Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48492 * 109.47268 * 265.16413 * 3 2 1 5 5 H 1.48498 * 109.47186 * 25.16695 * 3 2 1 6 6 H 1.48497 * 109.46790 * 145.16561 * 3 2 1 7 7 C 1.40010 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00386 * 345.16762 * 7 2 1 9 9 C 1.41369 * 119.99998 * 165.16885 * 7 2 1 10 10 C 1.40707 * 119.77061 * 164.52057 * 9 7 2 11 11 C 1.38265 * 119.19637 * 180.02562 * 10 9 7 12 12 C 1.38706 * 118.69396 * 359.97438 * 11 10 9 13 13 C 1.39901 * 119.46443 * 0.02562 * 12 11 10 14 14 C 1.48236 * 119.61388 * 179.97438 * 13 12 11 15 15 C 1.39642 * 120.12103 * 310.00400 * 14 13 12 16 16 F 1.35101 * 120.03259 * 359.95286 * 15 14 13 17 17 C 1.38217 * 119.93822 * 179.97438 * 15 14 13 18 18 C 1.38276 * 120.17914 * 359.97438 * 17 15 14 19 19 C 1.38742 * 120.24698 * 359.74836 * 18 17 15 20 20 O 1.35970 * 119.97225 * 180.27797 * 19 18 17 21 21 C 1.38599 * 120.05907 * 0.50965 * 19 18 17 22 22 Cl 1.73599 * 120.09116 * 179.76871 * 21 19 18 23 23 N 1.32273 * 120.77898 * 0.27583 * 13 12 11 24 24 H 0.97005 * 119.99975 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.39813 * 0.04628 * 10 9 7 26 26 H 1.08004 * 120.65151 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.26549 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.91541 * 180.02562 * 17 15 14 29 29 H 1.07996 * 119.88209 * 180.02562 * 18 17 15 30 30 H 0.96708 * 113.99939 * 270.23460 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.5912 1.9874 -1.3950 5 1 1.3916 2.6800 0.5954 6 1 3.4842 1.4718 0.7997 7 6 2.0075 -1.2125 -0.0005 8 1 1.4945 -2.1324 0.2385 9 6 3.3859 -1.2329 -0.3139 10 6 4.1563 -2.3686 -0.0036 11 6 5.5034 -2.3755 -0.3148 12 6 6.0515 -1.2573 -0.9258 13 6 5.2340 -0.1580 -1.2094 14 6 5.8164 1.0389 -1.8618 15 6 6.9807 1.6177 -1.3527 16 9 7.5786 1.0880 -0.2631 17 6 7.5208 2.7334 -1.9642 18 6 6.9115 3.2781 -3.0796 19 6 5.7577 2.7057 -3.5952 20 8 5.1663 3.2426 -4.6956 21 6 5.2045 1.5900 -2.9868 22 17 3.7574 0.8768 -3.6277 23 7 3.9488 -0.1717 -0.8970 24 1 -0.4850 0.8401 0.0004 25 1 3.7007 -3.2248 0.4718 26 1 6.1169 -3.2347 -0.0868 27 1 7.1010 -1.2353 -1.1797 28 1 8.4216 3.1805 -1.5704 29 1 7.3379 4.1497 -3.5539 30 1 4.5077 3.9220 -4.4962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245828221.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -66.003939 kcal Electronic energy + Delta-G solvation = -20830.355084 eV Core-core repulsion = 17336.775076 eV Total energy + Delta-G solvation = -3493.580009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.99456 -41.03067 -40.14090 -37.66370 -37.35326 -35.67761 -33.65877 -32.99134 -31.01269 -30.21904 -27.67850 -25.17923 -23.91444 -23.20788 -22.37363 -19.77458 -19.31004 -18.76874 -18.04374 -17.52691 -16.91969 -16.63486 -16.51060 -16.13898 -15.89241 -15.43745 -14.94829 -14.70137 -14.64878 -14.36473 -13.88573 -13.83890 -13.39326 -13.09430 -12.79968 -12.65308 -12.34856 -12.28583 -12.11010 -11.95962 -11.60611 -11.24268 -10.51796 -10.21186 -9.76460 -9.64047 -9.39992 -8.94128 -6.71301 -0.34554 -0.17935 0.63227 0.81480 1.10289 1.40522 1.54626 1.57944 2.18407 2.38569 2.55446 2.94201 3.13177 3.29717 3.55252 3.76704 3.98409 4.22192 4.25059 4.48430 4.57740 4.62149 4.70462 4.84226 4.92103 4.96610 5.08164 5.24344 5.44101 5.52886 5.65547 5.92442 6.06500 6.54820 6.59758 6.65053 7.58054 8.05073 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.008443 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.952005 B = 3315.381510 C = 4159.782828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.065 3.935 3 Si 1.019 2.981 4 H -0.244 1.244 5 H -0.320 1.320 6 H -0.296 1.296 7 C -0.451 4.451 8 H 0.075 0.925 9 C 0.232 3.768 10 C -0.263 4.263 11 C -0.043 4.043 12 C -0.269 4.269 13 C 0.172 3.828 14 C -0.073 4.073 15 C 0.099 3.901 16 F -0.133 7.133 17 C -0.118 4.118 18 C -0.086 4.086 19 C 0.104 3.896 20 O -0.488 6.488 21 C -0.040 4.040 22 Cl -0.049 7.049 23 N -0.550 5.550 24 H 0.295 0.705 25 H 0.119 0.881 26 H 0.149 0.851 27 H 0.129 0.871 28 H 0.188 0.812 29 H 0.194 0.806 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 9.508 -6.243 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.154 4.154 3 Si 0.851 3.149 4 H -0.169 1.169 5 H -0.252 1.252 6 H -0.224 1.224 7 C -0.483 4.483 8 H 0.093 0.907 9 C 0.107 3.893 10 C -0.285 4.285 11 C -0.066 4.066 12 C -0.292 4.292 13 C 0.032 3.968 14 C -0.075 4.075 15 C 0.079 3.921 16 F -0.112 7.112 17 C -0.136 4.136 18 C -0.104 4.104 19 C 0.058 3.942 20 O -0.301 6.301 21 C -0.068 4.068 22 Cl -0.020 7.020 23 N -0.268 5.268 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.167 0.833 27 H 0.147 0.853 28 H 0.206 0.794 29 H 0.211 0.789 30 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 13.639 9.747 -6.742 18.069 hybrid contribution -0.390 -0.640 0.849 1.132 sum 13.250 9.106 -5.893 17.123 Atomic orbital electron populations 1.69661 1.09175 1.31825 1.34944 1.26732 0.95152 1.04846 0.88696 0.84338 0.75241 0.74666 0.80621 1.16885 1.25220 1.22390 1.19419 0.91928 0.95727 1.41222 0.90704 1.18687 0.93418 0.88436 0.88733 1.21953 0.95244 1.00743 1.10556 1.21333 0.94213 0.97458 0.93637 1.21487 1.00123 0.95777 1.11814 1.19490 0.89963 0.92451 0.94913 1.18669 0.95819 0.96824 0.96202 1.17792 0.92199 0.95682 0.86452 1.91506 1.82070 1.85959 1.51639 1.21429 1.02357 0.93630 0.96182 1.21651 0.93498 1.00878 0.94356 1.18244 0.94818 0.92409 0.88719 1.84811 1.59088 1.59103 1.27054 1.21544 0.91223 0.98035 0.96039 1.98403 1.35401 1.82995 1.85176 1.66930 1.11353 1.28914 1.19558 0.89437 0.86263 0.83319 0.85345 0.79441 0.78889 0.72875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.42 13.92 21.83 0.30 -46.11 16 2 C 0.06 3.63 5.51 85.28 0.47 4.10 16 3 Si 1.02 50.52 25.38 68.60 1.74 52.26 16 4 H -0.24 -11.59 6.21 99.48 0.62 -10.97 16 5 H -0.32 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.30 -15.69 6.92 99.48 0.69 -15.00 16 7 C -0.45 -25.79 9.66 23.47 0.23 -25.56 16 8 H 0.07 4.42 8.06 -2.91 -0.02 4.40 16 9 C 0.23 12.35 6.15 40.26 0.25 12.60 16 10 C -0.26 -12.21 9.83 22.88 0.22 -11.99 16 11 C -0.04 -1.70 10.15 22.39 0.23 -1.47 16 12 C -0.27 -10.99 8.90 22.78 0.20 -10.79 16 13 C 0.17 7.73 5.64 42.14 0.24 7.96 16 14 C -0.07 -2.75 5.59 -19.99 -0.11 -2.86 16 15 C 0.10 3.03 7.15 22.60 0.16 3.19 16 16 F -0.13 -4.33 15.86 44.97 0.71 -3.62 16 17 C -0.12 -2.35 10.01 22.27 0.22 -2.13 16 18 C -0.09 -1.54 9.97 22.40 0.22 -1.32 16 19 C 0.10 2.67 6.69 22.48 0.15 2.82 16 20 O -0.49 -10.62 12.96 -93.21 -1.21 -11.83 16 21 C -0.04 -1.41 6.34 22.64 0.14 -1.26 16 22 Cl -0.05 -1.96 25.72 -2.72 -0.07 -2.03 16 23 N -0.55 -27.94 4.13 -178.23 -0.74 -28.67 16 24 H 0.30 14.99 8.29 -92.70 -0.77 14.22 16 25 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 26 H 0.15 4.63 8.06 -2.91 -0.02 4.60 16 27 H 0.13 4.55 7.76 -2.91 -0.02 4.53 16 28 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 30 H 0.41 5.51 9.06 -74.05 -0.67 4.84 16 Total: -1.00 -69.31 285.22 3.81 -65.50 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 0.43 Total: 1.20 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 2.63 Total: -26.70 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -0.43 Total: -74.79 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.21 Total: -11.83 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.71 Total: -3.62 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.74 Total: 52.26 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.03 kcal Total: -69.31 3.81 -65.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245828221.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.502 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds