Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48503 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47095 * 300.00270 * 3 2 1 6 6 H 1.48502 * 109.46928 * 60.00055 * 3 2 1 7 7 C 1.40116 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.40719 * 119.99868 * 0.02562 * 7 2 1 10 10 N 1.33729 * 119.94849 * 359.97438 * 9 7 2 11 11 C 1.31274 * 121.63774 * 179.97438 * 10 9 7 12 12 C 1.39091 * 121.36310 * 359.97438 * 11 10 9 13 13 C 1.38306 * 119.74425 * 0.02562 * 12 11 10 14 14 C 1.39795 * 118.47640 * 359.97438 * 13 12 11 15 15 C 1.47613 * 120.66213 * 179.97438 * 14 13 12 16 16 C 1.39840 * 120.10677 * 64.75520 * 15 14 13 17 17 C 1.37754 * 119.91333 * 179.72077 * 16 15 14 18 18 Cl 1.73602 * 119.93378 * 180.24894 * 17 16 15 19 19 C 1.39190 * 120.13652 * 0.52691 * 17 16 15 20 20 O 1.35806 * 119.89172 * 179.74519 * 19 17 16 21 21 C 1.38850 * 120.21586 * 359.76395 * 19 17 16 22 22 C 1.38036 * 120.08610 * 359.95861 * 21 19 17 23 23 F 1.35104 * 120.06645 * 180.02562 * 22 21 19 24 24 H 0.97003 * 119.99419 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.31282 * 179.72657 * 11 10 9 26 26 H 1.07998 * 120.12377 * 179.97438 * 12 11 10 27 27 H 1.08010 * 120.76264 * 179.97438 * 13 12 11 28 28 H 1.07995 * 120.04250 * 359.97438 * 16 15 14 29 29 H 0.96701 * 113.99823 * 270.02038 * 20 19 17 30 30 H 1.08009 * 119.95762 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8826 2.3964 1.2125 7 6 2.0078 -1.2134 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3042 -2.4321 -0.0016 10 7 -0.0330 -2.4309 -0.0016 11 6 -0.7226 -3.5479 -0.0031 12 6 -0.0923 -4.7878 -0.0053 13 6 1.2891 -4.8553 -0.0054 14 6 2.0148 -3.6604 -0.0038 15 6 3.4908 -3.6762 -0.0033 16 6 4.1872 -4.1984 -1.0978 17 6 5.5647 -4.2058 -1.0956 18 17 6.4297 -4.8480 -2.4568 19 6 6.2644 -3.7048 -0.0016 20 8 7.6224 -3.7193 -0.0025 21 6 5.5786 -3.1905 1.0906 22 6 4.1984 -3.1734 1.0956 23 9 3.5315 -2.6724 2.1584 24 1 -0.4849 0.8401 -0.0004 25 1 -1.8017 -3.5031 0.0014 26 1 -0.6794 -5.6943 -0.0061 27 1 1.7956 -5.8093 -0.0067 28 1 3.6457 -4.5915 -1.9455 29 1 8.0074 -4.5248 0.3692 30 1 6.1258 -2.8032 1.9375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245670552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = -55.564947 kcal Electronic energy + Delta-G solvation = -20549.822841 eV Core-core repulsion = 17056.695501 eV Total energy + Delta-G solvation = -3493.127340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.78551 -40.82102 -39.87364 -37.66879 -37.35486 -35.59665 -33.32746 -32.16302 -31.54327 -29.55754 -27.53522 -24.69034 -23.84599 -23.23917 -22.13044 -19.75298 -19.43223 -17.98151 -17.85704 -17.42548 -17.26240 -16.56624 -16.17308 -15.98719 -15.80664 -15.07903 -14.91248 -14.59732 -14.33421 -14.00596 -13.76512 -13.59785 -13.07804 -12.92517 -12.84661 -12.64847 -12.32911 -12.18909 -12.09114 -11.75759 -11.61463 -11.29596 -10.26100 -9.96276 -9.66886 -9.53772 -9.13322 -8.35944 -6.54558 -0.14296 0.01876 0.81640 1.03508 1.13879 1.34837 1.48431 1.48859 2.16573 2.32575 2.79309 2.89212 3.47246 3.66757 3.83604 3.90798 4.21004 4.29494 4.40364 4.62772 4.63732 4.76053 4.91753 4.94864 4.98731 5.16259 5.23041 5.43702 5.59057 5.68229 5.85162 6.10474 6.24496 6.66265 6.72136 6.92477 8.13837 8.36321 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.006565 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.698758 B = 4263.704882 C = 5209.970298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.027 3.973 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.440 4.440 8 H 0.080 0.920 9 C 0.244 3.756 10 N -0.519 5.519 11 C 0.113 3.887 12 C -0.311 4.311 13 C -0.034 4.034 14 C -0.254 4.254 15 C -0.024 4.024 16 C -0.072 4.072 17 C -0.071 4.071 18 Cl -0.048 7.048 19 C 0.139 3.861 20 O -0.483 6.483 21 C -0.166 4.166 22 C 0.107 3.893 23 F -0.140 7.140 24 H 0.281 0.719 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.414 0.586 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 -7.071 -0.238 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.098 0.902 9 C 0.121 3.879 10 N -0.232 5.232 11 C -0.054 4.054 12 C -0.334 4.334 13 C -0.058 4.058 14 C -0.258 4.258 15 C -0.026 4.026 16 C -0.091 4.091 17 C -0.099 4.099 18 Cl -0.019 7.019 19 C 0.092 3.908 20 O -0.297 6.297 21 C -0.186 4.186 22 C 0.088 3.912 23 F -0.118 7.118 24 H 0.092 0.908 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.274 0.726 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.570 -5.595 -0.568 11.973 hybrid contribution 0.223 -0.489 0.335 0.634 sum 10.793 -6.084 -0.233 12.392 Atomic orbital electron populations 1.70198 1.08653 1.29229 1.28553 1.26928 0.95680 1.04332 0.92652 0.85319 0.79548 0.76773 0.79271 1.18129 1.18534 1.18714 1.19746 0.94341 0.90401 1.42568 0.90190 1.18881 0.88382 0.92116 0.88568 1.68706 1.07641 1.28459 1.18362 1.23100 0.99988 0.89144 0.93161 1.21571 0.94932 0.98435 1.18415 1.21261 0.94087 0.96261 0.94194 1.19332 0.91104 0.94597 1.20800 1.18685 0.93037 0.98260 0.92635 1.20991 0.91510 0.98961 0.97633 1.21237 0.92161 1.04620 0.91844 1.98347 1.76330 1.84676 1.42502 1.17644 0.84032 0.98106 0.90987 1.84781 1.13529 1.46072 1.85293 1.21308 0.91360 1.04950 1.00936 1.18002 0.90046 0.98308 0.84885 1.91489 1.81318 1.84879 1.54112 0.90795 0.84314 0.85108 0.85265 0.83707 0.72588 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.09 11.46 21.85 0.25 -39.84 16 2 C 0.03 1.39 5.50 85.31 0.47 1.86 16 3 Si 0.97 38.91 29.56 68.60 2.03 40.94 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.44 -23.79 8.04 23.33 0.19 -23.60 16 8 H 0.08 4.20 6.04 -2.91 -0.02 4.18 16 9 C 0.24 13.27 6.46 40.37 0.26 13.53 16 10 N -0.52 -28.69 7.85 -188.39 -1.48 -30.17 16 11 C 0.11 5.33 11.17 84.98 0.95 6.28 16 12 C -0.31 -12.93 10.10 22.49 0.23 -12.70 16 13 C -0.03 -1.41 9.88 22.66 0.22 -1.19 16 14 C -0.25 -11.87 5.06 -19.52 -0.10 -11.97 16 15 C -0.02 -0.97 4.47 -19.98 -0.09 -1.06 16 16 C -0.07 -2.44 9.52 22.54 0.21 -2.23 16 17 C -0.07 -2.08 6.33 22.38 0.14 -1.93 16 18 Cl -0.05 -1.18 28.49 -2.72 -0.08 -1.26 16 19 C 0.14 3.77 6.71 22.65 0.15 3.92 16 20 O -0.48 -10.26 12.94 -91.37 -1.18 -11.44 16 21 C -0.17 -4.99 9.95 22.37 0.22 -4.77 16 22 C 0.11 4.12 5.98 22.66 0.14 4.26 16 23 F -0.14 -6.11 16.15 44.97 0.73 -5.38 16 24 H 0.28 13.61 8.29 -92.71 -0.77 12.84 16 25 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 29 H 0.41 4.42 9.06 -74.06 -0.67 3.75 16 30 H 0.17 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -64.53 290.61 3.81 -60.72 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.55 Total: 16.04 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 3.00 Total: -29.61 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.23 Total: -70.01 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.18 Total: -11.44 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.73 Total: -5.38 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -64.53 3.81 -60.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245670552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.154 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds