Wall clock time and date at job start Tue Mar 31 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99358 * 2 1 4 4 H 1.48506 * 109.46705 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47486 * 299.99300 * 3 2 1 6 6 H 1.48501 * 109.47696 * 59.99902 * 3 2 1 7 7 C 1.40037 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00238 * 197.30876 * 7 2 1 9 9 C 1.41538 * 119.99944 * 17.31321 * 7 2 1 10 10 C 1.41162 * 120.98396 * 23.15855 * 9 7 2 11 11 C 1.37704 * 119.08987 * 180.02562 * 10 9 7 12 12 N 1.31944 * 121.16162 * 359.72358 * 11 10 9 13 13 C 1.32822 * 122.19610 * 0.57195 * 12 11 10 14 14 C 1.48250 * 119.62111 * 179.70488 * 13 12 11 15 15 C 1.39444 * 120.07826 * 179.70578 * 14 13 12 16 16 C 1.37934 * 119.94155 * 180.02562 * 15 14 13 17 17 Cl 1.73600 * 119.94727 * 179.97438 * 16 15 14 18 18 C 1.39009 * 120.10123 * 359.97438 * 16 15 14 19 19 O 1.35862 * 119.92013 * 180.02562 * 18 16 15 20 20 C 1.38742 * 120.15600 * 0.02562 * 18 16 15 21 21 C 1.38164 * 120.05356 * 0.02562 * 20 18 16 22 22 F 1.35103 * 120.04562 * 180.02562 * 21 20 18 23 23 C 1.38982 * 120.76178 * 359.43012 * 13 12 11 24 24 H 0.96996 * 120.00714 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.45343 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.41806 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.03097 * 0.04087 * 15 14 13 28 28 H 0.96700 * 113.99844 * 269.97948 * 19 18 16 29 29 H 1.08000 * 119.96700 * 180.27355 * 20 18 16 30 30 H 1.07998 * 120.62471 * 180.25724 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8825 2.3966 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0510 -1.2337 0.2788 9 6 1.3481 -2.4109 -0.3637 10 6 0.1904 -2.3866 -1.1709 11 6 -0.4204 -3.5757 -1.5014 12 7 0.0609 -4.7303 -1.0815 13 6 1.1432 -4.8094 -0.3157 14 6 1.6308 -6.1369 0.1289 15 6 2.7696 -6.2314 0.9280 16 6 3.2211 -7.4681 1.3397 17 17 4.6393 -7.5859 2.3340 18 6 2.5423 -8.6201 0.9596 19 8 2.9900 -9.8362 1.3676 20 6 1.4088 -8.5308 0.1646 21 6 0.9515 -7.2955 -0.2523 22 9 -0.1527 -7.2087 -1.0260 23 6 1.8272 -3.6623 0.0690 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2108 -1.4483 -1.5245 26 1 -1.3067 -3.5633 -2.1183 27 1 3.2976 -5.3372 1.2246 28 1 3.6224 -10.2460 0.7617 29 1 0.8812 -9.4275 -0.1253 30 1 2.7094 -3.7295 0.6883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245669393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:06 Heat of formation + Delta-G solvation = -43.263009 kcal Electronic energy + Delta-G solvation = -19861.332244 eV Core-core repulsion = 16368.738356 eV Total energy + Delta-G solvation = -3492.593888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.35078 -39.71940 -38.41671 -36.64899 -36.27225 -34.24079 -31.49973 -30.92009 -30.18529 -27.86390 -26.09264 -23.56501 -22.78796 -21.23772 -20.78905 -18.71400 -17.83266 -16.71948 -16.28501 -16.14695 -15.45196 -15.15511 -14.76078 -14.59233 -14.29683 -13.86185 -13.60325 -13.20025 -12.93630 -12.70556 -12.46899 -12.37897 -11.59333 -11.49071 -11.30687 -11.20999 -11.05135 -10.95340 -10.66283 -10.38600 -9.99389 -9.55808 -9.12302 -8.53696 -8.19250 -8.09932 -7.33614 -6.96892 -4.72025 0.83715 1.11663 2.12352 2.59355 2.64584 2.96600 3.01674 3.10061 3.60102 3.77050 3.90399 4.54799 4.59564 4.70201 4.87051 5.27699 5.47740 5.53373 5.65592 5.90936 5.98380 6.15934 6.21790 6.60161 6.69734 6.74960 6.88111 6.97316 7.17541 7.29630 7.43689 7.71137 7.93840 8.30931 8.58596 8.60941 9.40658 9.94663 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.004378 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.631025 B = 6393.772283 C = 7696.590725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.124 3.876 10 C -0.204 4.204 11 C 0.089 3.911 12 N -0.551 5.551 13 C 0.143 3.857 14 C -0.040 4.040 15 C -0.062 4.062 16 C -0.076 4.076 17 Cl -0.060 7.060 18 C 0.131 3.869 19 O -0.484 6.484 20 C -0.180 4.180 21 C 0.147 3.853 22 F -0.105 7.105 23 C -0.245 4.245 24 H 0.285 0.715 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.152 0.848 28 H 0.391 0.609 29 H 0.147 0.853 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -10.324 0.587 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.117 3.883 10 C -0.226 4.226 11 C -0.064 4.064 12 N -0.266 5.266 13 C 0.009 3.991 14 C -0.042 4.042 15 C -0.082 4.082 16 C -0.103 4.103 17 Cl -0.031 7.031 18 C 0.085 3.915 19 O -0.294 6.294 20 C -0.200 4.200 21 C 0.127 3.873 22 F -0.083 7.083 23 C -0.269 4.269 24 H 0.096 0.904 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.170 0.830 28 H 0.247 0.753 29 H 0.165 0.835 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.471 -10.848 0.871 11.765 hybrid contribution 0.911 1.541 -0.112 1.793 sum 5.382 -9.307 0.759 10.778 Atomic orbital electron populations 1.69761 1.07796 1.29757 1.33411 1.25989 0.94772 1.01703 0.91785 0.86184 0.81016 0.80377 0.78798 1.18163 1.19462 1.19742 1.19648 0.98148 0.90747 1.39820 0.89801 1.17753 0.90833 0.91951 0.87807 1.22336 0.99958 0.98343 1.01941 1.21984 0.98125 0.88213 0.98031 1.67433 1.13742 1.29196 1.16192 1.18802 0.93678 0.89574 0.97055 1.18901 0.94846 0.92419 0.98063 1.20983 0.95073 0.96513 0.95603 1.21132 0.92952 0.94416 1.01798 1.98353 1.38082 1.98492 1.68206 1.17724 0.93476 0.84228 0.96071 1.84831 1.64404 1.30057 1.50157 1.21192 0.99279 0.97642 1.01890 1.17528 0.85153 0.92390 0.92252 1.91605 1.48756 1.96795 1.71106 1.21820 1.04161 0.92748 1.08146 0.90429 0.85327 0.85750 0.83042 0.75254 0.83541 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.00 10.90 55.55 0.61 -18.39 16 2 C 0.08 1.83 5.19 -17.34 -0.09 1.74 16 3 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.45 -11.26 9.12 -37.65 -0.34 -11.60 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.16 5.61 -106.56 -0.60 2.56 16 10 C -0.20 -5.07 8.80 -38.67 -0.34 -5.41 16 11 C 0.09 2.08 11.15 -17.70 -0.20 1.89 16 12 N -0.55 -13.12 8.29 -9.96 -0.08 -13.20 16 13 C 0.14 3.24 6.73 -83.05 -0.56 2.68 16 14 C -0.04 -0.76 5.88 -104.82 -0.62 -1.38 16 15 C -0.06 -1.01 9.18 -39.24 -0.36 -1.37 16 16 C -0.08 -1.09 6.33 -39.41 -0.25 -1.33 16 17 Cl -0.06 -0.77 28.49 -51.86 -1.48 -2.25 16 18 C 0.13 1.75 6.70 -39.11 -0.26 1.49 16 19 O -0.48 -5.33 12.94 -19.31 -0.25 -5.58 16 20 C -0.18 -2.53 9.95 -39.42 -0.39 -2.92 16 21 C 0.15 2.58 7.27 -39.10 -0.28 2.30 16 22 F -0.10 -2.03 15.30 2.25 0.03 -1.99 16 23 C -0.25 -5.73 9.25 -38.33 -0.35 -6.08 16 24 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 25 H 0.13 3.24 6.16 -52.49 -0.32 2.91 16 26 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 27 H 0.15 2.37 6.17 -52.49 -0.32 2.05 16 28 H 0.39 2.42 9.06 45.56 0.41 2.83 16 29 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.11 2.23 6.18 -52.49 -0.32 1.91 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -27.98 287.87 -7.46 -35.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -0.95 Total: 6.66 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -4.65 Total: -17.45 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.52 Total: -31.59 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.25 Total: -5.58 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.98 -7.46 -35.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245669393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.826 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds