Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27352 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27553 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27511 * 3 2 1 7 7 C 1.40065 * 119.99823 * 180.27460 * 2 1 3 8 8 H 1.07999 * 119.99981 * 179.72751 * 7 2 1 9 9 C 1.40906 * 119.99662 * 359.72516 * 7 2 1 10 10 C 1.40923 * 119.66944 * 179.72967 * 9 7 2 11 11 C 1.36611 * 119.26603 * 179.70196 * 10 9 7 12 12 C 1.40372 * 118.59879 * 0.55788 * 11 10 9 13 13 C 1.47786 * 120.34920 * 179.74223 * 12 11 10 14 14 C 1.39756 * 120.09640 * 129.98216 * 13 12 11 15 15 C 1.37787 * 119.91908 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 119.93727 * 180.02562 * 15 14 13 17 17 C 1.39171 * 120.12927 * 359.97334 * 15 14 13 18 18 O 1.35810 * 119.89945 * 180.02562 * 17 15 14 19 19 C 1.38843 * 120.19897 * 0.04580 * 17 15 14 20 20 C 1.38051 * 120.08162 * 359.70072 * 19 17 15 21 21 F 1.35099 * 120.06640 * 180.29627 * 20 19 17 22 22 C 1.40186 * 119.29533 * 359.72684 * 12 11 10 23 23 N 1.31167 * 120.67564 * 359.97151 * 22 12 11 24 24 H 0.97000 * 120.00069 * 359.72763 * 1 2 3 25 25 H 1.08004 * 120.37005 * 359.97438 * 10 9 7 26 26 H 1.07993 * 120.69562 * 180.28146 * 11 10 9 27 27 H 1.07999 * 120.04570 * 359.97438 * 14 13 12 28 28 H 0.96698 * 114.00136 * 90.00005 * 18 17 15 29 29 H 1.08002 * 119.95813 * 179.97438 * 19 17 15 30 30 H 1.07999 * 119.66472 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4831 2.0497 -1.4001 5 1 1.4418 2.6509 0.7058 6 1 3.5419 1.4384 0.6942 7 6 2.0077 -1.2130 -0.0058 8 1 3.0877 -1.2130 -0.0103 9 6 1.3030 -2.4332 -0.0058 10 6 2.0145 -3.6496 -0.0175 11 6 1.3231 -4.8278 -0.0112 12 6 -0.0799 -4.7836 -0.0052 13 6 -0.8664 -6.0347 -0.0040 14 6 -1.8933 -6.2161 0.9265 15 6 -2.6247 -7.3838 0.9239 16 17 -3.9007 -7.6093 2.0791 17 6 -2.3431 -8.3824 -0.0036 18 8 -3.0673 -9.5313 -0.0022 19 6 -1.3239 -8.2078 -0.9301 20 6 -0.5892 -7.0391 -0.9385 21 9 0.3986 -6.8670 -1.8440 22 6 -0.7269 -3.5400 -0.0001 23 7 -0.0350 -2.4256 -0.0002 24 1 -0.4850 0.8400 0.0040 25 1 3.0945 -3.6504 -0.0268 26 1 1.8450 -5.7733 -0.0153 27 1 -2.1133 -5.4420 1.6467 28 1 -3.8523 -9.5022 -0.5661 29 1 -1.1084 -8.9855 -1.6479 30 1 -1.8061 -3.4989 0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245672607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = -58.358239 kcal Electronic energy + Delta-G solvation = -19778.078938 eV Core-core repulsion = 16284.830471 eV Total energy + Delta-G solvation = -3493.248466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.90110 -40.83115 -39.95448 -37.72125 -37.41302 -35.60678 -33.08471 -32.49852 -31.53300 -30.01730 -27.24167 -24.53784 -24.02857 -23.29070 -22.26501 -19.77777 -19.50544 -17.95676 -17.83298 -17.51624 -17.33993 -16.70663 -16.09008 -15.91838 -15.87223 -15.12241 -14.95507 -14.59387 -14.34660 -14.13249 -13.83993 -13.77681 -13.01953 -12.85970 -12.78660 -12.68269 -12.38529 -12.23878 -12.10415 -11.80383 -11.66147 -11.27434 -10.37889 -10.10669 -9.77209 -9.58382 -9.09403 -8.38381 -6.57605 -0.24326 -0.03209 0.81959 1.04542 1.15392 1.40808 1.51541 1.55699 2.19493 2.28274 2.76682 2.88675 3.39734 3.64513 3.78724 3.87249 4.13766 4.16605 4.31116 4.55657 4.61277 4.80997 4.83823 4.87826 4.98134 5.12121 5.14727 5.42887 5.50868 5.65908 5.81097 6.04961 6.18543 6.61819 6.70909 6.86356 8.08853 8.34034 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.003801 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.347625 B = 7365.209744 C = 8126.793039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.447 4.447 8 H 0.095 0.905 9 C 0.223 3.777 10 C -0.287 4.287 11 C -0.029 4.029 12 C -0.275 4.275 13 C -0.027 4.027 14 C -0.077 4.077 15 C -0.068 4.068 16 Cl -0.049 7.049 17 C 0.135 3.865 18 O -0.485 6.485 19 C -0.155 4.155 20 C 0.096 3.904 21 F -0.140 7.140 22 C 0.143 3.857 23 N -0.520 5.520 24 H 0.284 0.716 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.143 0.857 28 H 0.414 0.586 29 H 0.171 0.829 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -11.681 -0.360 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.202 4.202 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.477 4.477 8 H 0.113 0.887 9 C 0.099 3.901 10 C -0.309 4.309 11 C -0.053 4.053 12 C -0.280 4.280 13 C -0.029 4.029 14 C -0.096 4.096 15 C -0.095 4.095 16 Cl -0.020 7.020 17 C 0.089 3.911 18 O -0.298 6.298 19 C -0.174 4.174 20 C 0.077 3.923 21 F -0.118 7.118 22 C -0.024 4.024 23 N -0.233 5.233 24 H 0.094 0.906 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.275 0.725 29 H 0.188 0.812 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.308 -10.915 0.093 12.608 hybrid contribution 0.514 0.085 -0.385 0.648 sum -5.794 -10.830 -0.291 12.286 Atomic orbital electron populations 1.70209 1.09039 1.29691 1.27358 1.27095 0.95779 1.04795 0.92495 0.85073 0.79043 0.75265 0.79584 1.18642 1.19057 1.17695 1.20116 0.95266 0.90492 1.41827 0.88724 1.19079 0.88959 0.93263 0.88756 1.21568 0.99648 0.93464 1.16257 1.20819 0.93090 0.97118 0.94258 1.19001 0.93228 0.92413 1.23389 1.18726 0.96358 0.93244 0.94568 1.20974 0.94066 0.96476 0.98084 1.21304 0.95689 0.95818 0.96685 1.98361 1.48790 1.97069 1.57823 1.17670 0.93998 0.85785 0.93683 1.84774 1.42681 1.30906 1.71434 1.21293 0.97462 0.97083 1.01558 1.17852 0.89450 0.95459 0.89564 1.91479 1.59538 1.95747 1.65066 1.23043 0.99309 0.87718 0.92352 1.68745 1.07603 1.27669 1.19244 0.90553 0.86942 0.86609 0.83895 0.72531 0.81155 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.80 11.44 21.84 0.25 -38.55 16 2 C 0.02 1.07 5.50 85.30 0.47 1.54 16 3 Si 0.99 36.45 29.56 68.60 2.03 38.48 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 7 C -0.45 -23.58 9.11 23.37 0.21 -23.37 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 9 C 0.22 12.16 6.55 40.15 0.26 12.42 16 10 C -0.29 -14.03 9.76 22.55 0.22 -13.81 16 11 C -0.03 -1.31 8.94 22.41 0.20 -1.11 16 12 C -0.27 -11.87 5.34 -19.76 -0.11 -11.98 16 13 C -0.03 -0.94 5.50 -19.97 -0.11 -1.05 16 14 C -0.08 -2.34 9.29 22.53 0.21 -2.14 16 15 C -0.07 -1.75 6.33 22.39 0.14 -1.61 16 16 Cl -0.05 -1.14 28.49 -2.72 -0.08 -1.22 16 17 C 0.14 3.12 6.71 22.64 0.15 3.27 16 18 O -0.48 -8.69 12.94 -91.42 -1.18 -9.88 16 19 C -0.15 -3.77 9.95 22.37 0.22 -3.55 16 20 C 0.10 3.06 7.18 22.64 0.16 3.22 16 21 F -0.14 -4.89 15.96 44.97 0.72 -4.17 16 22 C 0.14 6.80 10.69 85.27 0.91 7.71 16 23 N -0.52 -28.55 7.83 -188.18 -1.47 -30.03 16 24 H 0.28 13.28 8.29 -92.71 -0.77 12.51 16 25 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 26 H 0.12 4.59 7.87 -2.91 -0.02 4.56 16 27 H 0.14 4.33 8.05 -2.91 -0.02 4.30 16 28 H 0.41 3.41 9.06 -74.06 -0.67 2.74 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.14 5.80 8.04 -2.91 -0.02 5.78 16 Total: -1.00 -62.37 293.66 3.75 -58.62 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.54 Total: 17.19 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 2.95 Total: -30.45 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.22 Total: -68.58 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.18 Total: -9.88 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.72 Total: -4.17 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -62.37 3.75 -58.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245672607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.259 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds