Wall clock time and date at job start Tue Mar 31 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48500 * 109.47039 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47305 * 119.99662 * 3 2 1 6 6 H 1.48509 * 109.46782 * 239.99737 * 3 2 1 7 7 C 1.40021 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00013 * 2.55980 * 7 2 1 9 9 C 1.41435 * 120.00323 * 182.55862 * 7 2 1 10 10 C 1.40444 * 119.77967 * 186.80199 * 9 7 2 11 11 C 1.39374 * 118.82678 * 179.75697 * 10 9 7 12 12 C 1.48284 * 120.82582 * 180.25784 * 11 10 9 13 13 C 1.39429 * 120.07889 * 130.25112 * 12 11 10 14 14 C 1.37927 * 119.94497 * 180.02562 * 13 12 11 15 15 Cl 1.73606 * 119.95026 * 180.02562 * 14 13 12 16 16 C 1.39005 * 120.10045 * 359.97438 * 14 13 12 17 17 O 1.35873 * 119.92213 * 180.02562 * 16 14 13 18 18 C 1.38723 * 120.15517 * 0.02562 * 16 14 13 19 19 C 1.38173 * 120.05352 * 359.67733 * 18 16 14 20 20 F 1.35109 * 120.05022 * 180.32357 * 19 18 16 21 21 C 1.40088 * 118.35027 * 0.50510 * 11 10 9 22 22 C 1.38454 * 119.41871 * 359.73658 * 21 11 10 23 23 N 1.31501 * 121.15645 * 0.02562 * 22 21 11 24 24 H 0.96999 * 119.99756 * 174.85351 * 1 2 3 25 25 H 1.08003 * 120.58105 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.02456 * 359.97438 * 13 12 11 27 27 H 0.96700 * 113.99806 * 89.99715 * 17 16 14 28 28 H 1.08000 * 119.97554 * 179.97438 * 18 16 14 29 29 H 1.08000 * 120.28642 * 179.70357 * 21 11 10 30 30 H 1.07997 * 119.42306 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0951 1.6966 1.2125 6 1 3.0952 1.6965 -1.2126 7 6 2.0076 -1.2126 0.0005 8 1 1.4684 -2.1475 -0.0408 9 6 3.4209 -1.2131 0.0552 10 6 4.1240 -2.4204 -0.0885 11 6 5.5166 -2.3973 -0.0365 12 6 6.3035 -3.6449 -0.1888 13 6 7.3663 -3.6951 -1.0898 14 6 8.0961 -4.8572 -1.2295 15 17 9.4199 -4.9197 -2.3509 16 6 7.7738 -5.9780 -0.4731 17 8 8.4954 -7.1207 -0.6133 18 6 6.7171 -5.9326 0.4246 19 6 5.9857 -4.7699 0.5742 20 9 4.9607 -4.7238 1.4532 21 6 6.1543 -1.1669 0.1684 22 6 5.3911 -0.0200 0.3064 23 7 4.0781 -0.0655 0.2491 24 1 -0.4850 -0.8367 -0.0754 25 1 3.5950 -3.3497 -0.2402 26 1 7.6175 -2.8251 -1.6783 27 1 9.2556 -7.1812 -0.0187 28 1 6.4690 -6.8052 1.0105 29 1 7.2318 -1.1136 0.2188 30 1 5.8827 0.9286 0.4640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245671306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:59 Heat of formation + Delta-G solvation = -55.901015 kcal Electronic energy + Delta-G solvation = -19944.264332 eV Core-core repulsion = 16451.122419 eV Total energy + Delta-G solvation = -3493.141913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.83486 -39.94547 -38.70403 -36.91699 -36.54426 -33.93177 -32.40068 -30.74348 -30.45352 -28.58684 -25.65876 -23.64660 -23.11896 -21.63913 -20.75934 -18.96496 -18.46611 -17.04995 -16.61662 -16.54650 -15.77540 -15.22067 -15.03762 -14.89147 -14.33584 -14.06149 -13.78387 -13.51133 -12.99194 -12.80415 -12.69836 -12.37180 -12.22949 -11.69412 -11.46759 -11.36922 -10.89608 -10.80017 -10.71068 -10.17543 -9.68462 -9.42147 -9.31502 -8.86982 -8.17083 -8.09077 -7.78172 -7.32237 -4.88669 0.66179 0.86019 1.90414 2.30927 2.43849 3.21368 3.58446 3.62714 3.68006 3.99470 4.28199 4.39926 4.47649 4.57157 4.67378 5.02801 5.30977 5.40714 5.51683 5.61121 5.69723 5.84698 5.97928 6.10500 6.31656 6.41605 6.44643 6.81490 7.07499 7.21050 7.24833 7.36757 7.48718 7.97261 8.16097 8.52741 9.35668 9.92251 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.004199 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.294137 B = 6667.250465 C = 7273.689221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.043 3.957 3 Si 1.156 2.844 4 H -0.332 1.332 5 H -0.278 1.278 6 H -0.293 1.293 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.249 3.751 10 C -0.226 4.226 11 C 0.004 3.996 12 C -0.050 4.050 13 C -0.057 4.057 14 C -0.073 4.073 15 Cl -0.056 7.056 16 C 0.134 3.866 17 O -0.483 6.483 18 C -0.171 4.171 19 C 0.132 3.868 20 F -0.120 7.120 21 C -0.300 4.300 22 C 0.155 3.845 23 N -0.572 5.572 24 H 0.284 0.716 25 H 0.107 0.893 26 H 0.150 0.850 27 H 0.393 0.607 28 H 0.150 0.850 29 H 0.107 0.893 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.708 -9.435 -0.418 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.179 4.179 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.206 1.206 6 H -0.221 1.221 7 C -0.498 4.498 8 H 0.101 0.899 9 C 0.126 3.874 10 C -0.248 4.248 11 C -0.002 4.002 12 C -0.051 4.051 13 C -0.076 4.076 14 C -0.101 4.101 15 Cl -0.027 7.027 16 C 0.088 3.912 17 O -0.293 6.293 18 C -0.191 4.191 19 C 0.112 3.888 20 F -0.098 7.098 21 C -0.323 4.323 22 C -0.006 4.006 23 N -0.291 5.291 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.168 0.832 27 H 0.250 0.750 28 H 0.168 0.832 29 H 0.125 0.875 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.539 -7.343 -0.760 16.306 hybrid contribution 0.889 -2.759 0.254 2.910 sum 15.427 -10.103 -0.505 18.448 Atomic orbital electron populations 1.70650 1.08209 1.32903 1.30272 1.27883 0.95276 1.06334 0.88419 0.81809 0.70575 0.69232 0.79368 1.26539 1.20588 1.22072 1.20839 0.90307 0.96424 1.42237 0.89944 1.18565 0.93978 0.86703 0.88130 1.21712 0.91993 0.98945 1.12199 1.18405 0.92718 0.90420 0.98634 1.19026 0.96226 0.93668 0.96165 1.20948 0.92742 0.96846 0.97069 1.21234 0.95200 0.95146 0.98478 1.98365 1.45541 1.98633 1.60176 1.17728 0.93407 0.84997 0.95044 1.84841 1.44303 1.36177 1.64015 1.21181 0.98051 0.98255 1.01575 1.17561 0.87231 0.93597 0.90447 1.91579 1.55771 1.96744 1.65712 1.21096 0.98716 0.92528 1.19985 1.22040 0.89733 0.96694 0.92175 1.66552 1.09302 1.28192 1.25010 0.90490 0.87497 0.83229 0.75002 0.83240 0.87478 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.56 13.65 55.55 0.76 -20.81 16 2 C 0.04 1.14 5.52 -17.35 -0.10 1.05 16 3 Si 1.16 27.97 25.56 -169.99 -4.34 23.62 16 4 H -0.33 -7.95 7.11 56.52 0.40 -7.55 16 5 H -0.28 -6.68 6.67 56.52 0.38 -6.30 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.47 -12.58 9.58 -37.70 -0.36 -12.94 16 8 H 0.08 2.22 8.05 -52.48 -0.42 1.80 16 9 C 0.25 6.37 6.39 -85.02 -0.54 5.83 16 10 C -0.23 -5.21 8.71 -38.33 -0.33 -5.54 16 11 C 0.00 0.08 5.33 -104.65 -0.56 -0.48 16 12 C -0.05 -0.82 5.52 -104.81 -0.58 -1.40 16 13 C -0.06 -0.80 9.32 -39.25 -0.37 -1.17 16 14 C -0.07 -0.92 6.33 -39.41 -0.25 -1.17 16 15 Cl -0.06 -0.63 28.49 -51.86 -1.48 -2.11 16 16 C 0.13 1.58 6.70 -39.12 -0.26 1.32 16 17 O -0.48 -4.67 12.94 -19.34 -0.25 -4.93 16 18 C -0.17 -2.13 9.95 -39.43 -0.39 -2.53 16 19 C 0.13 2.05 7.18 -39.10 -0.28 1.77 16 20 F -0.12 -2.10 15.96 2.25 0.04 -2.07 16 21 C -0.30 -5.80 9.66 -38.81 -0.37 -6.17 16 22 C 0.15 3.25 11.16 -17.61 -0.20 3.05 16 23 N -0.57 -14.13 4.54 -11.22 -0.05 -14.18 16 24 H 0.28 7.32 8.72 -40.82 -0.36 6.96 16 25 H 0.11 2.40 7.86 -52.48 -0.41 1.99 16 26 H 0.15 1.96 8.05 -52.49 -0.42 1.54 16 27 H 0.39 1.91 9.06 45.56 0.41 2.33 16 28 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -29.20 289.28 -6.85 -36.05 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -1.29 Total: -1.58 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.59 Total: -18.37 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.71 Total: -34.99 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.25 Total: -4.93 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.34 Total: 23.62 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.20 -6.85 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.849 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds