Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86797 * 120.00428 * 2 1 4 4 H 1.48497 * 109.47386 * 270.00222 * 3 2 1 5 5 H 1.48500 * 109.46867 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47053 * 150.00025 * 3 2 1 7 7 C 1.40035 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 192.36868 * 7 2 1 9 9 C 1.40833 * 119.99860 * 12.36140 * 7 2 1 10 10 C 1.41114 * 120.72523 * 27.80278 * 9 7 2 11 11 C 1.36867 * 118.40923 * 179.69978 * 10 9 7 12 12 C 1.38895 * 119.82149 * 0.27266 * 11 10 9 13 13 N 1.31725 * 121.51426 * 0.02562 * 12 11 10 14 14 C 1.32679 * 121.70776 * 359.97438 * 13 12 11 15 15 C 1.47590 * 120.00083 * 180.02562 * 14 13 12 16 16 C 1.39831 * 120.10548 * 229.75370 * 15 14 13 17 17 C 1.37757 * 119.91300 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 119.93086 * 179.97438 * 17 16 15 19 19 C 1.39181 * 120.13440 * 359.97438 * 17 16 15 20 20 O 1.35796 * 119.88607 * 180.02562 * 19 17 16 21 21 C 1.38831 * 120.22071 * 0.02623 * 19 17 16 22 22 C 1.38044 * 120.08297 * 359.73609 * 21 19 17 23 23 F 1.35106 * 120.07220 * 180.27703 * 22 21 19 24 24 H 0.96994 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.79549 * 359.96586 * 10 9 7 26 26 H 1.08005 * 120.09483 * 180.29438 * 11 10 9 27 27 H 1.07998 * 119.24222 * 179.97438 * 12 11 10 28 28 H 1.07997 * 120.04730 * 359.95148 * 16 15 14 29 29 H 0.96699 * 114.00524 * 90.00075 * 20 19 17 30 30 H 1.07999 * 119.96268 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 2.4896 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5397 1.4400 0.7000 7 6 2.0082 -1.2127 -0.0005 8 1 3.0694 -1.2237 0.1998 9 6 1.3285 -2.4181 -0.2622 10 6 0.1669 -2.4316 -1.0634 11 6 -0.4525 -3.6304 -1.2922 12 6 0.0644 -4.7925 -0.7341 13 7 1.1457 -4.7734 0.0180 14 6 1.7938 -3.6454 0.2789 15 6 3.0021 -3.6675 1.1261 16 6 3.1243 -2.7767 2.1970 17 6 4.2536 -2.8012 2.9855 18 17 4.4060 -1.6950 4.3147 19 6 5.2726 -3.7109 2.7186 20 8 6.3834 -3.7310 3.4994 21 6 5.1571 -4.5978 1.6568 22 6 4.0272 -4.5845 0.8638 23 9 3.9126 -5.4515 -0.1660 24 1 -0.4849 0.8400 0.0004 25 1 -0.2215 -1.5183 -1.4895 26 1 -1.3406 -3.6729 -1.9053 27 1 -0.4321 -5.7334 -0.9203 28 1 2.3345 -2.0702 2.4055 29 1 6.3194 -4.3255 4.2594 30 1 5.9501 -5.3022 1.4537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245668081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = -64.841371 kcal Electronic energy + Delta-G solvation = -20543.889008 eV Core-core repulsion = 17050.359412 eV Total energy + Delta-G solvation = -3493.529596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.82035 -40.89865 -40.00377 -37.64352 -37.32230 -36.03489 -33.07688 -32.53421 -31.44857 -29.74559 -27.51227 -24.60991 -24.10266 -23.18181 -22.21451 -19.76127 -19.28911 -18.13230 -17.93098 -17.44338 -17.32528 -16.65533 -16.28850 -16.01296 -15.67676 -15.20611 -14.87936 -14.64486 -14.33405 -14.13217 -13.81374 -13.59090 -13.27349 -13.23111 -12.81827 -12.67500 -12.29281 -12.19283 -12.11821 -11.75863 -11.61450 -11.25934 -10.38077 -9.99855 -9.93000 -9.73183 -9.15101 -8.72576 -6.48807 -0.22686 0.02700 0.74687 1.00423 1.12356 1.37429 1.48069 1.50147 2.14587 2.32425 2.68774 2.88519 3.42034 3.55897 3.66612 3.76617 4.21356 4.32650 4.48632 4.64343 4.69299 4.76839 4.82164 4.99195 5.02939 5.14739 5.28722 5.30181 5.58581 5.79010 5.89171 5.97823 6.43422 6.67854 6.72249 6.73940 7.63469 8.17582 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.008103 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.242810 B = 3454.819422 C = 5174.247579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.044 3.956 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.063 3.937 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.037 4.037 13 N -0.463 5.463 14 C -0.014 4.014 15 C -0.029 4.029 16 C -0.050 4.050 17 C -0.077 4.077 18 Cl -0.050 7.050 19 C 0.145 3.855 20 O -0.481 6.481 21 C -0.162 4.162 22 C 0.110 3.890 23 F -0.137 7.137 24 H 0.295 0.705 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.415 0.585 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -2.208 5.547 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.058 3.942 10 C -0.175 4.175 11 C -0.164 4.164 12 C -0.198 4.198 13 N -0.171 5.171 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.069 4.069 17 C -0.105 4.105 18 Cl -0.022 7.022 19 C 0.098 3.902 20 O -0.295 6.295 21 C -0.181 4.181 22 C 0.089 3.911 23 F -0.115 7.115 24 H 0.106 0.894 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.275 0.725 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.397 -2.360 5.605 9.576 hybrid contribution -0.736 1.108 -0.346 1.375 sum 6.661 -1.252 5.260 8.579 Atomic orbital electron populations 1.69773 1.08786 1.31252 1.33538 1.26686 0.95476 1.04131 0.91122 0.85340 0.79501 0.76244 0.79855 1.18494 1.18793 1.18026 1.19649 0.96574 0.90794 1.41416 0.90036 1.18646 0.92623 0.93164 0.89730 1.21505 0.98394 0.97588 0.99977 1.21775 1.00414 0.93635 1.00569 1.22250 0.96392 0.98132 1.03046 1.67118 1.07528 1.29659 1.12755 1.19520 0.99779 0.90015 1.05793 1.18472 0.93201 0.95771 0.95628 1.20866 0.96824 0.97420 0.91822 1.21236 0.96277 0.98017 0.94941 1.98340 1.97825 1.61292 1.44697 1.17619 0.85903 0.93658 0.92989 1.84762 1.33230 1.69120 1.42372 1.21251 0.97845 1.02333 0.96708 1.17836 0.95049 0.90585 0.87603 1.91467 1.96253 1.67295 1.56516 0.89418 0.86132 0.84947 0.82973 0.84756 0.72504 0.80754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.56 10.90 21.84 0.24 -38.32 16 2 C 0.04 2.02 5.25 85.28 0.45 2.46 16 3 Si 0.97 35.72 29.58 68.60 2.03 37.75 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.46 -22.61 7.08 23.34 0.17 -22.45 16 8 H 0.08 4.01 6.71 -2.91 -0.02 3.99 16 9 C 0.06 3.25 5.56 -21.02 -0.12 3.13 16 10 C -0.15 -7.39 8.72 22.65 0.20 -7.19 16 11 C -0.14 -6.36 10.03 22.11 0.22 -6.14 16 12 C -0.04 -1.64 11.16 84.87 0.95 -0.69 16 13 N -0.46 -22.73 9.80 -182.99 -1.79 -24.52 16 14 C -0.01 -0.70 6.12 42.41 0.26 -0.44 16 15 C -0.03 -1.25 5.07 -19.99 -0.10 -1.35 16 16 C -0.05 -1.97 7.79 22.54 0.18 -1.79 16 17 C -0.08 -2.55 6.33 22.38 0.14 -2.41 16 18 Cl -0.05 -1.48 28.49 -2.72 -0.08 -1.55 16 19 C 0.14 4.15 6.70 22.64 0.15 4.30 16 20 O -0.48 -10.60 12.94 -91.26 -1.18 -11.78 16 21 C -0.16 -4.86 9.95 22.37 0.22 -4.63 16 22 C 0.11 4.25 7.25 22.66 0.16 4.41 16 23 F -0.14 -5.68 16.45 44.97 0.74 -4.94 16 24 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 25 H 0.12 6.08 6.31 -2.91 -0.02 6.06 16 26 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 27 H 0.15 5.70 8.06 -2.91 -0.02 5.68 16 28 H 0.13 5.77 7.30 -2.91 -0.02 5.75 16 29 H 0.41 4.84 9.06 -74.06 -0.67 4.17 16 30 H 0.18 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -59.01 288.33 3.38 -55.63 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.55 Total: 20.53 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 2.88 Total: -32.79 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -1.55 Total: -62.85 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.18 Total: -11.78 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.74 Total: -4.94 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -59.01 3.38 -55.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245668081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.214 kcal (2) G-P(sol) polarization free energy of solvation -59.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds