Wall clock time and date at job start Tue Mar 31 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48500 * 109.47039 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47305 * 119.99662 * 3 2 1 6 6 H 1.48509 * 109.46782 * 239.99737 * 3 2 1 7 7 C 1.40021 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00013 * 2.55980 * 7 2 1 9 9 C 1.41435 * 120.00323 * 182.55862 * 7 2 1 10 10 C 1.40444 * 119.77967 * 186.80199 * 9 7 2 11 11 C 1.39374 * 118.82678 * 179.75697 * 10 9 7 12 12 C 1.48284 * 120.82582 * 180.25784 * 11 10 9 13 13 C 1.39429 * 120.07889 * 130.25112 * 12 11 10 14 14 C 1.37927 * 119.94497 * 180.02562 * 13 12 11 15 15 Cl 1.73606 * 119.95026 * 180.02562 * 14 13 12 16 16 C 1.39005 * 120.10045 * 359.97438 * 14 13 12 17 17 O 1.35873 * 119.92213 * 180.02562 * 16 14 13 18 18 C 1.38723 * 120.15517 * 0.02562 * 16 14 13 19 19 C 1.38173 * 120.05352 * 359.67733 * 18 16 14 20 20 F 1.35109 * 120.05022 * 180.32357 * 19 18 16 21 21 C 1.40088 * 118.35027 * 0.50510 * 11 10 9 22 22 C 1.38454 * 119.41871 * 359.73658 * 21 11 10 23 23 N 1.31501 * 121.15645 * 0.02562 * 22 21 11 24 24 H 0.96999 * 119.99756 * 174.85351 * 1 2 3 25 25 H 1.08003 * 120.58105 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.02456 * 359.97438 * 13 12 11 27 27 H 0.96700 * 113.99806 * 89.99715 * 17 16 14 28 28 H 1.08000 * 119.97554 * 179.97438 * 18 16 14 29 29 H 1.08000 * 120.28642 * 179.70357 * 21 11 10 30 30 H 1.07997 * 119.42306 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0951 1.6966 1.2125 6 1 3.0952 1.6965 -1.2126 7 6 2.0076 -1.2126 0.0005 8 1 1.4684 -2.1475 -0.0408 9 6 3.4209 -1.2131 0.0552 10 6 4.1240 -2.4204 -0.0885 11 6 5.5166 -2.3973 -0.0365 12 6 6.3035 -3.6449 -0.1888 13 6 7.3663 -3.6951 -1.0898 14 6 8.0961 -4.8572 -1.2295 15 17 9.4199 -4.9197 -2.3509 16 6 7.7738 -5.9780 -0.4731 17 8 8.4954 -7.1207 -0.6133 18 6 6.7171 -5.9326 0.4246 19 6 5.9857 -4.7699 0.5742 20 9 4.9607 -4.7238 1.4532 21 6 6.1543 -1.1669 0.1684 22 6 5.3911 -0.0200 0.3064 23 7 4.0781 -0.0655 0.2491 24 1 -0.4850 -0.8367 -0.0754 25 1 3.5950 -3.3497 -0.2402 26 1 7.6175 -2.8251 -1.6783 27 1 9.2556 -7.1812 -0.0187 28 1 6.4690 -6.8052 1.0105 29 1 7.2318 -1.1136 0.2188 30 1 5.8827 0.9286 0.4640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245671306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:59 Heat of formation + Delta-G solvation = -73.841413 kcal Electronic energy + Delta-G solvation = -19945.042286 eV Core-core repulsion = 16451.122419 eV Total energy + Delta-G solvation = -3493.919867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.09981 -41.08223 -40.29607 -37.90924 -37.53127 -35.80675 -33.89897 -32.36395 -31.72629 -29.88124 -27.50272 -24.96360 -24.31667 -23.16054 -22.39213 -20.32004 -19.89533 -18.19868 -17.99504 -17.64065 -17.16336 -16.69879 -16.62134 -16.24767 -15.76961 -15.30387 -15.08981 -14.83250 -14.58346 -14.51559 -14.09919 -13.95882 -13.78609 -12.96256 -12.72096 -12.60646 -12.34643 -12.22674 -11.96420 -11.76765 -11.63935 -11.31988 -10.74765 -10.02263 -9.92951 -9.67896 -9.45306 -9.27336 -6.86434 -0.47132 -0.19053 0.63940 0.69417 0.95404 1.62429 1.71889 2.08217 2.12654 2.48577 2.63284 2.72301 3.21035 3.36113 3.46359 3.57644 3.94098 3.98168 4.31617 4.43770 4.48323 4.54048 4.65130 4.68347 4.80214 4.93440 5.10304 5.25913 5.34766 5.42934 5.55542 5.75963 5.97466 6.30701 6.61671 6.62232 7.53184 7.93196 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.004199 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.294137 B = 6667.250465 C = 7273.689221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.015 3.985 3 Si 1.191 2.809 4 H -0.331 1.331 5 H -0.275 1.275 6 H -0.292 1.292 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.239 3.761 10 C -0.252 4.252 11 C 0.016 3.984 12 C -0.080 4.080 13 C -0.048 4.048 14 C -0.075 4.075 15 Cl -0.039 7.039 16 C 0.159 3.841 17 O -0.484 6.484 18 C -0.162 4.162 19 C 0.116 3.884 20 F -0.139 7.139 21 C -0.271 4.271 22 C 0.137 3.863 23 N -0.592 5.592 24 H 0.279 0.721 25 H 0.097 0.903 26 H 0.160 0.840 27 H 0.419 0.581 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.119 -10.339 -0.660 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.201 4.201 3 Si 1.023 2.977 4 H -0.265 1.265 5 H -0.202 1.202 6 H -0.220 1.220 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.274 4.274 11 C 0.009 3.991 12 C -0.082 4.082 13 C -0.067 4.067 14 C -0.103 4.103 15 Cl -0.010 7.010 16 C 0.112 3.888 17 O -0.298 6.298 18 C -0.182 4.182 19 C 0.096 3.904 20 F -0.118 7.118 21 C -0.293 4.293 22 C -0.022 4.022 23 N -0.311 5.311 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.281 0.719 28 H 0.191 0.809 29 H 0.168 0.832 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 18.996 -8.263 -0.990 20.739 hybrid contribution -0.004 -2.734 0.297 2.750 sum 18.991 -10.997 -0.693 21.956 Atomic orbital electron populations 1.70674 1.08542 1.32568 1.33564 1.28646 0.95530 1.08038 0.87867 0.81354 0.69830 0.67280 0.79266 1.26516 1.20236 1.21972 1.20758 0.91507 0.95734 1.46450 0.92243 1.18640 0.93717 0.88083 0.88071 1.21691 0.93704 0.97829 1.14170 1.18743 0.91795 0.92648 0.95888 1.18840 0.97759 0.92711 0.98851 1.20953 0.91701 0.97875 0.96139 1.21276 0.95419 0.94871 0.98684 1.98381 1.44516 1.98572 1.59553 1.17715 0.92685 0.85076 0.93306 1.84792 1.45283 1.34824 1.64878 1.21351 0.97397 0.97799 1.01620 1.17827 0.87368 0.94587 0.90628 1.91534 1.56864 1.96907 1.66481 1.21683 1.00842 0.91438 1.15326 1.22813 0.88708 0.99204 0.91503 1.66493 1.11321 1.27958 1.25329 0.91024 0.88443 0.82214 0.71939 0.80933 0.83152 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.35 13.65 21.84 0.30 -47.05 16 2 C 0.02 0.86 5.52 85.29 0.47 1.33 16 3 Si 1.19 57.87 25.56 68.60 1.75 59.62 16 4 H -0.33 -15.81 7.11 99.48 0.71 -15.10 16 5 H -0.27 -13.00 6.67 99.48 0.66 -12.33 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.51 -29.35 9.58 23.49 0.23 -29.12 16 8 H 0.06 3.52 8.05 -2.91 -0.02 3.49 16 9 C 0.24 12.58 6.39 40.19 0.26 12.84 16 10 C -0.25 -11.85 8.71 23.08 0.20 -11.65 16 11 C 0.02 0.60 5.33 -19.88 -0.11 0.50 16 12 C -0.08 -2.48 5.52 -19.99 -0.11 -2.60 16 13 C -0.05 -1.18 9.32 22.48 0.21 -0.97 16 14 C -0.07 -1.58 6.33 22.38 0.14 -1.44 16 15 Cl -0.04 -0.72 28.49 -2.72 -0.08 -0.80 16 16 C 0.16 3.08 6.70 22.57 0.15 3.23 16 17 O -0.48 -7.04 12.94 -92.13 -1.19 -8.23 16 18 C -0.16 -3.53 9.95 22.37 0.22 -3.31 16 19 C 0.12 3.41 7.18 22.58 0.16 3.57 16 20 F -0.14 -4.89 15.96 44.97 0.72 -4.17 16 21 C -0.27 -9.51 9.66 22.77 0.22 -9.29 16 22 C 0.14 5.36 11.16 84.79 0.95 6.30 16 23 N -0.59 -28.92 4.54 -189.40 -0.86 -29.78 16 24 H 0.28 15.48 8.72 -92.71 -0.81 14.67 16 25 H 0.10 4.64 7.86 -2.91 -0.02 4.62 16 26 H 0.16 3.53 8.05 -2.91 -0.02 3.51 16 27 H 0.42 1.87 9.06 -74.06 -0.67 1.20 16 28 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.17 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -66.12 289.28 4.09 -62.03 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 0.46 Total: -1.01 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 2.99 Total: -30.60 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -0.56 Total: -76.84 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.19 Total: -8.23 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.72 Total: -4.17 kcal Atomic # 14 Polarization: 57.87 SS G_CDS: 1.75 Total: 59.62 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -66.12 4.09 -62.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.807 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds