Wall clock time and date at job start Tue Mar 31 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86804 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46938 * 300.00388 * 3 2 1 6 6 H 1.48502 * 109.46984 * 59.99851 * 3 2 1 7 7 C 1.40141 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.40775 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.33717 * 119.94134 * 0.28598 * 9 7 2 11 11 C 1.31276 * 121.63400 * 180.29004 * 10 9 7 12 12 C 1.39076 * 121.35254 * 359.68741 * 11 10 9 13 13 C 1.38359 * 119.73164 * 0.02562 * 12 11 10 14 14 C 1.39729 * 118.47300 * 0.02562 * 13 12 11 15 15 C 1.47726 * 120.65234 * 179.97438 * 14 13 12 16 16 C 1.39974 * 120.15260 * 89.99462 * 15 14 13 17 17 F 1.35099 * 120.05124 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.90472 * 179.97438 * 16 15 14 19 19 C 1.38348 * 120.20582 * 0.02562 * 18 16 15 20 20 C 1.38822 * 120.30420 * 359.97438 * 19 18 16 21 21 O 1.35971 * 119.95253 * 179.97438 * 20 19 18 22 22 C 1.38503 * 120.09617 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.10681 * 179.97438 * 22 20 19 24 24 H 0.96995 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.32133 * 179.70527 * 11 10 9 26 26 H 1.07999 * 120.13530 * 180.02562 * 12 11 10 27 27 H 1.07993 * 120.75855 * 179.97438 * 13 12 11 28 28 H 1.08005 * 119.90211 * 179.72427 * 18 16 15 29 29 H 1.08003 * 119.84516 * 179.97438 * 19 18 16 30 30 H 0.96704 * 113.99955 * 270.00421 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.7010 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0078 -1.2136 -0.0005 8 1 3.0879 -1.2136 -0.0010 9 6 1.3040 -2.4328 -0.0005 10 7 -0.0331 -2.4315 -0.0058 11 6 -0.7228 -3.5485 -0.0003 12 6 -0.0923 -4.7882 0.0048 13 6 1.2897 -4.8551 0.0046 14 6 2.0145 -3.6606 -0.0002 15 6 3.4917 -3.6759 0.0000 16 6 4.1948 -3.6882 -1.2102 17 9 3.5237 -3.6856 -2.3827 18 6 5.5761 -3.7020 -1.2040 19 6 6.2668 -3.7042 -0.0053 20 6 5.5782 -3.6921 1.2000 21 8 6.2642 -3.6949 2.3739 22 6 4.1932 -3.6782 1.2085 23 17 3.3318 -3.6637 2.7155 24 1 -0.4850 0.8400 0.0004 25 1 -1.8019 -3.5039 -0.0001 26 1 -0.6790 -5.6949 0.0088 27 1 1.7964 -5.8088 0.0089 28 1 6.1186 -3.7160 -2.1379 29 1 7.3468 -3.7155 -0.0073 30 1 6.4532 -4.5791 2.7169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245831046.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:57 Heat of formation + Delta-G solvation = -36.001034 kcal Electronic energy + Delta-G solvation = -20841.459652 eV Core-core repulsion = 17349.180667 eV Total energy + Delta-G solvation = -3492.278985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.31494 -39.45420 -38.10724 -36.27039 -35.84680 -33.70955 -32.16476 -30.32830 -29.28253 -28.38299 -25.75261 -23.27575 -22.28345 -21.49202 -20.59658 -18.01895 -17.52355 -17.26050 -16.52695 -15.85530 -15.28393 -15.00933 -14.55699 -14.36295 -14.18570 -13.87970 -13.50218 -12.97874 -12.71943 -12.23244 -12.13930 -11.91456 -11.57560 -11.24204 -11.20086 -11.01755 -10.86070 -10.70119 -10.48691 -10.21252 -9.96032 -9.45904 -8.43068 -8.25823 -8.15770 -7.63895 -7.57739 -6.49206 -4.61518 1.24975 1.36436 2.60071 2.61540 2.89053 3.06380 3.11763 3.18782 3.62680 3.90299 4.23602 4.63936 4.68532 5.02613 5.19925 5.45157 5.74749 5.83586 6.02380 6.03424 6.18394 6.24374 6.39221 6.46430 6.51447 6.79601 6.95320 7.03429 7.24847 7.47471 7.63054 7.68818 7.95089 8.15817 8.55702 8.84673 10.02005 10.21138 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.008210 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.620767 B = 3409.584804 C = 3997.524174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.081 0.919 9 C 0.283 3.717 10 N -0.480 5.480 11 C 0.137 3.863 12 C -0.321 4.321 13 C -0.020 4.020 14 C -0.248 4.248 15 C 0.020 3.980 16 C 0.106 3.894 17 F -0.126 7.126 18 C -0.142 4.142 19 C -0.125 4.125 20 C 0.094 3.906 21 O -0.486 6.486 22 C -0.030 4.030 23 Cl -0.041 7.041 24 H 0.275 0.725 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -6.108 1.021 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.156 4.156 3 Si 0.725 3.275 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.443 4.443 8 H 0.099 0.901 9 C 0.160 3.840 10 N -0.191 5.191 11 C -0.032 4.032 12 C -0.344 4.344 13 C -0.045 4.045 14 C -0.253 4.253 15 C 0.017 3.983 16 C 0.086 3.914 17 F -0.105 7.105 18 C -0.161 4.161 19 C -0.144 4.144 20 C 0.049 3.951 21 O -0.295 6.295 22 C -0.058 4.058 23 Cl -0.012 7.012 24 H 0.086 0.914 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.600 -4.488 1.052 9.758 hybrid contribution 0.617 -0.637 -0.007 0.887 sum 9.217 -5.125 1.045 10.598 Atomic orbital electron populations 1.70111 1.07217 1.28000 1.27310 1.26095 0.94892 1.01193 0.93428 0.86343 0.81199 0.81158 0.78793 1.18124 1.19572 1.19521 1.19550 0.94243 0.89441 1.41094 0.90056 1.18389 0.87832 0.90329 0.87468 1.68777 1.06855 1.26478 1.16992 1.22615 0.98832 0.88843 0.92944 1.21151 0.94338 0.97891 1.21031 1.20719 0.93806 0.95157 0.94789 1.18910 0.88622 0.95162 1.22651 1.18546 0.94720 0.95957 0.89032 1.17802 0.89268 1.02967 0.81371 1.91505 1.80779 1.93554 1.44627 1.20932 0.92120 1.03853 0.99244 1.21007 1.00234 1.02857 0.90300 1.18059 0.87723 1.03262 0.86074 1.84891 1.75490 1.33076 1.36045 1.21434 0.90742 1.05257 0.88385 1.98357 1.76917 1.96450 1.29432 0.91412 0.86314 0.88585 0.88841 0.84394 0.84326 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.64 11.46 55.56 0.64 -18.00 16 2 C 0.07 1.80 5.50 -17.32 -0.10 1.71 16 3 Si 0.90 18.94 29.56 -169.99 -5.03 13.91 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.41 -11.03 8.78 -37.91 -0.33 -11.36 16 8 H 0.08 2.13 6.85 -52.49 -0.36 1.77 16 9 C 0.28 7.57 6.57 -84.71 -0.56 7.02 16 10 N -0.48 -13.09 7.85 -10.90 -0.09 -13.17 16 11 C 0.14 3.27 11.17 -17.48 -0.20 3.08 16 12 C -0.32 -7.10 10.10 -39.23 -0.40 -7.50 16 13 C -0.02 -0.45 9.92 -38.98 -0.39 -0.84 16 14 C -0.25 -5.89 4.08 -104.08 -0.42 -6.32 16 15 C 0.02 0.42 3.89 -104.81 -0.41 0.01 16 16 C 0.11 2.02 7.29 -38.97 -0.28 1.74 16 17 F -0.13 -2.61 16.83 2.25 0.04 -2.57 16 18 C -0.14 -2.13 10.01 -39.58 -0.40 -2.53 16 19 C -0.13 -1.73 9.98 -39.32 -0.39 -2.12 16 20 C 0.09 1.49 6.69 -39.27 -0.26 1.22 16 21 O -0.49 -6.56 12.95 -19.65 -0.25 -6.82 16 22 C -0.03 -0.58 6.36 -38.93 -0.25 -0.82 16 23 Cl -0.04 -0.78 27.58 -51.86 -1.43 -2.21 16 24 H 0.27 6.53 8.29 -40.82 -0.34 6.20 16 25 H 0.12 2.52 8.06 -52.48 -0.42 2.09 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.39 3.26 9.06 45.56 0.41 3.67 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -30.35 292.39 -7.29 -37.64 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -1.19 Total: 3.53 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -4.38 Total: -16.71 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.55 Total: -31.17 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.25 Total: -6.82 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.43 Total: -2.21 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.35 -7.29 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245831046.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.635 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds