Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86802 * 120.00415 * 2 1 4 4 H 1.48505 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47041 * 299.99596 * 3 2 1 6 6 H 1.48498 * 109.47150 * 59.99999 * 3 2 1 7 7 C 1.40144 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 193.83936 * 7 2 1 9 9 C 1.40837 * 119.99846 * 13.83498 * 7 2 1 10 10 C 1.41154 * 121.11679 * 24.79714 * 9 7 2 11 11 C 1.36417 * 119.11970 * 180.29357 * 10 9 7 12 12 N 1.32259 * 121.53490 * 359.72429 * 11 10 9 13 13 C 1.31622 * 122.52257 * 0.02562 * 12 11 10 14 14 C 1.39440 * 120.63939 * 0.02562 * 13 12 11 15 15 C 1.47658 * 120.79124 * 179.97438 * 14 13 12 16 16 C 1.39810 * 120.10933 * 65.02724 * 15 14 13 17 17 C 1.37776 * 119.91925 * 179.97438 * 16 15 14 18 18 Cl 1.73595 * 119.93332 * 180.02562 * 17 16 15 19 19 C 1.39170 * 120.12799 * 359.97438 * 17 16 15 20 20 O 1.35818 * 119.88915 * 180.02562 * 19 17 16 21 21 C 1.38848 * 120.22214 * 0.02562 * 19 17 16 22 22 C 1.38040 * 120.07977 * 0.02562 * 21 19 17 23 23 F 1.35104 * 120.06853 * 179.97438 * 22 21 19 24 24 H 0.97006 * 119.99460 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.43898 * 0.04148 * 10 9 7 26 26 H 1.08001 * 119.22960 * 179.74298 * 11 10 9 27 27 H 1.07995 * 119.68159 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.03837 * 359.97438 * 16 15 14 29 29 H 0.96701 * 113.99730 * 269.97385 * 20 19 17 30 30 H 1.07993 * 119.96154 * 180.27328 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7012 1.3462 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3964 1.2125 7 6 2.0077 -1.2137 0.0005 8 1 3.0642 -1.2273 0.2243 9 6 1.3341 -2.4158 -0.2906 10 6 0.1539 -2.4215 -1.0649 11 6 -0.4688 -3.6088 -1.3171 12 7 0.0105 -4.7526 -0.8578 13 6 1.1080 -4.8204 -0.1343 14 6 1.8224 -3.6657 0.1830 15 6 3.0536 -3.7377 0.9949 16 6 4.1829 -4.3963 0.4993 17 6 5.3299 -4.4606 1.2600 18 17 6.7326 -5.2777 0.6447 19 6 5.3665 -3.8710 2.5200 20 8 6.4999 -3.9370 3.2655 21 6 4.2482 -3.2156 3.0177 22 6 3.0940 -3.1466 2.2636 23 9 2.0058 -2.5092 2.7482 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2529 -1.4978 -1.4492 26 1 -1.3742 -3.6148 -1.9059 27 1 1.4586 -5.7795 0.2170 28 1 4.1562 -4.8539 -0.4785 29 1 6.5461 -4.7111 3.8432 30 1 4.2826 -2.7557 3.9942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245671465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = -48.992748 kcal Electronic energy + Delta-G solvation = -20551.880198 eV Core-core repulsion = 17059.037850 eV Total energy + Delta-G solvation = -3492.842348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.18721 -39.48675 -38.37127 -36.48465 -36.10551 -34.31019 -31.73974 -30.44434 -29.98427 -27.92172 -26.03375 -23.18627 -22.44315 -21.58740 -20.56720 -18.53631 -17.74324 -16.54177 -16.29166 -16.06761 -15.66122 -15.08512 -14.58711 -14.51171 -14.28972 -13.69320 -13.51301 -13.12883 -12.75815 -12.57592 -12.44539 -12.23335 -11.54117 -11.45795 -11.27193 -11.20208 -11.08368 -10.78716 -10.55888 -10.37150 -9.96280 -9.61137 -8.75938 -8.31232 -8.15199 -7.91850 -7.58355 -6.99334 -4.77477 1.20591 1.35048 2.26872 2.53452 2.70055 2.94545 3.00490 3.13845 3.66867 3.74125 4.08950 4.50151 4.83632 4.95058 5.29556 5.42868 5.56279 5.71000 5.82655 5.99008 6.17554 6.30656 6.37120 6.57172 6.73435 6.77586 7.00573 7.01046 7.19911 7.34914 7.60730 7.68480 7.92850 8.27567 8.54217 8.57398 9.49156 9.87303 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006532 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.266634 B = 4285.533771 C = 5271.834696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.151 3.849 10 C -0.205 4.205 11 C 0.083 3.917 12 N -0.578 5.578 13 C 0.139 3.861 14 C -0.252 4.252 15 C 0.002 3.998 16 C -0.075 4.075 17 C -0.072 4.072 18 Cl -0.069 7.069 19 C 0.118 3.882 20 O -0.485 6.485 21 C -0.177 4.177 22 C 0.137 3.863 23 F -0.116 7.116 24 H 0.286 0.714 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.387 0.613 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 -3.976 4.047 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.100 0.900 9 C 0.143 3.857 10 C -0.227 4.227 11 C -0.064 4.064 12 N -0.292 5.292 13 C -0.020 4.020 14 C -0.258 4.258 15 C 0.000 4.000 16 C -0.094 4.094 17 C -0.100 4.100 18 Cl -0.041 7.041 19 C 0.072 3.928 20 O -0.295 6.295 21 C -0.197 4.197 22 C 0.117 3.883 23 F -0.094 7.094 24 H 0.097 0.903 25 H 0.148 0.852 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.159 0.841 29 H 0.243 0.757 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.356 -4.083 3.498 9.111 hybrid contribution 0.611 1.316 0.570 1.558 sum 7.966 -2.767 4.069 9.363 Atomic orbital electron populations 1.69739 1.07783 1.29906 1.32243 1.26024 0.94810 1.01772 0.91652 0.86209 0.81219 0.80314 0.78983 1.17961 1.19263 1.19489 1.19566 0.96959 0.90454 1.39314 0.90022 1.17684 0.90374 0.90896 0.86713 1.21971 0.99466 0.98419 1.02867 1.21743 0.98073 0.88838 0.97697 1.67329 1.15304 1.29313 1.17256 1.22059 0.90919 0.95416 0.93595 1.19211 0.99731 0.95680 1.11185 1.18703 0.94275 0.95469 0.91583 1.21040 0.89560 0.99166 0.99644 1.21182 0.89890 1.02916 0.95975 1.98336 1.40843 1.77662 1.87214 1.17701 0.86158 0.99002 0.89906 1.84835 1.37059 1.49380 1.58200 1.21133 0.91430 1.04964 1.02136 1.17755 0.83568 0.94666 0.92302 1.91565 1.51972 1.78654 1.87208 0.90257 0.85221 0.86287 0.86029 0.84056 0.75718 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.62 10.81 55.56 0.60 -18.02 16 2 C 0.08 1.86 5.25 -17.32 -0.09 1.77 16 3 Si 0.91 17.82 29.58 -169.99 -5.03 12.80 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.43 -10.71 7.66 -37.88 -0.29 -11.00 16 8 H 0.08 2.01 7.18 -52.48 -0.38 1.63 16 9 C 0.15 3.78 5.50 -106.25 -0.58 3.19 16 10 C -0.21 -5.06 8.72 -39.13 -0.34 -5.40 16 11 C 0.08 1.93 11.08 -18.02 -0.20 1.73 16 12 N -0.58 -13.53 10.32 -13.35 -0.14 -13.67 16 13 C 0.14 3.09 10.92 -17.19 -0.19 2.90 16 14 C -0.25 -5.74 5.07 -104.04 -0.53 -6.27 16 15 C 0.00 0.04 4.50 -104.80 -0.47 -0.44 16 16 C -0.08 -1.29 9.52 -39.16 -0.37 -1.66 16 17 C -0.07 -1.13 6.33 -39.40 -0.25 -1.38 16 18 Cl -0.07 -0.95 28.49 -51.86 -1.48 -2.43 16 19 C 0.12 1.77 6.71 -39.01 -0.26 1.51 16 20 O -0.49 -6.11 12.94 -19.17 -0.25 -6.36 16 21 C -0.18 -2.83 9.95 -39.43 -0.39 -3.23 16 22 C 0.14 2.65 6.57 -38.99 -0.26 2.39 16 23 F -0.12 -2.53 16.20 2.25 0.04 -2.49 16 24 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 25 H 0.13 3.23 6.15 -52.49 -0.32 2.91 16 26 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 27 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 29 H 0.39 2.97 9.06 45.56 0.41 3.38 16 30 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -27.51 290.34 -7.22 -34.72 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -1.11 Total: 6.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -4.22 Total: -15.88 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.46 Total: -31.69 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.25 Total: -6.36 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.48 Total: -2.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.51 -7.22 -34.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.269 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds