Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86802 * 120.00415 * 2 1 4 4 H 1.48505 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47041 * 299.99596 * 3 2 1 6 6 H 1.48498 * 109.47150 * 59.99999 * 3 2 1 7 7 C 1.40144 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 193.83936 * 7 2 1 9 9 C 1.40837 * 119.99846 * 13.83498 * 7 2 1 10 10 C 1.41154 * 121.11679 * 24.79714 * 9 7 2 11 11 C 1.36417 * 119.11970 * 180.29357 * 10 9 7 12 12 N 1.32259 * 121.53490 * 359.72429 * 11 10 9 13 13 C 1.31622 * 122.52257 * 0.02562 * 12 11 10 14 14 C 1.39440 * 120.63939 * 0.02562 * 13 12 11 15 15 C 1.47658 * 120.79124 * 179.97438 * 14 13 12 16 16 C 1.39810 * 120.10933 * 65.02724 * 15 14 13 17 17 C 1.37776 * 119.91925 * 179.97438 * 16 15 14 18 18 Cl 1.73595 * 119.93332 * 180.02562 * 17 16 15 19 19 C 1.39170 * 120.12799 * 359.97438 * 17 16 15 20 20 O 1.35818 * 119.88915 * 180.02562 * 19 17 16 21 21 C 1.38848 * 120.22214 * 0.02562 * 19 17 16 22 22 C 1.38040 * 120.07977 * 0.02562 * 21 19 17 23 23 F 1.35104 * 120.06853 * 179.97438 * 22 21 19 24 24 H 0.97006 * 119.99460 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.43898 * 0.04148 * 10 9 7 26 26 H 1.08001 * 119.22960 * 179.74298 * 11 10 9 27 27 H 1.07995 * 119.68159 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.03837 * 359.97438 * 16 15 14 29 29 H 0.96701 * 113.99730 * 269.97385 * 20 19 17 30 30 H 1.07993 * 119.96154 * 180.27328 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7012 1.3462 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3964 1.2125 7 6 2.0077 -1.2137 0.0005 8 1 3.0642 -1.2273 0.2243 9 6 1.3341 -2.4158 -0.2906 10 6 0.1539 -2.4215 -1.0649 11 6 -0.4688 -3.6088 -1.3171 12 7 0.0105 -4.7526 -0.8578 13 6 1.1080 -4.8204 -0.1343 14 6 1.8224 -3.6657 0.1830 15 6 3.0536 -3.7377 0.9949 16 6 4.1829 -4.3963 0.4993 17 6 5.3299 -4.4606 1.2600 18 17 6.7326 -5.2777 0.6447 19 6 5.3665 -3.8710 2.5200 20 8 6.4999 -3.9370 3.2655 21 6 4.2482 -3.2156 3.0177 22 6 3.0940 -3.1466 2.2636 23 9 2.0058 -2.5092 2.7482 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2529 -1.4978 -1.4492 26 1 -1.3742 -3.6148 -1.9059 27 1 1.4586 -5.7795 0.2170 28 1 4.1562 -4.8539 -0.4785 29 1 6.5461 -4.7111 3.8432 30 1 4.2826 -2.7557 3.9942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245671465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = -65.012569 kcal Electronic energy + Delta-G solvation = -20552.574870 eV Core-core repulsion = 17059.037850 eV Total energy + Delta-G solvation = -3493.537020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.74400 -40.84259 -39.99717 -37.66796 -37.35183 -36.08774 -33.32479 -32.09722 -31.43442 -29.46549 -27.80185 -24.64244 -23.86948 -23.32568 -22.14598 -19.74095 -19.52851 -17.91132 -17.79140 -17.41715 -17.29131 -16.64890 -16.27079 -16.01479 -15.83214 -15.09174 -14.90997 -14.58397 -14.39521 -14.21498 -13.89789 -13.75822 -13.23735 -13.08302 -12.85454 -12.68774 -12.27517 -12.13965 -11.96455 -11.81086 -11.60202 -11.33494 -10.20723 -9.97929 -9.82239 -9.62419 -9.17700 -8.73236 -6.61163 -0.13689 0.02810 0.78515 0.95488 1.07829 1.33902 1.47579 1.50160 2.12110 2.33325 2.71302 2.90414 3.48551 3.59717 3.74216 3.86298 4.03673 4.22072 4.47551 4.62496 4.65379 4.88336 4.92682 4.98591 5.01767 5.15406 5.29806 5.41677 5.50950 5.64737 5.87363 6.12495 6.45356 6.72360 6.73206 6.75792 7.68280 8.15589 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006532 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.266634 B = 4285.533771 C = 5271.834696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.042 3.958 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.075 0.925 9 C 0.123 3.877 10 C -0.228 4.228 11 C 0.080 3.920 12 N -0.589 5.589 13 C 0.129 3.871 14 C -0.250 4.250 15 C -0.027 4.027 16 C -0.070 4.070 17 C -0.073 4.073 18 Cl -0.048 7.048 19 C 0.141 3.859 20 O -0.484 6.484 21 C -0.169 4.169 22 C 0.115 3.885 23 F -0.139 7.139 24 H 0.295 0.705 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.414 0.586 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 -4.242 4.882 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.093 0.907 9 C 0.115 3.885 10 C -0.251 4.251 11 C -0.068 4.068 12 N -0.303 5.303 13 C -0.029 4.029 14 C -0.255 4.255 15 C -0.029 4.029 16 C -0.088 4.088 17 C -0.100 4.100 18 Cl -0.019 7.019 19 C 0.095 3.905 20 O -0.297 6.297 21 C -0.188 4.188 22 C 0.095 3.905 23 F -0.118 7.118 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.159 0.841 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.274 0.726 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.525 -4.393 4.353 11.357 hybrid contribution 0.089 1.255 0.381 1.315 sum 9.614 -3.138 4.734 11.167 Atomic orbital electron populations 1.69772 1.08972 1.31182 1.32749 1.26782 0.95494 1.04505 0.90890 0.85264 0.79562 0.76355 0.79428 1.18216 1.18149 1.18839 1.19633 0.96707 0.91311 1.40654 0.90719 1.18073 0.90966 0.92209 0.87260 1.21972 1.00374 0.98560 1.04151 1.22062 0.98649 0.88461 0.97611 1.67395 1.15904 1.29222 1.17805 1.22522 0.90520 0.96589 0.93240 1.19488 1.00640 0.94992 1.10381 1.18628 0.94254 0.97968 0.92022 1.21012 0.89371 0.98495 0.99967 1.21222 0.90093 1.02674 0.96035 1.98348 1.39349 1.77119 1.87041 1.17650 0.86129 0.97015 0.89701 1.84778 1.35459 1.51096 1.58406 1.21298 0.90400 1.04525 1.02607 1.18009 0.84100 0.95517 0.92895 1.91500 1.53367 1.79388 1.87507 0.89428 0.86297 0.84076 0.83283 0.83492 0.72561 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.61 10.81 21.86 0.24 -39.37 16 2 C 0.04 2.01 5.25 85.32 0.45 2.46 16 3 Si 0.97 36.61 29.58 68.60 2.03 38.64 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.45 -23.03 7.66 23.37 0.18 -22.85 16 8 H 0.07 3.77 7.18 -2.91 -0.02 3.75 16 9 C 0.12 6.32 5.50 -20.92 -0.12 6.21 16 10 C -0.23 -11.64 8.72 22.56 0.20 -11.45 16 11 C 0.08 3.76 11.08 84.20 0.93 4.69 16 12 N -0.59 -27.68 10.32 -196.15 -2.02 -29.70 16 13 C 0.13 5.73 10.92 85.01 0.93 6.66 16 14 C -0.25 -11.54 5.07 -19.49 -0.10 -11.64 16 15 C -0.03 -1.06 4.50 -19.98 -0.09 -1.15 16 16 C -0.07 -2.30 9.52 22.54 0.21 -2.09 16 17 C -0.07 -2.08 6.33 22.38 0.14 -1.94 16 18 Cl -0.05 -1.16 28.49 -2.72 -0.08 -1.24 16 19 C 0.14 3.80 6.71 22.64 0.15 3.95 16 20 O -0.48 -10.17 12.94 -91.51 -1.18 -11.35 16 21 C -0.17 -5.06 9.95 22.37 0.22 -4.84 16 22 C 0.11 4.39 6.57 22.66 0.15 4.54 16 23 F -0.14 -6.20 16.20 44.97 0.73 -5.47 16 24 H 0.29 13.01 8.29 -92.70 -0.77 12.24 16 25 H 0.12 6.20 6.15 -2.91 -0.02 6.18 16 26 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 27 H 0.15 5.61 8.06 -2.91 -0.02 5.59 16 28 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.41 4.40 9.06 -74.06 -0.67 3.72 16 30 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -59.82 290.34 3.52 -56.30 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.55 Total: 19.63 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.26 Total: -27.44 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.79 Total: -69.07 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.18 Total: -11.35 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.73 Total: -5.47 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -59.82 3.52 -56.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.711 kcal (2) G-P(sol) polarization free energy of solvation -59.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds