Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47363 * 275.22540 * 3 2 1 5 5 H 1.48504 * 109.46896 * 35.22952 * 3 2 1 6 6 H 1.48504 * 109.46921 * 155.22253 * 3 2 1 7 7 C 1.40053 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00376 * 340.14211 * 7 2 1 9 9 C 1.40865 * 119.99777 * 160.13594 * 7 2 1 10 10 C 1.41108 * 120.72319 * 332.22856 * 9 7 2 11 11 C 1.36885 * 118.40188 * 180.02562 * 10 9 7 12 12 C 1.38880 * 119.80780 * 359.97438 * 11 10 9 13 13 N 1.31739 * 121.50837 * 0.27859 * 12 11 10 14 14 C 1.32621 * 121.71541 * 359.43100 * 13 12 11 15 15 C 1.47703 * 119.99778 * 180.31030 * 14 13 12 16 16 C 1.39962 * 120.15191 * 123.48295 * 15 14 13 17 17 F 1.35100 * 120.04975 * 359.97438 * 16 15 14 18 18 C 1.38152 * 119.90184 * 180.02562 * 16 15 14 19 19 C 1.38320 * 120.21040 * 359.97438 * 18 16 15 20 20 C 1.38812 * 120.30572 * 0.02562 * 19 18 16 21 21 O 1.35975 * 119.95356 * 180.02562 * 20 19 18 22 22 C 1.38510 * 120.09197 * 359.75953 * 20 19 18 23 23 Cl 1.73599 * 120.10292 * 180.27933 * 22 20 19 24 24 H 0.97003 * 120.00438 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.80588 * 0.04181 * 10 9 7 26 26 H 1.07993 * 120.09770 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.24437 * 180.02562 * 12 11 10 28 28 H 1.08007 * 119.88980 * 180.02562 * 18 16 15 29 29 H 1.08005 * 119.84727 * 180.02562 * 19 18 16 30 30 H 0.96704 * 113.99906 * 89.99329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3789 2.1103 -1.3942 5 1 1.4987 2.6183 0.8077 6 1 3.5902 1.4109 0.5868 7 6 2.0081 -1.2129 -0.0005 8 1 1.5164 -2.1206 0.3168 9 6 3.3539 -1.2489 -0.4151 10 6 3.8486 -0.3057 -1.3407 11 6 5.1640 -0.3849 -1.7110 12 6 5.9735 -1.3780 -1.1750 13 7 5.5046 -2.2588 -0.3149 14 6 4.2418 -2.2343 0.0896 15 6 3.7579 -3.2365 1.0607 16 6 3.1750 -2.8245 2.2647 17 9 3.0540 -1.5078 2.5420 18 6 2.7247 -3.7662 3.1696 19 6 2.8474 -5.1152 2.8893 20 6 3.4240 -5.5335 1.6979 21 8 3.5406 -6.8614 1.4295 22 6 3.8758 -4.6000 0.7797 23 17 4.5904 -5.1228 -0.7135 24 1 -0.4851 0.8400 0.0004 25 1 3.2050 0.4605 -1.7471 26 1 5.5712 0.3227 -2.4179 27 1 7.0101 -1.4318 -1.4732 28 1 2.2745 -3.4481 4.0984 29 1 2.4929 -5.8464 3.6008 30 1 2.7803 -7.2369 0.9647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245825632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -40.920080 kcal Electronic energy + Delta-G solvation = -20994.809649 eV Core-core repulsion = 17502.317358 eV Total energy + Delta-G solvation = -3492.492291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.12223 -39.44729 -38.48242 -36.21087 -35.81770 -34.15706 -32.00292 -31.42490 -29.39656 -28.53168 -25.68268 -23.49959 -22.26565 -21.71303 -20.69183 -18.12674 -17.65903 -17.13708 -16.47987 -16.10489 -15.59137 -14.94230 -14.70895 -14.45088 -14.23721 -13.67170 -13.39557 -13.21422 -13.01990 -12.40728 -12.36850 -12.17636 -11.95327 -11.50109 -11.41805 -10.93635 -10.78274 -10.67721 -10.45581 -10.18132 -10.02636 -9.59844 -8.78737 -8.45289 -8.18572 -8.08070 -7.65257 -7.24121 -4.73275 1.30276 1.35291 2.31011 2.59627 2.62955 2.94365 3.05502 3.17101 3.70054 3.77894 4.29723 4.39324 4.74343 5.05692 5.08866 5.31678 5.49594 5.74364 5.93129 6.01361 6.05427 6.22224 6.30093 6.37330 6.47379 6.55471 6.74465 6.92537 7.08617 7.32750 7.42856 7.66537 7.74955 8.02300 8.28639 8.45928 9.30281 9.75032 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.007857 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.068624 B = 3562.773919 C = 4488.634985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.410 4.410 8 H 0.095 0.905 9 C 0.069 3.931 10 C -0.206 4.206 11 C -0.114 4.114 12 C -0.042 4.042 13 N -0.422 5.422 14 C 0.015 3.985 15 C 0.011 3.989 16 C 0.130 3.870 17 F -0.115 7.115 18 C -0.145 4.145 19 C -0.121 4.121 20 C 0.090 3.910 21 O -0.487 6.487 22 C -0.025 4.025 23 Cl -0.043 7.043 24 H 0.291 0.709 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -5.217 2.833 6.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.437 4.437 8 H 0.113 0.887 9 C 0.064 3.936 10 C -0.231 4.231 11 C -0.134 4.134 12 C -0.201 4.201 13 N -0.129 5.129 14 C -0.125 4.125 15 C 0.008 3.992 16 C 0.109 3.891 17 F -0.094 7.094 18 C -0.164 4.164 19 C -0.140 4.140 20 C 0.045 3.955 21 O -0.297 6.297 22 C -0.054 4.054 23 Cl -0.014 7.014 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.598 -5.692 3.312 7.079 hybrid contribution -0.856 1.599 -0.820 1.991 sum 1.742 -4.092 2.492 5.098 Atomic orbital electron populations 1.69659 1.08245 1.31002 1.31371 1.26236 0.94726 1.02022 0.90516 0.86339 0.81717 0.79442 0.79040 1.19304 1.21113 1.16478 1.19418 0.93241 0.96388 1.34644 0.88708 1.18289 0.93387 0.91287 0.90658 1.21091 0.96136 1.03425 1.02490 1.21379 0.94675 0.98268 0.99052 1.21649 0.99045 0.96825 1.02616 1.67042 1.14300 1.22343 1.09183 1.18860 0.89986 1.00562 1.03087 1.18186 0.97428 0.90779 0.92819 1.17586 0.99614 0.78694 0.93217 1.91550 1.93259 1.31451 1.93096 1.20922 1.02999 0.92147 1.00349 1.20995 1.00586 0.95408 0.97013 1.17970 1.01240 0.83060 0.93278 1.84861 1.46107 1.19021 1.79692 1.21246 1.02026 0.92397 0.89711 1.98344 1.81748 1.90095 1.31234 0.89827 0.87176 0.87698 0.85502 0.84248 0.84324 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 13.93 55.55 0.77 -18.53 16 2 C 0.09 2.16 5.41 -17.32 -0.09 2.07 16 3 Si 0.91 19.81 24.53 -169.99 -4.17 15.64 16 4 H -0.27 -5.56 6.65 56.52 0.38 -5.19 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.24 -5.54 6.90 56.52 0.39 -5.15 16 7 C -0.41 -10.43 7.17 -37.91 -0.27 -10.71 16 8 H 0.10 2.54 7.13 -52.48 -0.37 2.17 16 9 C 0.07 1.72 4.93 -106.41 -0.52 1.19 16 10 C -0.21 -4.82 7.30 -38.98 -0.28 -5.10 16 11 C -0.11 -2.40 10.03 -39.83 -0.40 -2.80 16 12 C -0.04 -0.90 11.16 -17.35 -0.19 -1.09 16 13 N -0.42 -9.90 9.42 -9.18 -0.09 -9.99 16 14 C 0.01 0.36 5.42 -82.25 -0.45 -0.09 16 15 C 0.01 0.23 4.85 -104.83 -0.51 -0.28 16 16 C 0.13 2.64 6.22 -38.97 -0.24 2.39 16 17 F -0.12 -2.56 15.22 2.25 0.03 -2.53 16 18 C -0.15 -2.34 10.00 -39.58 -0.40 -2.73 16 19 C -0.12 -1.76 9.98 -39.34 -0.39 -2.16 16 20 C 0.09 1.47 6.69 -39.27 -0.26 1.21 16 21 O -0.49 -6.76 12.95 -19.66 -0.25 -7.02 16 22 C -0.03 -0.50 6.36 -38.93 -0.25 -0.74 16 23 Cl -0.04 -0.83 26.91 -51.86 -1.40 -2.23 16 24 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 25 H 0.11 2.50 4.66 -52.49 -0.24 2.26 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.39 3.61 9.06 45.56 0.41 4.02 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -28.47 280.51 -6.20 -34.67 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -1.07 Total: 4.59 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.26 Total: -18.84 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 0.69 Total: -28.52 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.25 Total: -7.02 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.03 Total: -2.53 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.17 Total: 15.64 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.40 Total: -2.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.47 -6.20 -34.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245825632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.249 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds