96060 0.98169 1.20910 0.93418 0.98765 0.96493 1.21173 0.93280 0.96729 0.98511 1.98363 1.85351 1.59216 1.58652 1.17692 0.84093 0.93292 0.95639 1.84771 1.18226 1.72110 1.54684 1.21330 0.92927 1.02179 1.01689 1.17806 0.91862 0.89811 0.91540 1.91538 1.87520 1.65885 1.65591 1.67219 1.15276 1.22214 1.10660 1.22713 0.88278 1.02927 1.03601 0.88598 0.86237 0.83566 0.82449 0.72461 0.81345 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.34 13.93 21.83 0.30 -40.03 16 2 C 0.05 2.58 5.42 85.26 0.46 3.04 16 3 Si 0.96 38.65 24.52 68.60 1.68 40.33 16 4 H -0.25 -9.06 6.70 99.48 0.67 -8.40 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -11.11 6.86 99.48 0.68 -10.42 16 7 C -0.44 -22.90 9.58 23.37 0.22 -22.67 16 8 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 9 C 0.04 1.79 5.12 -21.17 -0.11 1.68 16 10 C -0.22 -9.79 7.22 22.64 0.16 -9.62 16 11 C -0.09 -3.69 9.38 22.30 0.21 -3.48 16 12 C -0.02 -0.66 6.74 41.90 0.28 -0.38 16 13 C -0.04 -1.50 5.89 -19.98 -0.12 -1.61 16 14 C -0.08 -2.11 9.18 22.53 0.21 -1.90 16 15 C -0.07 -1.67 6.33 22.38 0.14 -1.53 16 16 Cl -0.04 -0.93 28.49 -2.72 -0.08 -1.01 16 17 C 0.14 3.13 6.70 22.63 0.15 3.28 16 18 O -0.48 -8.34 12.94 -91.25 -1.18 -9.52 16 19 C -0.16 -4.02 9.95 22.37 0.22 -3.79 16 20 C 0.11 3.63 7.28 22.64 0.16 3.80 16 21 F -0.13 -4.82 15.28 44.97 0.69 -4.14 16 22 N -0.45 -20.70 8.28 -182.76 -1.51 -22.22 16 23 C -0.01 -0.43 10.97 85.45 0.94 0.51 16 24 H 0.30 13.25 8.30 -92.71 -0.77 12.48 16 25 H 0.12 5.03 4.78 -2.91 -0.01 5.01 16 26 H 0.15 4.54 6.14 -2.91 -0.02 4.52 16 27 H 0.16 3.85 6.14 -2.91 -0.02 3.83 16 28 H 0.41 3.06 9.06 -74.05 -0.67 2.39 16 29 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 30 H 0.14 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -58.94 282.44 3.34 -55.60 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.49 Total: 13.67 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 2.94 Total: -32.70 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -1.21 Total: -62.25 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.18 Total: -9.52 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.69 Total: -4.14 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.68 Total: 40.33 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -58.94 3.34 -55.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245667687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.478 kcal (2) G-P(sol) polarization free energy of solvation -58.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds