Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86797 * 120.00428 * 2 1 4 4 H 1.48497 * 109.47386 * 270.00222 * 3 2 1 5 5 H 1.48500 * 109.46867 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47053 * 150.00025 * 3 2 1 7 7 C 1.40035 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 192.36868 * 7 2 1 9 9 C 1.40833 * 119.99860 * 12.36140 * 7 2 1 10 10 C 1.41114 * 120.72523 * 27.80278 * 9 7 2 11 11 C 1.36867 * 118.40923 * 179.69978 * 10 9 7 12 12 C 1.38895 * 119.82149 * 0.27266 * 11 10 9 13 13 N 1.31725 * 121.51426 * 0.02562 * 12 11 10 14 14 C 1.32679 * 121.70776 * 359.97438 * 13 12 11 15 15 C 1.47590 * 120.00083 * 180.02562 * 14 13 12 16 16 C 1.39831 * 120.10548 * 229.75370 * 15 14 13 17 17 C 1.37757 * 119.91300 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 119.93086 * 179.97438 * 17 16 15 19 19 C 1.39181 * 120.13440 * 359.97438 * 17 16 15 20 20 O 1.35796 * 119.88607 * 180.02562 * 19 17 16 21 21 C 1.38831 * 120.22071 * 0.02623 * 19 17 16 22 22 C 1.38044 * 120.08297 * 359.73609 * 21 19 17 23 23 F 1.35106 * 120.07220 * 180.27703 * 22 21 19 24 24 H 0.96994 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.79549 * 359.96586 * 10 9 7 26 26 H 1.08005 * 120.09483 * 180.29438 * 11 10 9 27 27 H 1.07998 * 119.24222 * 179.97438 * 12 11 10 28 28 H 1.07997 * 120.04730 * 359.95148 * 16 15 14 29 29 H 0.96699 * 114.00524 * 90.00075 * 20 19 17 30 30 H 1.07999 * 119.96268 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 2.4896 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5397 1.4400 0.7000 7 6 2.0082 -1.2127 -0.0005 8 1 3.0694 -1.2237 0.1998 9 6 1.3285 -2.4181 -0.2622 10 6 0.1669 -2.4316 -1.0634 11 6 -0.4525 -3.6304 -1.2922 12 6 0.0644 -4.7925 -0.7341 13 7 1.1457 -4.7734 0.0180 14 6 1.7938 -3.6454 0.2789 15 6 3.0021 -3.6675 1.1261 16 6 3.1243 -2.7767 2.1970 17 6 4.2536 -2.8012 2.9855 18 17 4.4060 -1.6950 4.3147 19 6 5.2726 -3.7109 2.7186 20 8 6.3834 -3.7310 3.4994 21 6 5.1571 -4.5978 1.6568 22 6 4.0272 -4.5845 0.8638 23 9 3.9126 -5.4515 -0.1660 24 1 -0.4849 0.8400 0.0004 25 1 -0.2215 -1.5183 -1.4895 26 1 -1.3406 -3.6729 -1.9053 27 1 -0.4321 -5.7334 -0.9203 28 1 2.3345 -2.0702 2.4055 29 1 6.3194 -4.3255 4.2594 30 1 5.9501 -5.3022 1.4537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245668081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -49.300373 kcal Electronic energy + Delta-G solvation = -20543.215099 eV Core-core repulsion = 17050.359412 eV Total energy + Delta-G solvation = -3492.855688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.27185 -39.45632 -38.40070 -36.37555 -35.97358 -34.28815 -31.49628 -30.77305 -29.99462 -28.18651 -25.77129 -23.08381 -22.59326 -21.48513 -20.60341 -18.48619 -17.52966 -16.61118 -16.45544 -16.06948 -15.65651 -15.13582 -14.75707 -14.37836 -14.15435 -13.71769 -13.41958 -13.19821 -12.66832 -12.57047 -12.32383 -11.96135 -11.61476 -11.52904 -11.21164 -11.15246 -11.00294 -10.72971 -10.68888 -10.42221 -9.96795 -9.56539 -8.77334 -8.34646 -8.20816 -8.15604 -7.51378 -7.01771 -4.68920 1.20626 1.44512 2.36086 2.49939 2.80029 2.94853 2.99208 3.08478 3.73314 3.75484 4.16045 4.42777 4.84110 5.02045 5.18713 5.42935 5.63446 5.80954 5.98607 6.14697 6.15999 6.32499 6.47563 6.56810 6.73345 6.79545 6.92605 6.97168 7.07992 7.56198 7.64315 7.69688 7.75913 8.22322 8.45347 8.51498 9.41944 9.85807 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.008103 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.242810 B = 3454.819422 C = 5174.247579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.439 4.439 8 H 0.087 0.913 9 C 0.091 3.909 10 C -0.125 4.125 11 C -0.146 4.146 12 C -0.027 4.027 13 N -0.443 5.443 14 C -0.003 4.003 15 C 0.005 3.995 16 C -0.045 4.045 17 C -0.074 4.074 18 Cl -0.067 7.067 19 C 0.118 3.882 20 O -0.485 6.485 21 C -0.177 4.177 22 C 0.123 3.877 23 F -0.125 7.125 24 H 0.287 0.713 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.387 0.613 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -2.186 4.612 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.468 4.468 8 H 0.105 0.895 9 C 0.086 3.914 10 C -0.151 4.151 11 C -0.166 4.166 12 C -0.189 4.189 13 N -0.150 5.150 14 C -0.140 4.140 15 C 0.002 3.998 16 C -0.065 4.065 17 C -0.101 4.101 18 Cl -0.038 7.038 19 C 0.072 3.928 20 O -0.295 6.295 21 C -0.196 4.196 22 C 0.102 3.898 23 F -0.103 7.103 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.243 0.757 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.787 -2.311 4.649 7.775 hybrid contribution -0.300 1.183 -0.169 1.232 sum 5.487 -1.129 4.480 7.173 Atomic orbital electron populations 1.69743 1.07689 1.30078 1.33160 1.26004 0.94856 1.01690 0.91906 0.86246 0.80868 0.79874 0.79785 1.18931 1.19855 1.17832 1.19605 0.96795 0.90161 1.40202 0.89456 1.18297 0.91806 0.92239 0.89013 1.21442 0.97627 0.97010 0.99007 1.21484 0.99788 0.94491 1.00837 1.21683 0.96753 0.96771 1.03724 1.67042 1.06714 1.29400 1.11886 1.19090 0.98891 0.90234 1.05771 1.18443 0.93045 0.93695 0.94570 1.21101 0.96196 0.97834 0.91372 1.21175 0.96641 0.97461 0.94871 1.98335 1.97939 1.61753 1.45786 1.17696 0.86328 0.95368 0.93388 1.84816 1.34989 1.68185 1.41499 1.21017 0.98502 1.02227 0.97898 1.17649 0.94149 0.90842 0.87143 1.91504 1.96083 1.66952 1.55803 0.90185 0.85264 0.88066 0.85904 0.82825 0.75730 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.27 10.90 55.55 0.61 -17.67 16 2 C 0.08 1.72 5.25 -17.32 -0.09 1.63 16 3 Si 0.91 17.42 29.58 -169.99 -5.03 12.39 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -10.54 7.08 -37.93 -0.27 -10.81 16 8 H 0.09 2.07 6.71 -52.49 -0.35 1.72 16 9 C 0.09 2.27 5.56 -106.40 -0.59 1.68 16 10 C -0.12 -3.01 8.72 -38.99 -0.34 -3.35 16 11 C -0.15 -3.21 10.03 -39.84 -0.40 -3.61 16 12 C -0.03 -0.60 11.16 -17.35 -0.19 -0.80 16 13 N -0.44 -10.70 9.80 -9.19 -0.09 -10.79 16 14 C 0.00 -0.07 6.12 -82.26 -0.50 -0.58 16 15 C 0.00 0.10 5.07 -104.82 -0.53 -0.43 16 16 C -0.05 -0.89 7.79 -39.16 -0.31 -1.20 16 17 C -0.07 -1.28 6.33 -39.41 -0.25 -1.53 16 18 Cl -0.07 -1.04 28.49 -51.86 -1.48 -2.52 16 19 C 0.12 1.86 6.70 -39.01 -0.26 1.60 16 20 O -0.49 -6.38 12.94 -19.10 -0.25 -6.63 16 21 C -0.18 -2.88 9.95 -39.43 -0.39 -3.27 16 22 C 0.12 2.41 7.25 -38.99 -0.28 2.12 16 23 F -0.13 -2.60 16.45 2.25 0.04 -2.56 16 24 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 25 H 0.13 3.14 6.31 -52.48 -0.33 2.81 16 26 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 27 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 28 H 0.15 3.16 7.30 -52.49 -0.38 2.78 16 29 H 0.39 3.20 9.06 45.56 0.41 3.61 16 30 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 288.33 15.07 4.35 4.35 Total: -1.00 -26.91 288.33 -7.32 -34.23 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -1.06 Total: 7.73 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -4.41 Total: -18.53 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.52 Total: -28.46 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.25 Total: -6.63 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.52 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.91 -7.32 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245668081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.073 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds