Wall clock time and date at job start Tue Mar 31 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27352 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27553 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27511 * 3 2 1 7 7 C 1.40065 * 119.99823 * 180.27460 * 2 1 3 8 8 H 1.07999 * 119.99981 * 179.72751 * 7 2 1 9 9 C 1.40906 * 119.99662 * 359.72516 * 7 2 1 10 10 C 1.40923 * 119.66944 * 179.72967 * 9 7 2 11 11 C 1.36611 * 119.26603 * 179.70196 * 10 9 7 12 12 C 1.40372 * 118.59879 * 0.55788 * 11 10 9 13 13 C 1.47786 * 120.34920 * 179.74223 * 12 11 10 14 14 C 1.39756 * 120.09640 * 129.98216 * 13 12 11 15 15 C 1.37787 * 119.91908 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 119.93727 * 180.02562 * 15 14 13 17 17 C 1.39171 * 120.12927 * 359.97334 * 15 14 13 18 18 O 1.35810 * 119.89945 * 180.02562 * 17 15 14 19 19 C 1.38843 * 120.19897 * 0.04580 * 17 15 14 20 20 C 1.38051 * 120.08162 * 359.70072 * 19 17 15 21 21 F 1.35099 * 120.06640 * 180.29627 * 20 19 17 22 22 C 1.40186 * 119.29533 * 359.72684 * 12 11 10 23 23 N 1.31167 * 120.67564 * 359.97151 * 22 12 11 24 24 H 0.97000 * 120.00069 * 359.72763 * 1 2 3 25 25 H 1.08004 * 120.37005 * 359.97438 * 10 9 7 26 26 H 1.07993 * 120.69562 * 180.28146 * 11 10 9 27 27 H 1.07999 * 120.04570 * 359.97438 * 14 13 12 28 28 H 0.96698 * 114.00136 * 90.00005 * 18 17 15 29 29 H 1.08002 * 119.95813 * 179.97438 * 19 17 15 30 30 H 1.07999 * 119.66472 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4831 2.0497 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5419 1.4384 0.6942 7 6 2.0077 -1.2130 -0.0058 8 1 3.0877 -1.2130 -0.0103 9 6 1.3030 -2.4332 -0.0058 10 6 2.0145 -3.6496 -0.0175 11 6 1.3231 -4.8278 -0.0112 12 6 -0.0799 -4.7836 -0.0052 13 6 -0.8664 -6.0347 -0.0040 14 6 -1.8933 -6.2161 0.9265 15 6 -2.6247 -7.3838 0.9239 16 17 -3.9007 -7.6093 2.0791 17 6 -2.3431 -8.3824 -0.0036 18 8 -3.0673 -9.5313 -0.0022 19 6 -1.3239 -8.2078 -0.9301 20 6 -0.5892 -7.0391 -0.9385 21 9 0.3986 -6.8670 -1.8440 22 6 -0.7269 -3.5400 -0.0001 23 7 -0.0350 -2.4256 -0.0002 24 1 -0.4850 0.8400 0.0040 25 1 3.0945 -3.6504 -0.0268 26 1 1.8450 -5.7733 -0.0153 27 1 -2.1133 -5.4420 1.6467 28 1 -3.8523 -9.5022 -0.5661 29 1 -1.1084 -8.9855 -1.6479 30 1 -1.8061 -3.4989 0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245672607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:34 Heat of formation + Delta-G solvation = -42.140738 kcal Electronic energy + Delta-G solvation = -19777.375694 eV Core-core repulsion = 16284.830471 eV Total energy + Delta-G solvation = -3492.545223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.53603 -39.58477 -38.29630 -36.60208 -36.24298 -33.88796 -31.50900 -30.77631 -30.21567 -28.49204 -25.58772 -23.15593 -22.54387 -21.66614 -20.69815 -18.68572 -17.71547 -16.69659 -16.44210 -16.27755 -15.67793 -15.34523 -14.71600 -14.42135 -14.15292 -13.82376 -13.70791 -13.25065 -12.74013 -12.65210 -12.35293 -12.17634 -11.53589 -11.33496 -11.28505 -11.17896 -11.06104 -10.89649 -10.70825 -10.51403 -10.12821 -9.60221 -8.92558 -8.52313 -8.32009 -7.76506 -7.48674 -6.62925 -4.72688 1.01676 1.18039 2.17010 2.52034 2.96097 2.97343 2.99611 3.02602 3.55266 3.77588 3.98330 4.51690 4.63615 4.81485 5.15627 5.36929 5.64570 5.71683 5.84138 5.91151 6.01695 6.15278 6.23873 6.37905 6.60867 6.68821 6.83607 6.88496 7.20198 7.38776 7.49901 7.56566 7.83666 7.99703 8.40905 8.69932 9.89573 10.06415 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.003801 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.347625 B = 7365.209744 C = 8126.793039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.063 3.937 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.406 4.406 8 H 0.089 0.911 9 C 0.253 3.747 10 C -0.271 4.271 11 C -0.024 4.024 12 C -0.293 4.293 13 C 0.005 3.995 14 C -0.084 4.084 15 C -0.062 4.062 16 Cl -0.065 7.065 17 C 0.107 3.893 18 O -0.485 6.485 19 C -0.164 4.164 20 C 0.102 3.898 21 F -0.129 7.129 22 C 0.164 3.836 23 N -0.488 5.488 24 H 0.278 0.722 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.145 0.855 28 H 0.388 0.612 29 H 0.142 0.858 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -9.748 -0.313 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.164 4.164 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.436 4.436 8 H 0.107 0.893 9 C 0.131 3.869 10 C -0.293 4.293 11 C -0.047 4.047 12 C -0.298 4.298 13 C 0.002 3.998 14 C -0.103 4.103 15 C -0.089 4.089 16 Cl -0.037 7.037 17 C 0.061 3.939 18 O -0.295 6.295 19 C -0.184 4.184 20 C 0.083 3.917 21 F -0.107 7.107 22 C -0.005 4.005 23 N -0.199 5.199 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.162 0.838 28 H 0.244 0.756 29 H 0.160 0.840 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.438 -8.935 0.149 10.461 hybrid contribution 0.479 -0.118 -0.419 0.647 sum -4.959 -9.053 -0.270 10.326 Atomic orbital electron populations 1.70123 1.07387 1.28463 1.25836 1.26200 0.95033 1.01545 0.93670 0.86234 0.80493 0.80202 0.79497 1.19135 1.19837 1.18294 1.19789 0.94735 0.89583 1.39446 0.89332 1.18658 0.88518 0.91953 0.87806 1.21394 0.98951 0.93398 1.15550 1.20538 0.92517 0.96857 0.94797 1.18756 0.93058 0.91368 1.26654 1.18896 0.94867 0.93776 0.92213 1.21041 0.94787 0.95766 0.98665 1.21261 0.95451 0.96150 0.96075 1.98349 1.49720 1.97202 1.58389 1.17664 0.94794 0.86111 0.95329 1.84829 1.41587 1.32419 1.70638 1.21097 0.98407 0.97654 1.01235 1.17711 0.89324 0.94824 0.89886 1.91504 1.58930 1.95585 1.64670 1.22705 0.98523 0.87431 0.91862 1.68809 1.07092 1.25950 1.18052 0.91090 0.87986 0.88607 0.83764 0.75641 0.83981 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.56 11.44 55.55 0.64 -16.92 16 2 C 0.06 1.51 5.50 -17.33 -0.10 1.42 16 3 Si 0.91 17.42 29.56 -169.99 -5.02 12.39 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.41 -10.26 9.11 -37.89 -0.35 -10.61 16 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.25 6.61 6.55 -84.98 -0.56 6.06 16 10 C -0.27 -6.40 9.76 -39.15 -0.38 -6.78 16 11 C -0.02 -0.53 8.94 -39.37 -0.35 -0.88 16 12 C -0.29 -6.26 5.34 -104.46 -0.56 -6.82 16 13 C 0.00 0.08 5.50 -104.78 -0.58 -0.49 16 14 C -0.08 -1.33 9.29 -39.18 -0.36 -1.70 16 15 C -0.06 -0.89 6.33 -39.40 -0.25 -1.14 16 16 Cl -0.07 -0.85 28.49 -51.86 -1.48 -2.33 16 17 C 0.11 1.45 6.71 -39.01 -0.26 1.19 16 18 O -0.49 -5.52 12.94 -19.15 -0.25 -5.77 16 19 C -0.16 -2.30 9.95 -39.43 -0.39 -2.69 16 20 C 0.10 1.72 7.18 -39.01 -0.28 1.44 16 21 F -0.13 -2.33 15.96 2.25 0.04 -2.29 16 22 C 0.16 3.79 10.69 -17.10 -0.18 3.60 16 23 N -0.49 -12.81 7.83 -10.83 -0.08 -12.90 16 24 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 25 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 26 H 0.10 1.92 7.87 -52.49 -0.41 1.50 16 27 H 0.14 2.24 8.05 -52.49 -0.42 1.81 16 28 H 0.39 2.61 9.06 45.56 0.41 3.02 16 29 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.12 2.50 8.04 -52.49 -0.42 2.08 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -27.99 293.66 -7.57 -35.56 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -1.24 Total: 5.24 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -4.60 Total: -17.41 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.55 Total: -29.82 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.25 Total: -5.77 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.02 Total: 12.39 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.99 -7.57 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245672607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.584 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds