Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30782 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47363 * 275.22540 * 3 2 1 5 5 H 1.48504 * 109.46896 * 35.22952 * 3 2 1 6 6 H 1.48504 * 109.46921 * 155.22253 * 3 2 1 7 7 C 1.40053 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00376 * 340.14211 * 7 2 1 9 9 C 1.40865 * 119.99777 * 160.13594 * 7 2 1 10 10 C 1.41108 * 120.72319 * 332.22856 * 9 7 2 11 11 C 1.36885 * 118.40188 * 180.02562 * 10 9 7 12 12 C 1.38880 * 119.80780 * 359.97438 * 11 10 9 13 13 N 1.31739 * 121.50837 * 0.27859 * 12 11 10 14 14 C 1.32621 * 121.71541 * 359.43100 * 13 12 11 15 15 C 1.47703 * 119.99778 * 180.31030 * 14 13 12 16 16 C 1.39962 * 120.15191 * 123.48295 * 15 14 13 17 17 F 1.35100 * 120.04975 * 359.97438 * 16 15 14 18 18 C 1.38152 * 119.90184 * 180.02562 * 16 15 14 19 19 C 1.38320 * 120.21040 * 359.97438 * 18 16 15 20 20 C 1.38812 * 120.30572 * 0.02562 * 19 18 16 21 21 O 1.35975 * 119.95356 * 180.02562 * 20 19 18 22 22 C 1.38510 * 120.09197 * 359.75953 * 20 19 18 23 23 Cl 1.73599 * 120.10292 * 180.27933 * 22 20 19 24 24 H 0.97003 * 120.00438 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.80588 * 0.04181 * 10 9 7 26 26 H 1.07993 * 120.09770 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.24437 * 180.02562 * 12 11 10 28 28 H 1.08007 * 119.88980 * 180.02562 * 18 16 15 29 29 H 1.08005 * 119.84727 * 180.02562 * 19 18 16 30 30 H 0.96704 * 113.99906 * 89.99329 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3789 2.1103 -1.3942 5 1 1.4987 2.6183 0.8077 6 1 3.5902 1.4109 0.5868 7 6 2.0081 -1.2129 -0.0005 8 1 1.5164 -2.1206 0.3168 9 6 3.3539 -1.2489 -0.4151 10 6 3.8486 -0.3057 -1.3407 11 6 5.1640 -0.3849 -1.7110 12 6 5.9735 -1.3780 -1.1750 13 7 5.5046 -2.2588 -0.3149 14 6 4.2418 -2.2343 0.0896 15 6 3.7579 -3.2365 1.0607 16 6 3.1750 -2.8245 2.2647 17 9 3.0540 -1.5078 2.5420 18 6 2.7247 -3.7662 3.1696 19 6 2.8474 -5.1152 2.8893 20 6 3.4240 -5.5335 1.6979 21 8 3.5406 -6.8614 1.4295 22 6 3.8758 -4.6000 0.7797 23 17 4.5904 -5.1228 -0.7135 24 1 -0.4851 0.8400 0.0004 25 1 3.2050 0.4605 -1.7471 26 1 5.5712 0.3227 -2.4179 27 1 7.0101 -1.4318 -1.4732 28 1 2.2745 -3.4481 4.0984 29 1 2.4929 -5.8464 3.6008 30 1 2.7803 -7.2369 0.9647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245825632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -59.813801 kcal Electronic energy + Delta-G solvation = -20995.628942 eV Core-core repulsion = 17502.317358 eV Total energy + Delta-G solvation = -3493.311584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.69715 -40.90861 -40.05300 -37.50958 -37.24048 -35.95989 -33.54656 -33.21332 -30.88832 -29.96311 -27.44981 -25.04247 -23.75809 -23.34068 -22.26937 -19.49853 -19.42681 -18.59051 -17.93476 -17.72856 -17.15680 -16.59286 -16.15264 -16.02255 -15.67569 -15.33574 -14.95228 -14.75374 -14.50319 -14.05771 -13.94792 -13.86180 -13.40965 -13.27545 -12.85194 -12.66812 -12.17689 -12.15991 -12.02856 -11.85343 -11.51096 -11.38044 -10.41366 -10.15366 -9.91175 -9.51460 -9.25642 -9.05085 -6.58444 -0.12836 -0.01233 0.61453 0.82375 1.18227 1.19175 1.33230 1.41571 2.02806 2.34689 2.56778 3.08048 3.34549 3.45504 3.61910 3.91747 4.14283 4.26309 4.34182 4.43978 4.58903 4.66706 4.85178 4.97670 5.02058 5.06519 5.10481 5.28847 5.56892 5.59778 5.73650 5.88790 6.15856 6.50044 6.61614 6.74362 7.54491 7.99974 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.007857 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.068624 B = 3562.773919 C = 4488.634985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.060 3.940 3 Si 0.952 3.048 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.431 4.431 8 H 0.066 0.934 9 C 0.050 3.950 10 C -0.224 4.224 11 C -0.113 4.113 12 C -0.040 4.040 13 N -0.442 5.442 14 C 0.009 3.991 15 C -0.026 4.026 16 C 0.097 3.903 17 F -0.137 7.137 18 C -0.132 4.132 19 C -0.100 4.100 20 C 0.103 3.897 21 O -0.486 6.486 22 C -0.045 4.045 23 Cl -0.051 7.051 24 H 0.300 0.700 25 H 0.114 0.886 26 H 0.146 0.854 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -5.986 3.398 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.159 4.159 3 Si 0.775 3.225 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.459 4.459 8 H 0.084 0.916 9 C 0.045 3.955 10 C -0.249 4.249 11 C -0.132 4.132 12 C -0.199 4.199 13 N -0.149 5.149 14 C -0.130 4.130 15 C -0.028 4.028 16 C 0.076 3.924 17 F -0.115 7.115 18 C -0.151 4.151 19 C -0.119 4.119 20 C 0.057 3.943 21 O -0.299 6.299 22 C -0.074 4.074 23 Cl -0.022 7.022 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.164 0.836 27 H 0.178 0.822 28 H 0.189 0.811 29 H 0.204 0.796 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.329 -6.479 3.862 8.245 hybrid contribution -0.944 1.617 -0.979 2.113 sum 2.385 -4.862 2.883 6.135 Atomic orbital electron populations 1.69661 1.08938 1.32083 1.33193 1.26724 0.95231 1.03794 0.90169 0.85699 0.79670 0.77210 0.79897 1.17445 1.19652 1.18723 1.19206 0.93861 0.95879 1.36969 0.91637 1.18533 0.93454 0.92347 0.91204 1.21312 0.97455 1.03527 1.02637 1.21774 0.93690 0.98647 0.99100 1.22359 1.00585 0.95807 1.01167 1.67151 1.14198 1.23354 1.10198 1.19254 0.89997 1.00732 1.03012 1.18339 0.99562 0.91487 0.93457 1.18015 1.01415 0.78641 0.94303 1.91483 1.93682 1.33090 1.93270 1.21327 1.01337 0.92063 1.00387 1.21488 0.98220 0.95502 0.96654 1.18088 0.99697 0.83563 0.92959 1.84807 1.47706 1.17376 1.79983 1.21479 1.03196 0.92360 0.90334 1.98326 1.82021 1.89938 1.31906 0.88907 0.86825 0.83648 0.82224 0.81058 0.79602 0.73137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.46 13.93 21.85 0.30 -41.15 16 2 C 0.06 3.05 5.41 85.29 0.46 3.51 16 3 Si 0.95 40.99 24.53 68.60 1.68 42.67 16 4 H -0.25 -9.90 6.65 99.48 0.66 -9.24 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -12.11 6.90 99.48 0.69 -11.43 16 7 C -0.43 -22.92 7.17 23.35 0.17 -22.75 16 8 H 0.07 3.75 7.13 -2.91 -0.02 3.73 16 9 C 0.05 2.53 4.93 -21.02 -0.10 2.42 16 10 C -0.22 -10.43 7.30 22.66 0.17 -10.26 16 11 C -0.11 -4.56 10.03 22.11 0.22 -4.34 16 12 C -0.04 -1.64 11.16 84.86 0.95 -0.70 16 13 N -0.44 -20.67 9.42 -182.96 -1.72 -22.39 16 14 C 0.01 0.46 5.42 42.44 0.23 0.69 16 15 C -0.03 -1.15 4.85 -20.00 -0.10 -1.24 16 16 C 0.10 3.98 6.22 22.67 0.14 4.12 16 17 F -0.14 -6.31 15.22 44.97 0.68 -5.63 16 18 C -0.13 -4.01 10.00 22.27 0.22 -3.79 16 19 C -0.10 -2.57 9.98 22.43 0.22 -2.34 16 20 C 0.10 3.13 6.69 22.47 0.15 3.28 16 21 O -0.49 -11.97 12.95 -93.27 -1.21 -13.17 16 22 C -0.05 -1.76 6.36 22.69 0.14 -1.61 16 23 Cl -0.05 -1.94 26.91 -2.72 -0.07 -2.01 16 24 H 0.30 13.60 8.30 -92.71 -0.77 12.83 16 25 H 0.11 5.11 4.66 -2.91 -0.01 5.09 16 26 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 27 H 0.16 5.44 8.06 -2.91 -0.02 5.42 16 28 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.41 6.29 9.06 -74.05 -0.67 5.62 16 Total: -1.00 -64.26 280.51 3.03 -61.23 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.49 Total: 13.46 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 2.87 Total: -33.01 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.42 Total: -63.54 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -1.21 Total: -13.17 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.68 Total: -5.63 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.68 Total: 42.67 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.07 Total: -2.01 kcal Total: -64.26 3.03 -61.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245825632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.420 kcal (2) G-P(sol) polarization free energy of solvation -64.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds