Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48492 * 109.47268 * 265.16413 * 3 2 1 5 5 H 1.48498 * 109.47186 * 25.16695 * 3 2 1 6 6 H 1.48497 * 109.46790 * 145.16561 * 3 2 1 7 7 C 1.40010 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00386 * 345.16762 * 7 2 1 9 9 C 1.41369 * 119.99998 * 165.16885 * 7 2 1 10 10 C 1.40707 * 119.77061 * 164.52057 * 9 7 2 11 11 C 1.38265 * 119.19637 * 180.02562 * 10 9 7 12 12 C 1.38706 * 118.69396 * 359.97438 * 11 10 9 13 13 C 1.39901 * 119.46443 * 0.02562 * 12 11 10 14 14 C 1.48236 * 119.61388 * 179.97438 * 13 12 11 15 15 C 1.39642 * 120.12103 * 310.00400 * 14 13 12 16 16 F 1.35101 * 120.03259 * 359.95286 * 15 14 13 17 17 C 1.38217 * 119.93822 * 179.97438 * 15 14 13 18 18 C 1.38276 * 120.17914 * 359.97438 * 17 15 14 19 19 C 1.38742 * 120.24698 * 359.74836 * 18 17 15 20 20 O 1.35970 * 119.97225 * 180.27797 * 19 18 17 21 21 C 1.38599 * 120.05907 * 0.50965 * 19 18 17 22 22 Cl 1.73599 * 120.09116 * 179.76871 * 21 19 18 23 23 N 1.32273 * 120.77898 * 0.27583 * 13 12 11 24 24 H 0.97005 * 119.99975 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.39813 * 0.04628 * 10 9 7 26 26 H 1.08004 * 120.65151 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.26549 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.91541 * 180.02562 * 17 15 14 29 29 H 1.07996 * 119.88209 * 180.02562 * 18 17 15 30 30 H 0.96708 * 113.99939 * 270.23460 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.5912 1.9874 -1.3950 5 1 1.3916 2.6800 0.5954 6 1 3.4842 1.4718 0.7997 7 6 2.0075 -1.2125 -0.0005 8 1 1.4945 -2.1324 0.2385 9 6 3.3859 -1.2329 -0.3139 10 6 4.1563 -2.3686 -0.0036 11 6 5.5034 -2.3755 -0.3148 12 6 6.0515 -1.2573 -0.9258 13 6 5.2340 -0.1580 -1.2094 14 6 5.8164 1.0389 -1.8618 15 6 6.9807 1.6177 -1.3527 16 9 7.5786 1.0880 -0.2631 17 6 7.5208 2.7334 -1.9642 18 6 6.9115 3.2781 -3.0796 19 6 5.7577 2.7057 -3.5952 20 8 5.1663 3.2426 -4.6956 21 6 5.2045 1.5900 -2.9868 22 17 3.7574 0.8768 -3.6277 23 7 3.9488 -0.1717 -0.8970 24 1 -0.4850 0.8401 0.0004 25 1 3.7007 -3.2248 0.4718 26 1 6.1169 -3.2347 -0.0868 27 1 7.1010 -1.2353 -1.1797 28 1 8.4216 3.1805 -1.5704 29 1 7.3379 4.1497 -3.5539 30 1 4.5077 3.9220 -4.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245828221.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = -46.702675 kcal Electronic energy + Delta-G solvation = -20829.518119 eV Core-core repulsion = 17336.775076 eV Total energy + Delta-G solvation = -3492.743043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.72124 -39.74733 -38.52816 -36.51114 -35.99849 -33.78079 -32.16250 -31.16738 -29.62564 -28.90194 -25.84540 -23.74969 -22.66236 -21.52450 -20.84229 -18.34309 -17.70901 -17.51369 -16.78552 -15.94277 -15.59275 -15.07250 -14.87471 -14.61331 -14.51187 -13.93274 -13.78753 -13.21141 -12.94311 -12.68730 -12.40299 -12.29440 -11.85088 -11.62285 -11.15276 -10.95374 -10.84202 -10.71081 -10.46833 -10.23297 -10.10629 -9.39201 -8.93952 -8.50970 -8.43080 -7.92361 -7.75108 -6.96023 -4.71744 0.90139 0.97251 2.36265 2.43096 2.58941 3.30880 3.42028 3.50910 3.55622 4.02994 4.26801 4.33602 4.46410 4.64122 4.81452 5.09049 5.39923 5.47386 5.69720 5.78354 5.92643 5.96291 6.08480 6.20563 6.45020 6.48988 6.58616 6.82819 7.06373 7.24376 7.42881 7.50409 7.74738 8.08568 8.46682 8.54972 9.43025 9.97660 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.008443 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.952005 B = 3315.381510 C = 4159.782828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.091 3.909 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.327 1.327 6 H -0.272 1.272 7 C -0.412 4.412 8 H 0.097 0.903 9 C 0.247 3.753 10 C -0.245 4.245 11 C -0.050 4.050 12 C -0.278 4.278 13 C 0.188 3.812 14 C -0.034 4.034 15 C 0.116 3.884 16 F -0.124 7.124 17 C -0.142 4.142 18 C -0.111 4.111 19 C 0.096 3.904 20 O -0.485 6.485 21 C -0.015 4.015 22 Cl -0.016 7.016 23 N -0.537 5.537 24 H 0.288 0.712 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.615 7.350 -5.182 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.132 4.132 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.260 1.260 6 H -0.198 1.198 7 C -0.443 4.443 8 H 0.115 0.885 9 C 0.123 3.877 10 C -0.268 4.268 11 C -0.074 4.074 12 C -0.302 4.302 13 C 0.047 3.953 14 C -0.037 4.037 15 C 0.095 3.905 16 F -0.102 7.102 17 C -0.161 4.161 18 C -0.130 4.130 19 C 0.050 3.950 20 O -0.295 6.295 21 C -0.043 4.043 22 Cl 0.013 6.987 23 N -0.254 5.254 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 10.018 7.574 -5.666 13.778 hybrid contribution 0.414 0.012 0.619 0.745 sum 10.432 7.586 -5.047 13.851 Atomic orbital electron populations 1.69655 1.08661 1.31045 1.32580 1.26293 0.94715 1.03339 0.88862 0.85003 0.77225 0.76367 0.80839 1.17776 1.25980 1.19776 1.19456 0.90739 0.96141 1.37916 0.88522 1.18497 0.93460 0.87022 0.88683 1.21749 0.94104 1.01024 1.09916 1.20871 0.94885 0.96284 0.95332 1.21007 0.98949 0.96401 1.13854 1.18854 0.90584 0.90486 0.95359 1.18643 0.93822 0.96393 0.94797 1.17504 0.92548 0.94299 0.86146 1.91534 1.82069 1.85543 1.51049 1.20938 1.01942 0.96050 0.97169 1.21125 0.95599 1.00669 0.95573 1.18052 0.94298 0.93638 0.89033 1.84856 1.58420 1.58434 1.27753 1.21281 0.91612 0.96314 0.95100 1.98421 1.33309 1.82172 1.84782 1.67004 1.09809 1.29074 1.19511 0.90159 0.87228 0.87514 0.87892 0.83737 0.83732 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.28 13.92 55.55 0.77 -20.51 16 2 C 0.09 2.44 5.51 -17.35 -0.10 2.34 16 3 Si 0.97 23.78 25.38 -169.99 -4.31 19.47 16 4 H -0.25 -5.97 6.21 56.52 0.35 -5.61 16 5 H -0.33 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -7.05 6.92 56.52 0.39 -6.66 16 7 C -0.41 -11.14 9.66 -37.73 -0.36 -11.51 16 8 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.25 6.36 6.15 -85.01 -0.52 5.84 16 10 C -0.25 -5.65 9.83 -38.64 -0.38 -6.03 16 11 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 12 C -0.28 -5.92 8.90 -38.79 -0.35 -6.27 16 13 C 0.19 4.28 5.64 -82.95 -0.47 3.82 16 14 C -0.03 -0.67 5.59 -104.82 -0.59 -1.25 16 15 C 0.12 1.95 7.15 -39.07 -0.28 1.67 16 16 F -0.12 -2.17 15.86 2.25 0.04 -2.14 16 17 C -0.14 -1.81 10.01 -39.57 -0.40 -2.21 16 18 C -0.11 -1.33 9.97 -39.38 -0.39 -1.72 16 19 C 0.10 1.40 6.69 -39.26 -0.26 1.14 16 20 O -0.48 -6.14 12.96 -19.64 -0.25 -6.40 16 21 C -0.01 -0.27 6.34 -39.01 -0.25 -0.51 16 22 Cl -0.02 -0.33 25.72 -51.86 -1.33 -1.66 16 23 N -0.54 -13.43 4.13 -7.69 -0.03 -13.46 16 24 H 0.29 7.04 8.29 -40.82 -0.34 6.71 16 25 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 27 H 0.10 1.98 7.76 -52.48 -0.41 1.57 16 28 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.39 3.31 9.06 45.56 0.41 3.72 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -30.04 285.22 -6.87 -36.91 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -1.30 Total: -0.37 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.74 Total: -16.14 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.74 Total: -33.97 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.25 Total: -6.40 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.31 Total: 19.47 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.33 Total: -1.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.04 -6.87 -36.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245828221.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.793 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds