Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48503 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47095 * 300.00270 * 3 2 1 6 6 H 1.48502 * 109.46928 * 60.00055 * 3 2 1 7 7 C 1.40116 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.40719 * 119.99868 * 0.02562 * 7 2 1 10 10 N 1.33729 * 119.94849 * 359.97438 * 9 7 2 11 11 C 1.31274 * 121.63774 * 179.97438 * 10 9 7 12 12 C 1.39091 * 121.36310 * 359.97438 * 11 10 9 13 13 C 1.38306 * 119.74425 * 0.02562 * 12 11 10 14 14 C 1.39795 * 118.47640 * 359.97438 * 13 12 11 15 15 C 1.47613 * 120.66213 * 179.97438 * 14 13 12 16 16 C 1.39840 * 120.10677 * 64.75520 * 15 14 13 17 17 C 1.37754 * 119.91333 * 179.72077 * 16 15 14 18 18 Cl 1.73602 * 119.93378 * 180.24894 * 17 16 15 19 19 C 1.39190 * 120.13652 * 0.52691 * 17 16 15 20 20 O 1.35806 * 119.89172 * 179.74519 * 19 17 16 21 21 C 1.38850 * 120.21586 * 359.76395 * 19 17 16 22 22 C 1.38036 * 120.08610 * 359.95861 * 21 19 17 23 23 F 1.35104 * 120.06645 * 180.02562 * 22 21 19 24 24 H 0.97003 * 119.99419 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.31282 * 179.72657 * 11 10 9 26 26 H 1.07998 * 120.12377 * 179.97438 * 12 11 10 27 27 H 1.08010 * 120.76264 * 179.97438 * 13 12 11 28 28 H 1.07995 * 120.04250 * 359.97438 * 16 15 14 29 29 H 0.96701 * 113.99823 * 270.02038 * 20 19 17 30 30 H 1.08009 * 119.95762 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8826 2.3964 1.2125 7 6 2.0078 -1.2134 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3042 -2.4321 -0.0016 10 7 -0.0330 -2.4309 -0.0016 11 6 -0.7226 -3.5479 -0.0031 12 6 -0.0923 -4.7878 -0.0053 13 6 1.2891 -4.8553 -0.0054 14 6 2.0148 -3.6604 -0.0038 15 6 3.4908 -3.6762 -0.0033 16 6 4.1872 -4.1984 -1.0978 17 6 5.5647 -4.2058 -1.0956 18 17 6.4297 -4.8480 -2.4568 19 6 6.2644 -3.7048 -0.0016 20 8 7.6224 -3.7193 -0.0025 21 6 5.5786 -3.1905 1.0906 22 6 4.1984 -3.1734 1.0956 23 9 3.5315 -2.6724 2.1584 24 1 -0.4849 0.8401 -0.0004 25 1 -1.8017 -3.5031 0.0014 26 1 -0.6794 -5.6943 -0.0061 27 1 1.7956 -5.8093 -0.0067 28 1 3.6457 -4.5915 -1.9455 29 1 8.0074 -4.5248 0.3692 30 1 6.1258 -2.8032 1.9375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245670552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = -38.278484 kcal Electronic energy + Delta-G solvation = -20549.073244 eV Core-core repulsion = 17056.695501 eV Total energy + Delta-G solvation = -3492.377743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.24559 -39.47928 -38.23022 -36.47446 -36.09171 -33.79576 -31.75350 -30.39218 -30.18547 -28.02586 -25.75680 -23.22993 -22.43005 -21.49155 -20.56134 -18.54630 -17.61624 -16.55309 -16.41542 -16.08166 -15.63009 -15.03990 -14.60532 -14.38988 -14.21007 -13.69906 -13.52455 -13.16114 -12.71329 -12.51820 -12.23120 -11.96878 -11.50466 -11.29751 -11.21870 -11.11414 -10.93283 -10.84882 -10.59556 -10.43689 -10.01955 -9.52588 -8.75090 -8.39958 -8.10008 -7.73021 -7.51368 -6.56853 -4.68293 1.20410 1.34789 2.26925 2.57592 2.83527 3.02906 3.08248 3.13391 3.67029 3.85009 4.08671 4.60729 4.81943 4.95337 5.29407 5.50456 5.70755 5.82501 5.96473 5.99892 6.05288 6.30226 6.33894 6.45935 6.59277 6.74504 6.92349 7.00538 7.18212 7.40868 7.55989 7.62376 7.87585 8.07632 8.47540 8.76143 9.93873 10.12991 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.006565 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.698758 B = 4263.704882 C = 5209.970298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.408 4.408 8 H 0.084 0.916 9 C 0.274 3.726 10 N -0.479 5.479 11 C 0.138 3.862 12 C -0.322 4.322 13 C -0.023 4.023 14 C -0.254 4.254 15 C 0.006 3.994 16 C -0.076 4.076 17 C -0.070 4.070 18 Cl -0.069 7.069 19 C 0.115 3.885 20 O -0.485 6.485 21 C -0.174 4.174 22 C 0.128 3.872 23 F -0.119 7.119 24 H 0.276 0.724 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.387 0.613 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -6.079 0.083 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.158 4.158 3 Si 0.727 3.273 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.437 4.437 8 H 0.102 0.898 9 C 0.152 3.848 10 N -0.190 5.190 11 C -0.032 4.032 12 C -0.345 4.345 13 C -0.048 4.048 14 C -0.259 4.259 15 C 0.004 3.996 16 C -0.095 4.095 17 C -0.097 4.097 18 Cl -0.040 7.040 19 C 0.069 3.931 20 O -0.294 6.294 21 C -0.194 4.194 22 C 0.108 3.892 23 F -0.097 7.097 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.159 0.841 29 H 0.242 0.758 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.265 -4.549 -0.250 9.438 hybrid contribution 0.795 -0.557 0.277 1.009 sum 9.060 -5.106 0.027 10.400 Atomic orbital electron populations 1.70120 1.07277 1.28188 1.26728 1.26126 0.94936 1.01346 0.93434 0.86308 0.81191 0.80946 0.78882 1.18056 1.19475 1.19457 1.19606 0.94416 0.89449 1.40234 0.89841 1.18464 0.87968 0.90585 0.87830 1.68789 1.06864 1.26566 1.16807 1.22658 0.98922 0.88825 0.92761 1.21195 0.94448 0.97958 1.20898 1.20837 0.93834 0.95368 0.94744 1.19024 0.89158 0.95007 1.22713 1.18734 0.94253 0.95634 0.91003 1.21030 0.90653 0.99412 0.98387 1.21197 0.92585 1.04992 0.90935 1.98336 1.77053 1.85066 1.43590 1.17687 0.83020 1.00331 0.92033 1.84838 1.15310 1.44165 1.85092 1.21123 0.92739 1.05643 0.99851 1.17758 0.88802 0.97396 0.85251 1.91547 1.80641 1.84331 1.53199 0.91275 0.86179 0.88462 0.88431 0.84096 0.75783 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.18 11.46 55.56 0.64 -17.54 16 2 C 0.07 1.72 5.50 -17.32 -0.10 1.62 16 3 Si 0.90 18.55 29.56 -169.99 -5.03 13.52 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.41 -10.61 8.04 -37.94 -0.31 -10.91 16 8 H 0.08 2.11 6.04 -52.49 -0.32 1.79 16 9 C 0.27 7.20 6.46 -84.70 -0.55 6.65 16 10 N -0.48 -12.77 7.85 -10.90 -0.09 -12.86 16 11 C 0.14 3.21 11.17 -17.47 -0.20 3.01 16 12 C -0.32 -6.86 10.10 -39.24 -0.40 -7.25 16 13 C -0.02 -0.50 9.88 -38.97 -0.38 -0.88 16 14 C -0.25 -5.87 5.06 -104.09 -0.53 -6.40 16 15 C 0.01 0.12 4.47 -104.80 -0.47 -0.35 16 16 C -0.08 -1.33 9.52 -39.16 -0.37 -1.71 16 17 C -0.07 -1.11 6.33 -39.40 -0.25 -1.36 16 18 Cl -0.07 -0.97 28.49 -51.86 -1.48 -2.44 16 19 C 0.12 1.74 6.71 -39.00 -0.26 1.48 16 20 O -0.48 -6.17 12.94 -19.13 -0.25 -6.41 16 21 C -0.17 -2.80 9.95 -39.43 -0.39 -3.19 16 22 C 0.13 2.48 5.98 -38.98 -0.23 2.24 16 23 F -0.12 -2.55 16.15 2.25 0.04 -2.51 16 24 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 25 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.39 2.99 9.06 45.56 0.41 3.40 16 30 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -28.91 290.61 -7.36 -36.28 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.15 Total: 4.63 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -4.43 Total: -17.04 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.55 Total: -30.40 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.25 Total: -6.41 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.91 -7.36 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245670552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds